junidude14 commited on
Commit
cb30023
·
verified ·
1 Parent(s): b94aa5d

Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2/SPLIT.json ADDED
@@ -0,0 +1,125 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "ye2026_sepsis",
3
+ "kind": "fewshot",
4
+ "idx": 2,
5
+ "reference": [
6
+ "PIC01",
7
+ "Res-S136",
8
+ "Res-S177",
9
+ "Res-S77",
10
+ "Skin-S74"
11
+ ],
12
+ "mixture": [
13
+ "Abd-PS04",
14
+ "Abd-PS05",
15
+ "Abd-PS07",
16
+ "Abd-PS19",
17
+ "Abd-PS20",
18
+ "Abd-PS23",
19
+ "Abd-PS27",
20
+ "Abd-S102",
21
+ "Abd-S103",
22
+ "Abd-S120",
23
+ "Abd-S123",
24
+ "Abd-S156",
25
+ "Abd-S39",
26
+ "Abd-S42",
27
+ "Abd-S47",
28
+ "Abd-S51",
29
+ "Abd-S54",
30
+ "Abd-S57",
31
+ "Abd-S66",
32
+ "Abd-S79",
33
+ "Abd-S83",
34
+ "Abd-S98",
35
+ "HC01",
36
+ "HC05",
37
+ "HC07",
38
+ "HC09",
39
+ "HC12",
40
+ "HC13",
41
+ "HC16",
42
+ "IC10",
43
+ "IC15",
44
+ "IC16",
45
+ "IC19",
46
+ "IC22",
47
+ "IC23",
48
+ "PHC01",
49
+ "PHC02",
50
+ "PHC03",
51
+ "PHC05",
52
+ "PIC02",
53
+ "PIC04",
54
+ "PIC05",
55
+ "Res-PS02",
56
+ "Res-PS03",
57
+ "Res-PS12",
58
+ "Res-PS16",
59
+ "Res-PS21",
60
+ "Res-PS22",
61
+ "Res-PS25",
62
+ "Res-PS26",
63
+ "Res-S10",
64
+ "Res-S125",
65
+ "Res-S127",
66
+ "Res-S139",
67
+ "Res-S146",
68
+ "Res-S149",
69
+ "Res-S150",
70
+ "Res-S164",
71
+ "Res-S166",
72
+ "Res-S174",
73
+ "Res-S184",
74
+ "Res-S19",
75
+ "Res-S26",
76
+ "Res-S40",
77
+ "Res-S87",
78
+ "Skin-S140",
79
+ "Skin-S142",
80
+ "Skin-S152",
81
+ "Skin-S38",
82
+ "Skin-S43",
83
+ "Skin-S46",
84
+ "Skin-S52",
85
+ "Uri-S134",
86
+ "Uri-S147",
87
+ "Uri-S157",
88
+ "Uri-S20",
89
+ "Uri-S93"
90
+ ],
91
+ "train_donors": [
92
+ "PIC01",
93
+ "Res-S136",
94
+ "Res-S177",
95
+ "Res-S77",
96
+ "Skin-S74"
97
+ ],
98
+ "run_json_check": true,
99
+ "n_reference_samples": 5,
100
+ "n_mixture_samples": 77,
101
+ "reference_cells": 28727,
102
+ "states": 27,
103
+ "states_merged_minor": 3,
104
+ "types": [
105
+ "B cell",
106
+ "DC",
107
+ "Monocyte",
108
+ "NK cell",
109
+ "Other",
110
+ "T cell"
111
+ ],
112
+ "missing_types": [],
113
+ "bp_axis_genes": 5959,
114
+ "genes_kept": 5650,
115
+ "genes_dropped_not_bulk_valid": 0,
116
+ "genes_dropped_zero_reference": 309,
117
+ "aggregates_sha256": "d38afdb00f5616ada109babfb6fc0f16bc37b33a434807d263d0163895e1f9de",
118
+ "files": {
119
+ "reference.tsv.gz": "baf8b532e3d499ccb6fa5ec13208e19ed34a0e885ac90462911441713d9f48f6",
120
+ "state_types.tsv": "8f600bf8d2bf9b2ac8ead098e45b0bcb5118c23c7a274d9f38690ea37bf71476",
121
