Hugging Face's logo

Datasets:
junidude14
/
PBISC-data

Modalities:
Tabular
Text
Formats:
parquet
Languages:
English
Size:
< 1K
Tags:
single-cell-rna-seq
bulk-rna-seq
diffusion
Libraries:
Datasets
pandas
Polars
Dataset card Data Studio Files
xet
 Community
1
junidude14 commited on
Commit
d02a4c3
·
verified ·
1 Parent(s): 7f3237b

Archive 4 checkpoints (1-4)

Browse files
Files changed (4) hide show
  1. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/fewshot3/SPLIT.json +200 -0
  2. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/fewshot3/state_types.tsv +29 -0
  3. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/fewshot3_full/SPLIT.json +201 -0
  4. paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/fewshot3_full/state_types.tsv +29 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/fewshot3/SPLIT.json ADDED
@@ -0,0 +1,200 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "imperial_eskd",
3
+ "kind": "fewshot",
4
+ "idx": 3,
5
+ "reference": [
6
+ "C31_1304",
7
+ "C31_2004",
8
+ "C31_2704",
9
+ "C40_1504",
10
+ "C40_2204",
11
+ "C40_0105",
12
+ "C108_2204",
13
+ "C108_1501",
14
+ "C108_1801",
15
+ "C108_2201",
16
+ "C240_2905",
17
+ "C251_2905"
18
+ ],
19
+ "mixture": [
20
+ "C20_1004",
21
+ "C20_1404",
22
+ "C21_1004",
23
+ "C21_1704",
24
+ "C21_2504",
25
+ "C23_2204",
26
+ "C33_1401",
27
+ "C33_1601",
28
+ "C33_1901",
29
+ "C34_1404",
30
+ "C34_2104",
31
+ "C34_2504",
32
+ "C36_1504",
33
+ "C36_1704",
34
+ "C36_2104",
35
+ "C42_1504",
36
+ "C42_2204",
37
+ "C42_2704",
38
+ "C58_1604",
39
+ "C58_2501",
40
+ "C58_2901",
41
+ "C58_0102",
42
+ "C58_0402",
43
+ "C58_1003",
44
+ "C60_2504",
45
+ "C63_1704",
46
+ "C63_2404",
47
+ "C63_2904",
48
+ "C65_1704",
49
+ "C65_2104",
50
+ "C65_2504",
51
+ "C69_1804",
52
+ "C82_2504",
53
+ "C85_2004",
54
+ "C93_2104",
55
+ "C93_2704",
56
+ "C93_0405",
57
+ "C101_0601",
58
+ "C101_1101",
59
+ "C101_1301",
60
+ "C101_1801",
61
+ "C101_2001",
62
+ "C101_2502",
63
+ "C103_2204",
64
+ "C104_2204",
65
+ "C106_2204",
66
+ "C113_0605",
67
+ "C123_2404",
68
+ "C123_2904",
69
+ "C123_0505",
70
+ "C124_2404",
71
+ "C124_2704",
72
+ "C124_0105",
73
+ "C126_2504",
74
+ "C126_3004",
75
+ "C126_0605",
76
+ "C127_2504",
77
+ "C127_0405",
78
+ "C127_1105",
79
+ "C128_2504",
80
+ "C128_0405",
81
+ "C128_1105",
82
+ "C132_2804",
83
+ "C132_0205",
84
+ "C132_1105",
85
+ "C137_3004",
86
+ "C137_2502",
87
+ "C138_3004",
88
+ "C138_2301",
89
+ "C138_3001",
90
+ "C138_0202",
91
+ "C138_0402",
92
+ "C140_3004",
93
+ "C140_2801",
94
+ "C140_3001",
95
+ "C140_0202",
96
+ "C140_0402",
97
+ "C140_0602",
98
+ "C140_0902",
99
+ "C140_1103",
100
+ "C141_2001",
101
+ "C141_2201",
102
+ "C141_3001",
103
+ "C141_0202",
104
+ "C142_3004",
105
+ "C145_3004",
106
+ "C145_0701",
107
+ "C145_1201",
108
+ "C145_1401",
109
+ "C145_1901",
110
+ "C145_2301",
111
