Archive 3 checkpoints (1-3)
Browse files- paper-releases/pbisc-diffusion/updates/20260928T225702Z-paired-ft-scsemi-delta/diffusion/metadata/NOTE.md +5 -0
- paper-releases/pbisc-diffusion/updates/20260928T225702Z-paired-ft-scsemi-delta/diffusion/metadata/inference_locations.json +549 -0
- paper-releases/pbisc-diffusion/updates/20260928T225702Z-paired-ft-scsemi-delta/diffusion/metadata/request.json +0 -0
paper-releases/pbisc-diffusion/updates/20260928T225702Z-paired-ft-scsemi-delta/diffusion/metadata/NOTE.md
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# PBISC-diffusion update 20260928T225702Z-paired-ft-scsemi-delta
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Delta after the paper-20260928 baseline for the within-dataset paired fine-tuning benchmark (plans/paired_finetune_intradataset_20260927): the scSemiProfiler 5-pair baseline (adapter code, compatibility patch record, README, queues, finished draws' score tables; unfinished draws registered as planned locations; finished draws' generated outputs as completed locations), regenerated figures and FIGURES.md, updated README, newly written condition NPZs and queues, the archive-request builder. Unchanged files are skipped by sha256. The Imperial checkpoints on server_2 were already archived in the baseline (now symlinks) and are not re-sent. scSemiProfiler runs are still in progress on both hosts.
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Payload states are recorded as supplied. Inference locations are pointers, not archived generated outputs.
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paper-releases/pbisc-diffusion/updates/20260928T225702Z-paired-ft-scsemi-delta/diffusion/metadata/inference_locations.json
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| 1 |
+
{
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| 2 |
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"locations": [
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| 3 |
+
{
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| 4 |
+
"artifact_role": "inference_output",
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| 5 |
+
"cohort": "immicro",
|
| 6 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/immicro/fewshot_n5/draw0/test_raw.npz",
|
| 7 |
+
"condition_sha256": "25588c979cd104e1b950542b66e04b0b1fdc51aea688691c6402f35011b93062",
|
| 8 |
+
"experiment": "paired_finetune_fewshot_n5",
|
| 9 |
+
"host": "server_1",
|
| 10 |
+
"observed_output": {
|
| 11 |
+
"kind": "file",
|
| 12 |
+
"presence": "observed",
|
| 13 |
+
"stat": {
|
| 14 |
+
"dev": 66306,
|
| 15 |
+
"ino": 36585064,
|
| 16 |
+
"mtime_ns": 1790614957789573777,
|
| 17 |
+
"size": 121630666
|
| 18 |
+
}
|
| 19 |
+
},
|
| 20 |
+
"observed_receipt": {
|
| 21 |
+
"kind": "file",
|
| 22 |
+
"presence": "observed",
|
| 23 |
+
"stat": {
|
| 24 |
+
"dev": 66306,
|
| 25 |
+
"ino": 36585065,
|
| 26 |
+
"mtime_ns": 1790614961582786906,
|
| 27 |
+
"size": 26877
|
| 28 |
+
}
|
| 29 |
+
},
|
| 30 |
+
"output_sha256": "438e330071dbbc6ef888ecad1bd97115d2ec3291b8230190c3dab02df99bd9cf",
|
| 31 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fewshot_n5/draw0/scsemi5__raw.npz",
|
| 32 |
+
"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/immicro/fewshot_n5/draw0/scsemi5__raw.log",
|
| 33 |
+
"seed": 20260927,
|
| 34 |
+
"sha256": "438e330071dbbc6ef888ecad1bd97115d2ec3291b8230190c3dab02df99bd9cf",
|
| 35 |
+
"sha256_basis": "existing_receipt",
|
| 36 |
+
"sha_basis": "existing_receipt",
|
| 37 |
+
"state": "completed"
|
| 38 |
+
},
|
| 39 |
+
{
|
| 40 |
+
"artifact_role": "inference_output",
|
| 41 |
+
"cohort": "ye2026_sepsis",
|
| 42 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/fewshot_n5/draw0/test_raw.npz",
|
| 43 |
+
"condition_sha256": "ae163d5eb1531842e2acea7db21a0a500f7642767566cdc639be42951543bba9",
|
| 44 |
+
"experiment": "paired_finetune_fewshot_n5",
|
| 45 |
+
"host": "server_1",
|
| 46 |
+
"observed_output": {
|
| 47 |
+
"kind": "file",
|
| 48 |
+
"presence": "observed",
|
| 49 |
+
"stat": {
|
| 50 |
+
"dev": 66306,
|
| 51 |
+
"ino": 36584600,
|
| 52 |
+
"mtime_ns": 1790607317619352501,
|
| 53 |
+
"size": 77820802
|
| 54 |
+
}
|
| 55 |
+
},
|
| 56 |
+
"observed_receipt": {
|
| 57 |
+
"kind": "file",
|
| 58 |
+
"presence": "observed",
|
| 59 |
+
"stat": {
|
| 60 |
+
"dev": 66306,
|
| 61 |
+
"ino": 36584601,
|
| 62 |
+
"mtime_ns": 1790607320565665015,
|
| 63 |
+
"size": 21050
|
| 64 |
+
}
|
| 65 |
+
},
|
| 66 |
+
"output_sha256": "80d99f5363d0fd7b967070fe1e8e716a05c86869edd31757c4e7cac5bf7ef29f",
|
| 67 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fewshot_n5/draw0/scsemi5__raw.npz",
|
| 68 |
+
"receipt": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/ye2026_sepsis/fewshot_n5/draw0/scsemi5__raw.log",
|
| 69 |
+
"seed": 20260927,
|
| 70 |
+
"sha256": "80d99f5363d0fd7b967070fe1e8e716a05c86869edd31757c4e7cac5bf7ef29f",
|
| 71 |
+
"sha256_basis": "existing_receipt",
|
| 72 |
+
"sha_basis": "existing_receipt",
|
| 73 |
+
"state": "completed"
|
| 74 |
+
},
|
| 75 |
+
{
|
| 76 |
+
"artifact_role": "inference_output",
|
| 77 |
+
"cohort": "giroux2022",
|
| 78 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/giroux2022/fewshot_n5/draw0/test_raw.npz",
|
| 79 |
+
"condition_sha256": "f04c5725cf7d20ca4ca26d2ac43352d8c233b9d6c4d7ddc2116e3be4694623a9",
|
| 80 |
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"experiment": "paired_finetune_fewshot_n5",
|
| 81 |
+
"host": "server_1",
|
| 82 |
+
"observed_output": {
|
| 83 |
+
"kind": "file",
|
| 84 |
+
"presence": "observed",
|
| 85 |
+
"stat": {
|
| 86 |
+
"dev": 66306,
|
| 87 |
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"ino": 36585210,
|
| 88 |
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"mtime_ns": 1790624831948243982,
|
| 89 |
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"size": 14389697
|
| 90 |
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}
|
| 91 |
+
},
|
| 92 |
+
"observed_receipt": {
|
| 93 |
+
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paper-releases/pbisc-diffusion/updates/20260928T225702Z-paired-ft-scsemi-delta/diffusion/metadata/request.json
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