Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/cibersortx/giroux2022/cv0/out_fractions/CIBERSORTx_Adjusted.txt

@@ -0,0 +1,5 @@
+Mixture	B cell	DC	Monocyte	NK cell	Other	T cell	P-value	Correlation	RMSE
+450905_d0	0.00000000000000000	0.00000000000000000	0.59867701807811780	0.06613868846106621	0.17631876973745664	0.15886552372335935	9999.00000000000000000	0.84057537802265991	0.54207152072414966
+450905_d14	0.00893464337157148	0.02727066088382175	0.33624308994816859	0.12478452850843884	0.32667117208819196	0.17609590519980736	9999.00000000000000000	0.85806241613592849	0.57306279352816669
+B85D75_d0	0.01963070972318911	0.00442816234736727	0.09752119950382036	0.04007052264536354	0.12218939344116458	0.71616001233909510	9999.00000000000000000	0.82075732572838356	0.75401299941906530
+B85D75_d7	0.06064701178420941	0.00000000000000000	0.14978098749888610	0.00691218102832844	0.09366006319930466	0.68899975648927136	9999.00000000000000000	0.81632105363504059	0.72040809095515734

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot4_full/bp/theta_final.csv

@@ -0,0 +1,78 @@
+"","B cell","DC","Monocyte","NK cell","Other","T cell"
+"Abd-PS04",0.0503890232169214,0.168724043991138,0.610620365319908,0.0558092041003524,0.0298216108873376,0.0846357524843425
+"Abd-PS05",0.484909483909823,0.103254162469578,0.145404847356038,0.0739043047552304,0.0785847810640602,0.113942420445271
+"Abd-PS07",0.0345880186569743,0.124150650428531,0.0307555109660413,0.269191791016265,0.00655632043757425,0.534757708494614
+"Abd-PS19",0.130540764420041,0.091884907970912,0.275826007542241,0.113749422664356,0.029849533198963,0.358149364203487
+"Abd-PS20",0.607305800730868,3.91383068850375e-06,0.00506263349359845,3.04912432715731e-06,1.62306139098347e-06,0.387622979759127
+"Abd-PS23",0.329500269497769,0.0203364497050031,0.207356887081269,0.0126180683331195,0.158147002075762,0.272041323307076
+"Abd-PS27",0.0595267573722258,0.0309772724483787,0.13230705518791,2.03428404679254e-06,0.0559334532054365,0.721253427502002
+"Abd-S103",0.306988309279796,0.0670139938683389,0.142785803376151,0.056881007779307,0.169527282410922,0.256803603285485
+"Abd-S120",0.0590231334235074,0.017265038410928,0.529121106691007,0.140121375983143,0.0154989107820572,0.238970434709357
+"Abd-S123",0.0770331884145206,0.0357859033114115,0.496381713882175,0.167023563607495,0.0785036080458386,0.145272022738559
+"Abd-S156",0.051917599350559,0.00010029197472427,0.512095122242478,0.0799137466713526,0.165684856504915,0.190288383255971
+"Abd-S39",0.0596440730805466,2.51763349178336e-06,0.512043540055425,0.100874428911953,0.199489605362764,0.12794583495582
+"Abd-S42",0.114137471777237,0.00246426831416213,0.271318872000376,0.264994783278213,0.0235707498658351,0.323513854764177
+"Abd-S47",0.281073930595566,2.34256453287857e-06,0.0463826491943195,0.018067874855302,0.00330349463595717,0.651169708154323
+"Abd-S51",0.284506096768079,0.000914812075414044,0.400283513538689,0.129026024595116,0.0308785804972322,0.15439097252547
+"Abd-S54",0.153245999227357,0.0334667658450981,0.231161744578666,0.336399428324776,0.0274949696870106,0.218231092337092
+"Abd-S57",3.6793112498638e-06,0.0785170813343831,0.3926388687976,0.11660125480449,0.0579053774833737,0.354333738268903
+"Abd-S66",0.16257335190659,0.00362644821580107,0.474992939079598,0.207794415054782,0.0142122602857628,0.136800585457466
+"Abd-S79",0.225696449297697,0.00437209969406507,0.365176528274506,0.116255297558555,0.0173057538560058,0.271193871319171
