junidude14 commited on
Commit
cf0616a
·
verified ·
1 Parent(s): 69567b6

Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/cv2/state_types.tsv ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 2589
3
+ B cell|Memory B cell B cell 2961
4
+ B cell|Naive B cell B cell 4556
5
+ B cell|Plasma cell B cell 541
6
+ B cell|Transitional B cell B cell 1562
7
+ DC|ASDC DC 47
8
+ DC|cDC1 DC 137
9
+ DC|cDC2 DC 2467
10
+ DC|pDC DC 782
11
+ Monocyte|CD14 monocyte Monocyte 18919
12
+ Monocyte|CD16 monocyte Monocyte 6452
13
+ Monocyte|Intermediate monocyte Monocyte 14396
14
+ NK cell|CD56bright NK cell NK cell 2381
15
+ NK cell|CD56dim NK cell NK cell 14788
16
+ NK cell|Proliferating NK cell NK cell 5062
17
+ Other|Erythrocyte Other 5595
18
+ Other|ILC Other 1939
19
+ Other|Platelet Other 1774
20
+ Other|Progenitor cell Other 147
21
+ T cell|CD8aa T cell 7187
22
+ T cell|DN T cell T cell 10504
23
+ T cell|MAIT T cell 13447
24
+ T cell|Memory CD4 T cell T cell 18787
25
+ T cell|Memory CD8 T cell T cell 16928
26
+ T cell|Naive CD4 T cell T cell 13053
27
+ T cell|Naive CD8 T cell T cell 12884
28
+ T cell|Proliferating T cell T cell 1385
29
+ T cell|Treg T cell 4710
30
+ T cell|gdT T cell 6127
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/cv2_full/SPLIT.json ADDED
@@ -0,0 +1,63 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "giroux2022",
3
+ "kind": "cv",
4
+ "idx": 2,
5
+ "reference": [
6
+ "450905_d0",
7
+ "450905_d14",
8
+ "0B943B_d0",
9
+ "0B943B_d14",
10
+ "B85D75_d0",
11
+ "B85D75_d7",
12
+ "82CCF5_d0",
13
+ "82CCF5_d7",
14
+ "82CCF5_d14",
15
+ "BAAF62_d0",
16
+ "BAAF62_d7",
17
+ "BAAF62_d14",
18
+ "0BF51C_d0",
19
+ "0BF51C_d7",
20
+ "0BF51C_d14",
21
+ "7085CA_d0",
22
+ "7085CA_d7",
23
+ "7085CA_d14"
24
+ ],
25
+ "mixture": [
26
+ "2AD75E_d0",
27
+ "2AD75E_d7",
28
+ "2AD75E_d14",
29
+ "180E1A_d0",
30
+ "180E1A_d7",
31
+ "180E1A_d14"
32
+ ],
33
+ "run_json_check": true,
34
+ "n_train_rows": 15,
35
+ "n_inner_val_rows": 3,
36
+ "n_reference_samples": 18,
37
+ "n_mixture_samples": 6,
38
+ "reference_cells": 192107,
39
+ "states": 29,
40
+ "states_merged_minor": 0,
41
+ "types": [
42
+ "B cell",
43
+ "DC",
44
+ "Monocyte",
45
+ "NK cell",
46
+ "Other",
47
+ "T cell"
48
+ ],
49
+ "missing_types": [],
50
+ "bp_axis_genes": 17988,
51
+ "genes_kept": 15636,
52
+ "genes_dropped_not_bulk_valid": 479,
53
+ "genes_dropped_zero_reference": 1873,
54
+ "gene_mode": "full",
55
+ "aggregates_sha256": "6c0178da65a0929edf63875236d62080254279829c59603e489edeb64ae86e2f",
56
+ "files": {
57
+ "reference.tsv.gz": "1be7745a9f815b56dc56e73eb19f36cbf554ffde5958c55b4a68dce920041ed0",
58
+ "state_types.tsv": "fd792f2f198c8a9f3a6d7a49d8e18f52d625e190850aabab6035fa2c70d9ec1d",
59
+ "mixture.tsv.gz": "5cdc216aacd586649b57b1ab5fc44856da1439fd23ee3cf41fb92b83434a4d45"
60
+ },
61
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
62
