Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2/SPLIT.json +125 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2/state_types.tsv +28 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2_full/SPLIT.json +126 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2_full/state_types.tsv +28 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2/SPLIT.json
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{
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"dataset": "ye2026_sepsis",
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"kind": "fewshot",
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"idx": 2,
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"reference": [
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"PIC01",
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"Res-S136",
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"Res-S177",
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"Res-S77",
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"Skin-S74"
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],
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"mixture": [
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"Abd-PS04",
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"Abd-PS05",
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"Abd-PS07",
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"Abd-PS19",
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"Abd-PS20",
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"Abd-PS23",
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"Abd-PS27",
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"Abd-S102",
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"Abd-S103",
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"Abd-S120",
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"Abd-S123",
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| 24 |
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"Abd-S156",
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| 25 |
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"Abd-S39",
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"Abd-S42",
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"Abd-S47",
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"Abd-S51",
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"Abd-S54",
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"Abd-S57",
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"Abd-S66",
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"Abd-S79",
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"Abd-S83",
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"Abd-S98",
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"HC01",
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"HC05",
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"HC07",
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"HC09",
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"HC12",
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"HC13",
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"HC16",
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"IC10",
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"IC15",
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"IC16",
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"IC19",
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"IC22",
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| 47 |
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"IC23",
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"PHC01",
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"PHC02",
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"PHC03",
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| 51 |
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"PHC05",
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| 52 |
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"PIC02",
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| 53 |
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"PIC04",
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| 54 |
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"PIC05",
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"Res-PS02",
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| 56 |
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"Res-PS03",
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| 57 |
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"Res-PS12",
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| 58 |
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"Res-PS16",
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"Res-PS21",
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| 60 |
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"Res-PS22",
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"Res-PS25",
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| 62 |
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"Res-PS26",
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| 63 |
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"Res-S10",
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| 64 |
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"Res-S125",
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| 65 |
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"Res-S127",
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| 66 |
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"Res-S139",
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| 67 |
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"Res-S146",
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| 68 |
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"Res-S149",
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| 69 |
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"Res-S150",
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| 70 |
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"Res-S164",
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| 71 |
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"Res-S166",
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| 72 |
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"Res-S174",
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| 73 |
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"Res-S184",
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"Res-S19",
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| 75 |
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"Res-S26",
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| 76 |
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"Res-S40",
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| 77 |
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"Res-S87",
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| 78 |
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"Skin-S140",
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| 79 |
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"Skin-S142",
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| 80 |
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"Skin-S152",
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| 81 |
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"Skin-S38",
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| 82 |
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"Skin-S43",
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| 83 |
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"Skin-S46",
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| 84 |
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"Skin-S52",
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| 85 |
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"Uri-S134",
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| 86 |
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"Uri-S147",
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| 87 |
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"Uri-S157",
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| 88 |
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"Uri-S20",
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| 89 |
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"Uri-S93"
