Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/0c6f547d856b8a9d/score.json +61 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3fe6b37475ea294c/FULL_RECEIPT.json +306 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/a2b4f54f146aedc7/imperial_eskd-disease-draw0-score.json +143 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/d27b3657e1b601c9/manifest.json +153 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/0c6f547d856b8a9d/score.json
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3fe6b37475ea294c/FULL_RECEIPT.json
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],
|
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"note": "Per-arm complete metrics; paired inter-method bootstrap is in aggregate output, when both arms are ready.",
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"gpu_operations": 0
|
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}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/a2b4f54f146aedc7/imperial_eskd-disease-draw0-score.json
ADDED
|
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|
| 1 |
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{
|
| 2 |
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|
| 3 |
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"signature": "39583e1a1148b9724c3a4b01bbb8a9d0ce259a625a7b49621729bc12dc5fd5d4",
|
| 4 |
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"outputs": [
|
| 5 |
+
{
|
| 6 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/score/summary.json",
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| 11 |
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{
|
| 12 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/statistics/status.json",
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| 16 |
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{
|
| 18 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/statistics/donor_bootstrap_2000.csv",
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{
|
| 24 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/extras/imperial_eskd/strict/manifest.json",
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|
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|
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| 28 |
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},
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| 29 |
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{
|
| 30 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0/contrast/imperial_eskd/strict/manifest.json",
|
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|
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|
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| 34 |
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}
|
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],
|
| 36 |
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"seconds": 3116.4731240300025,
|
| 37 |
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"at": "2026-10-13T00:29:29.148683+00:00",
|
| 38 |
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"execution": {
|
| 39 |
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"host": "spark-fa6b",
|
| 40 |
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"map_host": null,
|
| 41 |
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"map_path": null,
|
| 42 |
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"map_sha256": null,
|
| 43 |
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"argv": [
|
| 44 |
+
"/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
|
| 45 |
+
"-u",
|
| 46 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 47 |
+
"--support-manifest",
|
| 48 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/imperial_eskd/disease/draw0/support.json",
|
| 49 |
+
"--out",
|
| 50 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0",
|
| 51 |
+
"--action",
|
| 52 |
+
"all",
|
| 53 |
+
"--threads",
|
| 54 |
+
"4",
|
| 55 |
+
"--arm",
|
| 56 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/lora.npz",
|
| 57 |
+
"--arm",
|
| 58 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/pairedcal.npz",
|
| 59 |
+
"--arm",
|
| 60 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/scsemi.npz",
|
| 61 |
+
"--arm",
|
| 62 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/raw.npz",
|
| 63 |
+
"--arm",
|
| 64 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/refcal.npz"
|
| 65 |
+
],
|
| 66 |
+
"command": [
|
| 67 |
+
"systemd-run",
|
| 68 |
+
"--user",
|
| 69 |
+
"--wait",
|
| 70 |
+
"--collect",
|
| 71 |
+
"--pipe",
|
| 72 |
+
"--quiet",
|
| 73 |
+
"--unit=pbisc-strict-imperial_eskd-disease-draw0-score-44882-1791848252674937590",
|
| 74 |
+
"--slice=app.slice",
|
| 75 |
+
"--working-directory=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012",
|
| 76 |
+
"--expand-environment=no",
|
| 77 |
+
"-p",
|
| 78 |
+
"MemoryMax=32G",
|
| 79 |
+
"-p",
|
| 80 |
+
"MemorySwapMax=0",
|
| 81 |
+
"-p",
|
| 82 |
+
"OOMPolicy=kill",
|
| 83 |
+
"-p",
|
| 84 |
+
"OOMScoreAdjust=500",
|
| 85 |
+
"-p",
|
| 86 |
+
"CPUQuota=400%",
|
| 87 |
+
"/usr/bin/env",
|
| 88 |
+
"CUDA_VISIBLE_DEVICES=",
|
| 89 |
+
"PATH=/home/sj_server_1/.local/bin:/home/sj_server_1/miniforge3/bin:/usr/local/bin:/usr/bin:/bin",