+ "mixture.tsv.gz": "fdf2c9954168b14c9d9236dbc0e54a9ada348a3fc904469a255736797f315069"
122
+ },
123
+ "tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
124
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
125
+ }
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2/state_types.tsv ADDED
@@ -0,0 +1,28 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 243
3
+ B cell|Memory B cell B cell 696
4
+ B cell|Naive B cell B cell 2082
5
+ B cell|Plasma cell B cell 71
6
+ B cell|Transitional B cell B cell 1283
7
+ DC|cDC2 DC 62
8
+ Monocyte|CD14 monocyte Monocyte 2418
9
+ Monocyte|CD16 monocyte Monocyte 474
10
+ Monocyte|Intermediate monocyte Monocyte 409
11
+ NK cell|CD56bright NK cell NK cell 238
12
+ NK cell|CD56dim NK cell NK cell 1002
13
+ NK cell|Proliferating NK cell NK cell 723
14
+ Other|Erythrocyte Other 36
15
+ Other|ILC Other 78
16
+ Other|Platelet Other 732
17
+ Other|Progenitor cell Other 42
18
+ T cell|CD8aa T cell 874
19
+ T cell|DN T cell T cell 724
20
+ T cell|MAIT T cell 263
21
+ T cell|Memory CD4 T cell T cell 4377
22
+ T cell|Memory CD8 T cell T cell 2042
23
+ T cell|Naive CD4 T cell T cell 4399
24
+ T cell|Naive CD8 T cell T cell 3229
25
+ T cell|Proliferating T cell T cell 784
26
+ T cell|Treg T cell 716
27
+ T cell|gdT T cell 713
28
+ DC|minor DC 17
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2_full/SPLIT.json ADDED
@@ -0,0 +1,126 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "ye2026_sepsis",
3
+ "kind": "fewshot",
4
+ "idx": 2,
5
+ "reference": [
6
+ "PIC01",
7
+ "Res-S136",
8
+ "Res-S177",
9
+ "Res-S77",
10
+ "Skin-S74"
11
+ ],
12
+ "mixture": [
13
+ "Abd-PS04",
14
+ "Abd-PS05",
15
+ "Abd-PS07",
16
+ "Abd-PS19",
17
+ "Abd-PS20",
18
+ "Abd-PS23",
19
+ "Abd-PS27",
20
+ "Abd-S102",
21
+ "Abd-S103",
22
+ "Abd-S120",
23
+ "Abd-S123",
24
+ "Abd-S156",
25
+ "Abd-S39",
26
+ "Abd-S42",
27
+ "Abd-S47",
28
+ "Abd-S51",
29
+ "Abd-S54",
30
+ "Abd-S57",
31
+ "Abd-S66",
32
+ "Abd-S79",
33
+ "Abd-S83",
34
+ "Abd-S98",
35
+ "HC01",
36
+ "HC05",
37
+ "HC07",
38
+ "HC09",
39
+ "HC12",
40
+ "HC13",
41
+ "HC16",
42
+ "IC10",
43
+ "IC15",
44
+ "IC16",
45
+ "IC19",
46
+ "IC22",
47
+ "IC23",
48
+ "PHC01",
49
+ "PHC02",
50
+ "PHC03",
51
+ "PHC05",
52
+ "PIC02",
53
+ "PIC04",
54
+ "PIC05",
55
+ "Res-PS02",
56
+ "Res-PS03",
57
+ "Res-PS12",
58
+ "Res-PS16",
59
+ "Res-PS21",
60
+ "Res-PS22",
61
+ "Res-PS25",
62
+ "Res-PS26",
63
+ "Res-S10",
64
+ "Res-S125",
65
+ "Res-S127",
66
+ "Res-S139",
67
+ "Res-S146",
68
+ "Res-S149",
69
+ "Res-S150",
70
+ "Res-S164",
71
+ "Res-S166",