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
63
+ }
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/cv2_full/state_types.tsv ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 2589
3
+ B cell|Memory B cell B cell 2961
4
+ B cell|Naive B cell B cell 4556
5
+ B cell|Plasma cell B cell 541
6
+ B cell|Transitional B cell B cell 1562
7
+ DC|ASDC DC 47
8
+ DC|cDC1 DC 137
9
+ DC|cDC2 DC 2467
10
+ DC|pDC DC 782
11
+ Monocyte|CD14 monocyte Monocyte 18919
12
+ Monocyte|CD16 monocyte Monocyte 6452
13
+ Monocyte|Intermediate monocyte Monocyte 14396
14
+ NK cell|CD56bright NK cell NK cell 2381
15
+ NK cell|CD56dim NK cell NK cell 14788
16
+ NK cell|Proliferating NK cell NK cell 5062
17
+ Other|Erythrocyte Other 5595
18
+ Other|ILC Other 1939
19
+ Other|Platelet Other 1774
20
+ Other|Progenitor cell Other 147
21
+ T cell|CD8aa T cell 7187
22
+ T cell|DN T cell T cell 10504
23
+ T cell|MAIT T cell 13447
24
+ T cell|Memory CD4 T cell T cell 18787
25
+ T cell|Memory CD8 T cell T cell 16928
26
+ T cell|Naive CD4 T cell T cell 13053
27
+ T cell|Naive CD8 T cell T cell 12884
28
+ T cell|Proliferating T cell T cell 1385
29
+ T cell|Treg T cell 4710
30
+ T cell|gdT T cell 6127
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/cv3/SPLIT.json ADDED
@@ -0,0 +1,62 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "giroux2022",
3
+ "kind": "cv",
4
+ "idx": 3,
5
+ "reference": [
6
+ "450905_d0",
7
+ "450905_d14",
8
+ "7085CA_d0",
9
+ "7085CA_d7",
10
+ "7085CA_d14",
11
+ "2AD75E_d0",
12
+ "2AD75E_d7",
13
+ "2AD75E_d14",
14
+ "B85D75_d0",
15
+ "B85D75_d7",
16
+ "180E1A_d0",
17
+ "180E1A_d7",
18
+ "180E1A_d14",
19
+ "0BF51C_d0",
20
+ "0BF51C_d7",
21
+ "0BF51C_d14",
22
+ "0B943B_d0",
23
+ "0B943B_d14"
24
+ ],
25
+ "mixture": [
26
+ "82CCF5_d0",
27
+ "82CCF5_d7",
28
+ "82CCF5_d14",
29
+ "BAAF62_d0",
30
+ "BAAF62_d7",
31
+ "BAAF62_d14"
32
+ ],
33
+ "run_json_check": true,
34
+ "n_train_rows": 16,
35
+ "n_inner_val_rows": 2,
36
+ "n_reference_samples": 18,
37
+ "n_mixture_samples": 6,
38
+ "reference_cells": 188248,
39
+ "states": 29,
40
+ "states_merged_minor": 0,
41
+ "types": [
42
+ "B cell",
43
+ "DC",
44
+ "Monocyte",
45
+ "NK cell",
46
+ "Other",
47
+ "T cell"
48
+ ],
49
+ "missing_types": [],
50
+ "bp_axis_genes": 5556,
51
+ "genes_kept": 5425,
52
+ "genes_dropped_not_bulk_valid": 0,
53
+ "genes_dropped_zero_reference": 131,
54
+ "aggregates_sha256": "9b80e097aafc8e9f46bba6166b50af98391afa05d8584acf7066a697762db5c7",
55
+ "files": {
56
+ "reference.tsv.gz": "5d08199b60466605c9830f21ded190bde277d5c3a44e6e427b4554809404a38b",
57
+ "state_types.tsv": "bf861c8fd2dea333c6d72e888d7cb6f56c96716395f26506db3cce1e05e04407",
58
+ "mixture.tsv.gz": "fd5d006200df41beca3a3d82d64d3e185fcd2242504b7189d00df378a9f8d740"
59
+ },
60
+ "tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
61
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
62
+ }