|
| 90 |
+
"PYTHONDONTWRITEBYTECODE=1",
|
| 91 |
+
"PYTHONUNBUFFERED=1",
|
| 92 |
+
"OMP_NUM_THREADS=4",
|
| 93 |
+
"OPENBLAS_NUM_THREADS=4",
|
| 94 |
+
"MKL_NUM_THREADS=4",
|
| 95 |
+
"NUMBA_NUM_THREADS=4",
|
| 96 |
+
"/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
|
| 97 |
+
"-u",
|
| 98 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 99 |
+
"--support-manifest",
|
| 100 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/imperial_eskd/disease/draw0/support.json",
|
| 101 |
+
"--out",
|
| 102 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0",
|
| 103 |
+
"--action",
|
| 104 |
+
"all",
|
| 105 |
+
"--threads",
|
| 106 |
+
"4",
|
| 107 |
+
"--arm",
|
| 108 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/lora.npz",
|
| 109 |
+
"--arm",
|
| 110 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/pairedcal.npz",
|
| 111 |
+
"--arm",
|
| 112 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/scsemi.npz",
|
| 113 |
+
"--arm",
|
| 114 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/raw.npz",
|
| 115 |
+
"--arm",
|
| 116 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/refcal.npz"
|
| 117 |
+
]
|
| 118 |
+
},
|
| 119 |
+
"argv": [
|
| 120 |
+
"/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
|
| 121 |
+
"-u",
|
| 122 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 123 |
+
"--support-manifest",
|
| 124 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/imperial_eskd/disease/draw0/support.json",
|
| 125 |
+
"--out",
|
| 126 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw0",
|
| 127 |
+
"--action",
|
| 128 |
+
"all",
|
| 129 |
+
"--threads",
|
| 130 |
+
"4",
|
| 131 |
+
"--arm",
|
| 132 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/lora.npz",
|
| 133 |
+
"--arm",
|
| 134 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/pairedcal.npz",
|
| 135 |
+
"--arm",
|
| 136 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw0/scsemi.npz",
|
| 137 |
+
"--arm",
|
| 138 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/raw.npz",
|
| 139 |
+
"--arm",
|
| 140 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/refcal.npz"
|
| 141 |
+
],
|
| 142 |
+
"previous_outputs": null
|
| 143 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/d27b3657e1b601c9/manifest.json
ADDED
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@@ -0,0 +1,153 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "paired_ft_extra_metrics.v1",
|
| 3 |
+
"dataset": "ye2026_sepsis",
|
| 4 |
+
"design": "scored",
|
| 5 |
+
"unit": "strict",
|
| 6 |
+
"written_utc": "2026-10-12T16:42:15.656251+00:00",
|
| 7 |
+
"command": [
|
| 8 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
+
"--support-manifest",
|
| 10 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw2/support.json",
|
| 11 |
+
"--out",
|
| 12 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2",
|
| 13 |
+
"--action",
|
| 14 |
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"all",
|
| 15 |
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"--threads",
|
| 16 |
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"4",
|
| 17 |
+
"--arm",
|
| 18 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ye2026_sepsis/disease/draw2/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/ye2026_sepsis/refcal.npz"
|
| 27 |
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],
|
| 28 |
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"threads": 4,
|
| 29 |
+
"donors": [
|
| 30 |
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"Abd-PS04",
|
| 31 |
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"Abd-PS05",
|
| 32 |
+
"Abd-PS07",
|
| 33 |
+
"Abd-PS19",
|
| 34 |
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"Abd-PS20",
|
| 35 |
+
"Abd-PS23",
|
| 36 |
+
"Abd-PS27",
|
| 37 |
+
"Abd-S102",
|
| 38 |
+
"Abd-S103",
|
| 39 |
+
"Abd-S120",
|
| 40 |
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"Abd-S123",
|
| 41 |
+
"Abd-S156",
|
| 42 |
+
"Abd-S39",
|
| 43 |
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"Abd-S42",
|
| 44 |
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"Abd-S47",
|
| 45 |
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"Abd-S51",
|
| 46 |
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"Abd-S54",
|
| 47 |
+
"Abd-S57",
|
| 48 |
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"Abd-S66",
|
| 49 |
+
"Abd-S79",
|
| 50 |
+
"Abd-S83",
|
| 51 |
+
"Abd-S98",
|
| 52 |
+
"HC01",
|
| 53 |
+
"HC05",
|
| 54 |
+
"HC07",
|
| 55 |
+
"HC09",
|
| 56 |
+
"HC12",
|
| 57 |
+
"HC13",
|
| 58 |
+
"HC16",
|
| 59 |
+
"IC10",
|
| 60 |
+
"IC15",
|
| 61 |
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"IC16",
|
| 62 |
+
"IC19",
|
| 63 |
+
"IC22",
|
| 64 |
+
"IC23",
|
| 65 |
+
"PHC01",
|
| 66 |
+
"PHC02",
|
| 67 |
+
"PHC03",
|
| 68 |
+
"PHC05",
|
| 69 |
+
"PIC02",
|
| 70 |
+
"PIC04",
|
| 71 |
+
"PIC05",
|
| 72 |
+
"Res-PS02",
|
| 73 |
+
"Res-PS03",
|
| 74 |
+
"Res-PS12",
|
| 75 |
+
"Res-PS16",
|
| 76 |
+
"Res-PS21",
|
| 77 |
+
"Res-PS22",
|
| 78 |
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"Res-PS25",
|
| 79 |
+
"Res-PS26",
|
| 80 |
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"Res-S10",
|
| 81 |
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"Res-S125",