72
+ "Res-S174",
73
+ "Res-S184",
74
+ "Res-S19",
75
+ "Res-S26",
76
+ "Res-S40",
77
+ "Res-S87",
78
+ "Skin-S140",
79
+ "Skin-S142",
80
+ "Skin-S152",
81
+ "Skin-S38",
82
+ "Skin-S43",
83
+ "Skin-S46",
84
+ "Skin-S52",
85
+ "Uri-S134",
86
+ "Uri-S147",
87
+ "Uri-S157",
88
+ "Uri-S20",
89
+ "Uri-S93"
90
+ ],
91
+ "train_donors": [
92
+ "PIC01",
93
+ "Res-S136",
94
+ "Res-S177",
95
+ "Res-S77",
96
+ "Skin-S74"
97
+ ],
98
+ "run_json_check": true,
99
+ "n_reference_samples": 5,
100
+ "n_mixture_samples": 77,
101
+ "reference_cells": 28727,
102
+ "states": 27,
103
+ "states_merged_minor": 3,
104
+ "types": [
105
+ "B cell",
106
+ "DC",
107
+ "Monocyte",
108
+ "NK cell",
109
+ "Other",
110
+ "T cell"
111
+ ],
112
+ "missing_types": [],
113
+ "bp_axis_genes": 18787,
114
+ "genes_kept": 15737,
115
+ "genes_dropped_not_bulk_valid": 0,
116
+ "genes_dropped_zero_reference": 3050,
117
+ "gene_mode": "full",
118
+ "aggregates_sha256": "1c866cbb8990359c870f46804e55cbae4a38cb82b5e0bf5f47bd9a552ada966a",
119
+ "files": {
120
+ "reference.tsv.gz": "653b3e76d415122dd4835bdab7e843ecb35ca80f34133d450100d16e2a51aeeb",
121
+ "state_types.tsv": "8f600bf8d2bf9b2ac8ead098e45b0bcb5118c23c7a274d9f38690ea37bf71476",
122
+ "mixture.tsv.gz": "3199d519c9a088af4ce8260fe430168a825a7417f96fadf36e375bdd7ef968e9"
123
+ },
124
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
125
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
126
+ }
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot2_full/state_types.tsv ADDED
@@ -0,0 +1,28 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 243
3
+ B cell|Memory B cell B cell 696
4
+ B cell|Naive B cell B cell 2082
5
+ B cell|Plasma cell B cell 71
6
+ B cell|Transitional B cell B cell 1283
7
+ DC|cDC2 DC 62
8
+ Monocyte|CD14 monocyte Monocyte 2418
9
+ Monocyte|CD16 monocyte Monocyte 474
10
+ Monocyte|Intermediate monocyte Monocyte 409
11
+ NK cell|CD56bright NK cell NK cell 238
12
+ NK cell|CD56dim NK cell NK cell 1002
13
+ NK cell|Proliferating NK cell NK cell 723
14
+ Other|Erythrocyte Other 36
15
+ Other|ILC Other 78
16
+ Other|Platelet Other 732
17
+ Other|Progenitor cell Other 42
18
+ T cell|CD8aa T cell 874
19
+ T cell|DN T cell T cell 724
20
+ T cell|MAIT T cell 263
21
+ T cell|Memory CD4 T cell T cell 4377
22
+ T cell|Memory CD8 T cell T cell 2042
23
+ T cell|Naive CD4 T cell T cell 4399
24
+ T cell|Naive CD8 T cell T cell 3229
25
+ T cell|Proliferating T cell T cell 784
26
+ T cell|Treg T cell 716
27
+ T cell|gdT T cell 713
28
+ DC|minor DC 17