+ "C146_3004",
112
+ "C146_1201",
113
+ "C146_1401",
114
+ "C146_1601",
115
+ "C146_1901",
116
+ "C146_2301",
117
+ "C146_2701",
118
+ "C146_2502",
119
+ "C147_3004",
120
+ "C147_1401",
121
+ "C147_1901",
122
+ "C152_0405",
123
+ "C161_1105",
124
+ "C164_1105",
125
+ "C167_1205",
126
+ "C168_1205",
127
+ "C168_2001",
128
+ "C168_2301",
129
+ "C168_3001",
130
+ "C168_0202",
131
+ "C168_0403",
132
+ "C169_1205",
133
+ "C169_2001",
134
+ "C169_2301",
135
+ "C169_0202",
136
+ "C169_0403",
137
+ "C170_1205",
138
+ "C170_2301",
139
+ "C170_0202",
140
+ "C170_0402",
141
+ "C170_0403",
142
+ "C187_2605",
143
+ "C187_1201",
144
+ "C187_1401",
145
+ "C187_1901",
146
+ "C187_2301",
147
+ "C187_2502",
148
+ "C190_2605",
149
+ "C190_2901",
150
+ "C190_0102",
151
+ "C190_0302",
152
+ "C190_0502",
153
+ "C190_0802",
154
+ "C190_1002",
155
+ "C190_0903",
156
+ "C193_2605",
157
+ "C195_2605",
158
+ "C197_2605",
159
+ "C212_2705",
160
+ "C214_2705",
161
+ "C234_2805",
162
+ "C237_2805",
163
+ "C238_2905",
164
+ "C246_2905"
165
+ ],
166
+ "train_donors": [
167
+ "C108",
168
+ "C240",
169
+ "C251",
170
+ "C31",
171
+ "C40"
172
+ ],
173
+ "run_json_check": true,
174
+ "n_reference_samples": 12,
175
+ "n_mixture_samples": 145,
176
+ "reference_cells": 34467,
177
+ "states": 28,
178
+ "states_merged_minor": 3,
179
+ "types": [
180
+ "B cell",
181
+ "DC",
182
+ "Monocyte",
183
+ "NK cell",
184
+ "Other",
185
+ "T cell"
186
+ ],
187
+ "missing_types": [],
188
+ "bp_axis_genes": 5911,
189
+ "genes_kept": 5620,
190
+ "genes_dropped_not_bulk_valid": 0,
191
+ "genes_dropped_zero_reference": 291,
192
+ "aggregates_sha256": "80b9c3401d8d4c724088317828a5c5095a5157ebc66d099e8399b6f948e507f8",
193
+ "files": {
194
+ "reference.tsv.gz": "e1b1da29369734ebb46ed75f069737250070be0158b86cc274e9fc13a6d6d5f1",
195
+ "state_types.tsv": "c3876151c5d323fc0b42c3b9cf798e0eb989e73d4914e84f0cfa4111284bafc2",
196
+ "mixture.tsv.gz": "51ef42a77643118aadbad76079d6c651e2199178646cc9fd77cf27f099a581d6"
197
+ },
198
+ "tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
199
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
200
+ }
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/fewshot3/state_types.tsv ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 319
3
+ B cell|Memory B cell B cell 697
4
+ B cell|Naive B cell B cell 848
5
+ B cell|Plasma cell B cell 236
6
+ B cell|Transitional B cell B cell 151
7
+ DC|cDC2 DC 394
8
+ DC|pDC DC 185
9
+ Monocyte|CD14 monocyte Monocyte 2157
10
+ Monocyte|CD16 monocyte Monocyte 2929
11
+ Monocyte|Intermediate monocyte Monocyte 865
12
+ NK cell|CD56bright NK cell NK cell 575
13
+ NK cell|CD56dim NK cell NK cell 2841
14
+ NK cell|Proliferating NK cell NK cell 891
15
+ Other|ILC Other 50
16
+ Other|Platelet Other 71
17
+ Other|Progenitor cell Other 51
18
+ T cell|CD8aa T cell 690
19