|
| 82 |
+
"Res-S127",
|
| 83 |
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"Res-S139",
|
| 84 |
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"Res-S146",
|
| 85 |
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"Res-S149",
|
| 86 |
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"Res-S150",
|
| 87 |
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"Res-S164",
|
| 88 |
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"Res-S166",
|
| 89 |
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"Res-S174",
|
| 90 |
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"Res-S184",
|
| 91 |
+
"Res-S19",
|
| 92 |
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"Res-S26",
|
| 93 |
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"Res-S40",
|
| 94 |
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"Res-S87",
|
| 95 |
+
"Skin-S140",
|
| 96 |
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"Skin-S142",
|
| 97 |
+
"Skin-S152",
|
| 98 |
+
"Skin-S38",
|
| 99 |
+
"Skin-S43",
|
| 100 |
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"Skin-S46",
|
| 101 |
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"Skin-S52",
|
| 102 |
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"Uri-S134",
|
| 103 |
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"Uri-S147",
|
| 104 |
+
"Uri-S157",
|
| 105 |
+
"Uri-S20",
|
| 106 |
+
"Uri-S93"
|
| 107 |
+
],
|
| 108 |
+
"n_samples": 77,
|
| 109 |
+
"calls": {
|
| 110 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/score": {
|
| 111 |
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"arms": [
|
| 112 |
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"lora",
|
| 113 |
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"pairedcal",
|
| 114 |
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"scsemi",
|
| 115 |
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"raw",
|
| 116 |
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"refcal"
|
| 117 |
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],
|
| 118 |
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"summary_sha256": "b5d9d1d3a0f5af919c9da94588e0d238c217fb6b6aff3250c21af8c9e25eb3ce"
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| 119 |
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}
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"reference_sha256": "bac12da8a241652cb75100a1b082b2be56806c9bf2fd20ce6f927f19683ea5b8",
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"bandwidth_m": 27.91515930403532,
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"params": {
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"seed": 20261001,
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"ks": [
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| 126 |
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|
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|
| 129 |
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],
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| 130 |
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"knn_c2st_k": 5,
|
| 131 |
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"rf_trees": 300,
|
| 132 |
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"cv_folds": 5,
|
| 133 |
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"bw_multiples": [
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| 134 |
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0.5,
|
| 135 |
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1.0,
|
| 136 |
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2.0
|
| 137 |
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],
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| 138 |
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"bw_max_cells": 4000,
|
| 139 |
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"en_pcs": 100,
|
| 140 |
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"en_lb_max_queries_all_cells": 20000,
|
| 141 |
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"en_all_cells": true
|
| 142 |
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},
|
| 143 |
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"n_representative_rows": null,
|
| 144 |
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"fetched_from_server2": [],
|
| 145 |
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"code_sha256": {
|
| 146 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/extra_metrics.py": "e76a6cd4c1c5ef7184e97755edcd0f48726b56ba251545a5b5a4b12bb766b0c2",
|
| 147 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/ft_common.py": "4a6366b0f22208cd58714fc0261b8840c643b9d4569704d560cfd93534cbc747",
|
| 148 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 149 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/tools/stage_b_embed.py": "d056cfdf38fb0e5f478756f370174e993b75d0c973c48e02e21749175a4ca2da"
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},
|
| 151 |
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"seconds": 1385.8,
|
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"max_abs_diff_k10_pooled": 0.0
|
| 153 |
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}
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