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| 90 |
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],
|
| 91 |
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"train_donors": [
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| 92 |
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"PIC01",
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| 93 |
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"Res-S136",
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| 94 |
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"Res-S177",
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| 95 |
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"Res-S77",
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| 96 |
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"Skin-S74"
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| 97 |
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],
|
| 98 |
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"run_json_check": true,
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| 99 |
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"n_reference_samples": 5,
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| 100 |
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"n_mixture_samples": 77,
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| 101 |
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"reference_cells": 28727,
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| 102 |
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"states": 27,
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| 103 |
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"states_merged_minor": 3,
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| 104 |
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"types": [
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| 105 |
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"B cell",
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| 106 |
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"DC",
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| 107 |
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"Monocyte",
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"NK cell",
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| 109 |
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"Other",
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| 110 |
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"T cell"
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| 111 |
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],
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| 112 |
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"missing_types": [],
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| 113 |
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"bp_axis_genes": 5959,
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| 114 |
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"genes_kept": 5650,
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| 115 |
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"genes_dropped_not_bulk_valid": 0,
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| 116 |
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"genes_dropped_zero_reference": 309,
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| 117 |
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"aggregates_sha256": "d38afdb00f5616ada109babfb6fc0f16bc37b33a434807d263d0163895e1f9de",
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| 118 |
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"files": {
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| 119 |
+
"reference.tsv.gz": "baf8b532e3d499ccb6fa5ec13208e19ed34a0e885ac90462911441713d9f48f6",
|
| 120 |
+
"state_types.tsv": "8f600bf8d2bf9b2ac8ead098e45b0bcb5118c23c7a274d9f38690ea37bf71476",
|
| 121 |
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"mixture.tsv.gz": "fdf2c9954168b14c9d9236dbc0e54a9ada348a3fc904469a255736797f315069"
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| 122 |
+
},
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| 123 |
+
"tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
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| 124 |
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"common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
|
| 125 |
+
}
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2/state_types.tsv
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| 1 |
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state type n_cells
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| 2 |
+
B cell|Effector B cell B cell 243
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| 3 |
+
B cell|Memory B cell B cell 696
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| 4 |
+
B cell|Naive B cell B cell 2082
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| 5 |
+
B cell|Plasma cell B cell 71
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| 6 |
+
B cell|Transitional B cell B cell 1283
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| 7 |
+
DC|cDC2 DC 62
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| 8 |
+
Monocyte|CD14 monocyte Monocyte 2418
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| 9 |
+
Monocyte|CD16 monocyte Monocyte 474
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| 10 |
+
Monocyte|Intermediate monocyte Monocyte 409
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| 11 |
+
NK cell|CD56bright NK cell NK cell 238
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| 12 |
+
NK cell|CD56dim NK cell NK cell 1002
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| 13 |
+
NK cell|Proliferating NK cell NK cell 723
|
| 14 |
+
Other|Erythrocyte Other 36
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| 15 |
+
Other|ILC Other 78
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| 16 |
+
Other|Platelet Other 732
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| 17 |
+
Other|Progenitor cell Other 42
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| 18 |
+
T cell|CD8aa T cell 874
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| 19 |
+
T cell|DN T cell T cell 724
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| 20 |
+
T cell|MAIT T cell 263
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| 21 |
+
T cell|Memory CD4 T cell T cell 4377
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| 22 |
+
T cell|Memory CD8 T cell T cell 2042
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| 23 |
+
T cell|Naive CD4 T cell T cell 4399
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| 24 |
+
T cell|Naive CD8 T cell T cell 3229
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| 25 |
+
T cell|Proliferating T cell T cell 784
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| 26 |
+
T cell|Treg T cell 716
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| 27 |
+
T cell|gdT T cell 713
|
| 28 |
+
DC|minor DC 17
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2_full/SPLIT.json
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| 1 |
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{
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| 2 |
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"dataset": "ye2026_sepsis",
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| 3 |
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"kind": "fewshot",
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| 4 |
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"idx": 2,
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| 5 |
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"reference": [
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| 6 |
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"PIC01",
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| 7 |
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"Res-S136",
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| 8 |
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"Res-S177",
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| 9 |
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"Res-S77",
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| 10 |