+ T cell|DN T cell T cell 214
20
+ T cell|MAIT T cell 280
21
+ T cell|Memory CD4 T cell T cell 8261
22
+ T cell|Memory CD8 T cell T cell 5060
23
+ T cell|Naive CD4 T cell T cell 2067
24
+ T cell|Naive CD8 T cell T cell 1633
25
+ T cell|Proliferating T cell T cell 206
26
+ T cell|Treg T cell 1221
27
+ T cell|gdT T cell 1528
28
+ DC|minor DC 34
29
+ Other|minor Other 13
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/fewshot3_full/SPLIT.json ADDED
@@ -0,0 +1,201 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "imperial_eskd",
3
+ "kind": "fewshot",
4
+ "idx": 3,
5
+ "reference": [
6
+ "C31_1304",
7
+ "C31_2004",
8
+ "C31_2704",
9
+ "C40_1504",
10
+ "C40_2204",
11
+ "C40_0105",
12
+ "C108_2204",
13
+ "C108_1501",
14
+ "C108_1801",
15
+ "C108_2201",
16
+ "C240_2905",
17
+ "C251_2905"
18
+ ],
19
+ "mixture": [
20
+ "C20_1004",
21
+ "C20_1404",
22
+ "C21_1004",
23
+ "C21_1704",
24
+ "C21_2504",
25
+ "C23_2204",
26
+ "C33_1401",
27
+ "C33_1601",
28
+ "C33_1901",
29
+ "C34_1404",
30
+ "C34_2104",
31
+ "C34_2504",
32
+ "C36_1504",
33
+ "C36_1704",
34
+ "C36_2104",
35
+ "C42_1504",
36
+ "C42_2204",
37
+ "C42_2704",
38
+ "C58_1604",
39
+ "C58_2501",
40
+ "C58_2901",
41
+ "C58_0102",
42
+ "C58_0402",
43
+ "C58_1003",
44
+ "C60_2504",
45
+ "C63_1704",
46
+ "C63_2404",
47
+ "C63_2904",
48
+ "C65_1704",
49
+ "C65_2104",
50
+ "C65_2504",
51
+ "C69_1804",
52
+ "C82_2504",
53
+ "C85_2004",
54
+ "C93_2104",
55
+ "C93_2704",
56
+ "C93_0405",
57
+ "C101_0601",
58
+ "C101_1101",
59
+ "C101_1301",
60
+ "C101_1801",
61
+ "C101_2001",
62
+ "C101_2502",
63
+ "C103_2204",
64
+ "C104_2204",
65
+ "C106_2204",
66
+ "C113_0605",
67
+ "C123_2404",
68
+ "C123_2904",
69
+ "C123_0505",
70
+ "C124_2404",
71
+ "C124_2704",
72
+ "C124_0105",
73
+ "C126_2504",
74
+ "C126_3004",
75
+ "C126_0605",
76
+ "C127_2504",
77
+ "C127_0405",
78
+ "C127_1105",
79
+ "C128_2504",
80
+ "C128_0405",
81
+ "C128_1105",
82
+ "C132_2804",
83
+ "C132_0205",
84
+ "C132_1105",
85
+ "C137_3004",
86
+ "C137_2502",
87
+ "C138_3004",
88
+ "C138_2301",
89
+ "C138_3001",
90
+ "C138_0202",
91
+ "C138_0402",
92
+ "C140_3004",
93
+ "C140_2801",
94
+ "C140_3001",
95
+ "C140_0202",
96
+ "C140_0402",
97
+ "C140_0602",
98
+ "C140_0902",
99
+ "C140_1103",
100
+ "C141_2001",
101
+ "C141_2201",
102
+ "C141_3001",
103
+ "C141_0202",
104
+ "C142_3004",
105
+ "C145_3004",
106
+ "C145_0701",
107
+ "C145_1201",
108
+ "C145_1401",
109
+ "C145_1901",
110
+ "C145_2301",
111
+ "C146_3004",
112
+ "C146_1201",
113
+ "C146_1401",
114
+ "C146_1601",
115
+ "C146_1901",
116
+ "C146_2301",
117
+ "C146_2701",
118
+ "C146_2502",
119
+ "C147_3004",
120
+ "C147_1401",
121
+ "C147_1901",
122
+ "C152_0405",
123
+ "C161_1105",
124
+ "C164_1105",
125
+ "C167_1205",
126
+ "C168_1205",
127
+ "C168_2001",
128
+ "C168_2301",
129
+ "C168_3001",
130
+ "C168_0202",
131
+ "C168_0403",
132
+ "C169_1205",
133
+ "C169_2001",
134
+ "C169_2301",
135
+ "C169_0202",
136
+ "C169_0403",
137
+ "C170_1205",
138
+ "C170_2301",
139
+ "C170_0202",
140
+ "C170_0402",
141
+ "C170_0403",
142
+ "C187_2605",
143
+ "C187_1201",
144
+ "C187_1401",
145
+ "C187_1901",
146
+ "C187_2301",
147
+ "C187_2502",
148
+ "C190_2605",
149
+ "C190_2901",
150
+ "C190_0102",
151
+ "C190_0302",
152
+ "C190_0502",
153
+ "C190_0802",
154
+ "C190_1002",
155
+ "C190_0903",
156
+ "C193_2605",
157
+ "C195_2605",
158
+ "C197_2605",
159
+ "C212_2705",
160
+ "C214_2705",
161
+ "C234_2805",
162
+ "C237_2805",
163
+ "C238_2905",
164
+ "C246_2905"
165
+ ],
166
+ "train_donors": [
167
+ "C108",
168
+ "C240",
169
+ "C251",
170
+ "C31",
171
+ "C40"
172
+ ],
173
+ "run_json_check": true,
174
+ "n_reference_samples": 12,
175
+ "n_mixture_samples": 145,
176
+ "reference_cells": 34467,
177
+ "states": 28,
178
+ "states_merged_minor": 3,
179
+ "types": [
180
+ "B cell",
181
+ "DC",
182
+ "Monocyte",
183
+ "NK cell",
184
+ "Other",
185
+ "T cell"
186
+ ],
187
+ "missing_types": [],
188
+ "bp_axis_genes": 18599,
189
+ "genes_kept": 15618,
190
+ "genes_dropped_not_bulk_valid": 0,
191
+ "genes_dropped_zero_reference": 2981,
192
+ "gene_mode": "full",
193
+ "aggregates_sha256": "681a49cc9eb86b0d8b313bc417eef9b11c122894922181cf17a62765612ad1d4",
194
+ "files": {
195
+ "reference.tsv.gz": "8779e1ecb3ad9f62c81f34a3fb05b5c758ed87373d3113731d8f9553926d3b6e",
196
+ "state_types.tsv": "c3876151c5d323fc0b42c3b9cf798e0eb989e73d4914e84f0cfa4111284bafc2",
197
+ "mixture.tsv.gz": "14c788e9e809497d9523db11e861345d2475ab0dfb2d9d01ea5d9978062d2d42"
198
+ },
199
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
200
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
201
+ }
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/imperial_eskd/fewshot3_full/state_types.tsv ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 319
3
+ B cell|Memory B cell B cell 697
4
+ B cell|Naive B cell B cell 848
5
+ B cell|Plasma cell B cell 236
6
+ B cell|Transitional B cell B cell 151
7
+ DC|cDC2 DC 394
8
+ DC|pDC DC 185
9
+ Monocyte|CD14 monocyte Monocyte 2157
10
+ Monocyte|CD16 monocyte Monocyte 2929
11
+ Monocyte|Intermediate monocyte Monocyte 865
12
+ NK cell|CD56bright NK cell NK cell 575
13
+ NK cell|CD56dim NK cell NK cell 2841
14
+ NK cell|Proliferating NK cell NK cell 891
15
+ Other|ILC Other 50
16
+ Other|Platelet Other 71
17
+ Other|Progenitor cell Other 51
18
+ T cell|CD8aa T cell 690
19
+ T cell|DN T cell T cell 214
20
+ T cell|MAIT T cell 280
21
+ T cell|Memory CD4 T cell T cell 8261
22
+ T cell|Memory CD8 T cell T cell 5060
23
+ T cell|Naive CD4 T cell T cell 2067
24
+ T cell|Naive CD8 T cell T cell 1633
25
+ T cell|Proliferating T cell T cell 206
26
+ T cell|Treg T cell 1221
27
+ T cell|gdT T cell 1528
28
+ DC|minor DC 34
29
+ Other|minor Other 13