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"Skin-S74"
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| 11 |
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],
|
| 12 |
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"mixture": [
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| 13 |
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"Abd-PS04",
|
| 14 |
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"Abd-PS05",
|
| 15 |
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"Abd-PS07",
|
| 16 |
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"Abd-PS19",
|
| 17 |
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"Abd-PS20",
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| 18 |
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"Abd-PS23",
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| 19 |
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"Abd-PS27",
|
| 20 |
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"Abd-S102",
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| 21 |
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"Abd-S103",
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| 22 |
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"Abd-S120",
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| 23 |
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"Abd-S123",
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| 24 |
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"Abd-S156",
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| 25 |
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"Abd-S39",
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| 26 |
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"Abd-S42",
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| 27 |
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"Abd-S47",
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| 28 |
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"Abd-S51",
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| 29 |
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"Abd-S54",
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| 30 |
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"Abd-S57",
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| 31 |
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"Abd-S66",
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| 32 |
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"Abd-S79",
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| 33 |
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"Abd-S83",
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| 34 |
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"Abd-S98",
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| 35 |
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"HC01",
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| 36 |
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"HC05",
|
| 37 |
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"HC07",
|
| 38 |
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"HC09",
|
| 39 |
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"HC12",
|
| 40 |
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"HC13",
|
| 41 |
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"HC16",
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| 42 |
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"IC10",
|
| 43 |
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"IC15",
|
| 44 |
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"IC16",
|
| 45 |
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"IC19",
|
| 46 |
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"IC22",
|
| 47 |
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"IC23",
|
| 48 |
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"PHC01",
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| 49 |
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"PHC02",
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| 50 |
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"PHC03",
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| 51 |
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"PHC05",
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| 52 |
+
"PIC02",
|
| 53 |
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"PIC04",
|
| 54 |
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"PIC05",
|
| 55 |
+
"Res-PS02",
|
| 56 |
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"Res-PS03",
|
| 57 |
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"Res-PS12",
|
| 58 |
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"Res-PS16",
|
| 59 |
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"Res-PS21",
|
| 60 |
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"Res-PS22",
|
| 61 |
+
"Res-PS25",
|
| 62 |
+
"Res-PS26",
|
| 63 |
+
"Res-S10",
|
| 64 |
+
"Res-S125",
|
| 65 |
+
"Res-S127",
|
| 66 |
+
"Res-S139",
|
| 67 |
+
"Res-S146",
|
| 68 |
+
"Res-S149",
|
| 69 |
+
"Res-S150",
|
| 70 |
+
"Res-S164",
|
| 71 |
+
"Res-S166",
|
| 72 |
+
"Res-S174",
|
| 73 |
+
"Res-S184",
|
| 74 |
+
"Res-S19",
|
| 75 |
+
"Res-S26",
|
| 76 |
+
"Res-S40",
|
| 77 |
+
"Res-S87",
|
| 78 |
+
"Skin-S140",
|
| 79 |
+
"Skin-S142",
|
| 80 |
+
"Skin-S152",
|
| 81 |
+
"Skin-S38",
|
| 82 |
+
"Skin-S43",
|
| 83 |
+
"Skin-S46",
|
| 84 |
+
"Skin-S52",
|
| 85 |
+
"Uri-S134",
|
| 86 |
+
"Uri-S147",
|
| 87 |
+
"Uri-S157",
|
| 88 |
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"Uri-S20",
|
| 89 |
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"Uri-S93"
|
| 90 |
+
],
|
| 91 |
+
"train_donors": [
|
| 92 |
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"PIC01",
|
| 93 |
+
"Res-S136",
|
| 94 |
+
"Res-S177",
|
| 95 |
+
"Res-S77",
|
| 96 |
+
"Skin-S74"
|
| 97 |
+
],
|
| 98 |
+
"run_json_check": true,
|
| 99 |
+
"n_reference_samples": 5,
|
| 100 |
+
"n_mixture_samples": 77,
|
| 101 |
+
"reference_cells": 28727,
|
| 102 |
+
"states": 27,
|
| 103 |
+
"states_merged_minor": 3,
|
| 104 |
+
"types": [
|
| 105 |
+
"B cell",
|
| 106 |
+
"DC",
|
| 107 |
+
"Monocyte",
|
| 108 |
+
"NK cell",
|
| 109 |
+
"Other",
|
| 110 |
+
"T cell"
|
| 111 |
+
],
|
| 112 |
+
"missing_types": [],
|
| 113 |
+
"bp_axis_genes": 18787,
|
| 114 |
+
"genes_kept": 15737,
|
| 115 |
+
"genes_dropped_not_bulk_valid": 0,
|
| 116 |
+
"genes_dropped_zero_reference": 3050,
|
| 117 |
+
"gene_mode": "full",
|
| 118 |
+
"aggregates_sha256": "1c866cbb8990359c870f46804e55cbae4a38cb82b5e0bf5f47bd9a552ada966a",
|
| 119 |
+
"files": {
|
| 120 |
+
"reference.tsv.gz": "653b3e76d415122dd4835bdab7e843ecb35ca80f34133d450100d16e2a51aeeb",
|
| 121 |
+
"state_types.tsv": "8f600bf8d2bf9b2ac8ead098e45b0bcb5118c23c7a274d9f38690ea37bf71476",
|
| 122 |
+
"mixture.tsv.gz": "3199d519c9a088af4ce8260fe430168a825a7417f96fadf36e375bdd7ef968e9"
|
| 123 |
+
},
|
| 124 |
+
"tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
|
| 125 |
+
"common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
|
| 126 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2_full/state_types.tsv
ADDED
|
@@ -0,0 +1,28 @@
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|
| 1 |
+
state type n_cells
|
| 2 |
+
B cell|Effector B cell B cell 243
|
| 3 |
+
B cell|Memory B cell B cell 696
|
| 4 |
+
B cell|Naive B cell B cell 2082
|
| 5 |
+
B cell|Plasma cell B cell 71
|
| 6 |
+
B cell|Transitional B cell B cell 1283
|
| 7 |
+
DC|cDC2 DC 62
|
| 8 |
+
Monocyte|CD14 monocyte Monocyte 2418
|
| 9 |
+
Monocyte|CD16 monocyte Monocyte 474
|
| 10 |
+
Monocyte|Intermediate monocyte Monocyte 409
|
| 11 |
+
NK cell|CD56bright NK cell NK cell 238
|
| 12 |
+
NK cell|CD56dim NK cell NK cell 1002
|
| 13 |
+
NK cell|Proliferating NK cell NK cell 723
|
| 14 |
+
Other|Erythrocyte Other 36
|
| 15 |
+
Other|ILC Other 78
|
| 16 |
+
Other|Platelet Other 732
|
| 17 |
+
Other|Progenitor cell Other 42
|
| 18 |
+
T cell|CD8aa T cell 874
|
| 19 |
+
T cell|DN T cell T cell 724
|
| 20 |
+
T cell|MAIT T cell 263
|
| 21 |
+
T cell|Memory CD4 T cell T cell 4377
|
| 22 |
+
T cell|Memory CD8 T cell T cell 2042
|
| 23 |
+
T cell|Naive CD4 T cell T cell 4399
|
| 24 |
+
T cell|Naive CD8 T cell T cell 3229
|
| 25 |
+
T cell|Proliferating T cell T cell 784
|
| 26 |
+
T cell|Treg T cell 716
|
| 27 |
+
T cell|gdT T cell 713
|
| 28 |
+
DC|minor DC 17
|