+"Abd-S83",0.0172020049501993,0.0564454118952875,0.618042782100279,0.110617423414497,0.120350640488098,0.0773417371516388
+"Abd-S98",0.00768855066724962,0.0371477729968369,0.590811306998198,0.177262676443251,0.0465696658270664,0.140520027067398
+"HC01",0.102932978357477,0.14112383822999,0.186046527212701,0.143857175911585,0.0039686322414007,0.422070848046846
+"HC05",0.0997991035685309,0.059430979704375,0.0926096833254575,0.276862368139169,0.000359949694486132,0.470937915567982
+"HC07",0.0513917847187226,0.113265594965842,0.240148333720566,0.366725136527933,0.00384735355197398,0.224621796514962
+"HC09",0.0496576125043726,0.0902827783250179,0.141292321448023,0.263347451345299,1.61962026039022e-06,0.455418216757027
+"HC12",0.0521473302864716,0.0834354292550553,0.151004592619996,0.309384983753018,0.0106362566005714,0.393391407484888
+"HC13",0.0824839261880324,0.0660960001765295,0.105703382038596,0.30580319364447,0.0108545955075107,0.429058902444862
+"HC16",0.0383202103376037,0.0559407247752834,0.0956662669313425,0.478730338471709,0.00802038726628321,0.323322072217778
+"IC10",0.136046521815794,0.00437826987704273,0.162929277840931,0.160581542664003,0.0535703824633022,0.482494005338927
+"IC15",0.129240541877798,0.0144544066290025,0.265918825564753,0.255256420635604,0.00343756652273515,0.331692238770108
+"IC16",0.161206886707194,3.6655296010024e-06,0.536404018753428,0.14322911188192,0.0328895710810089,0.126266746046849
+"IC19",0.134712426494105,0.0652903349121259,0.399636261407462,0.0785086347681571,0.0410044656963802,0.28084787672177
+"IC22",0.0167789133258203,0.0954898016004402,0.538831114034016,0.12260082092972,0.0142171515656147,0.212082198544388
+"PHC01",0.200492872755863,0.0629822802827776,0.0913119840535049,0.12908309833514,0.00905689792389058,0.507072866648823
+"PHC02",0.226813241180372,0.0979635689691754,0.120048678776082,0.0362073707704774,0.00319702449291837,0.515770115810974
+"PHC03",0.234846665103995,0.043505919844968,0.0448024692257592,0.0642422117592258,4.10557286130792e-07,0.612602323508766
+"PHC05",0.143018556652077,0.0863437240373051,0.138255688977471,0.10227232714222,0.00976727157866995,0.520342431612257
+"PIC01",0.114828818747007,0.00915768823630204,0.0948665841643638,0.0592624211597768,0.0181564031697324,0.703728084522818
+"PIC02",0.40855938947097,0.036062358778086,0.0899514350949009,0.0399936074736001,0.00672987778101571,0.418703331401427
+"PIC04",0.112649047881242,0.042467043376813,0.436310974507459,0.0289645700295704,0.0114414957350373,0.368166868469877
+"PIC05",0.23016946207523,0.0611563127425874,0.225340131539818,0.000564527207370494,0.0043905698501616,0.478378996584833
+"Res-PS02",0.160048067505771,2.84369061109525e-06,0.282310575079591,0.0762578155413684,0.0322347351485558,0.449145963034103
+"Res-PS03",0.314729596788514,0.0642542870664344,0.366352473146714,0.00988879093532818,0.0117303244707151,0.233044527592295
+"Res-PS12",0.362107469116125,0.00711379421374055,0.226510384721543,1.81946595120159e-05,0.0127810933309497,0.39146906395813
+"Res-PS16",0.259220850037936,0.000517955945266182,0.027122133555396,2.44346529543319e-06,0.0396188585368656,0.67351775845924
+"Res-PS21",0.128557410088594,0.0317324191146171,0.320822738476455,0.18773301959102,0.0698715783303598,0.261282834398954
+"Res-PS25",0.478138617589199,5.46914448216899e-06,0.088413063054906,2.4572257577711e-06,1.22201648356288e-05,0.433428172820819
+"Res-PS26",0.24889143924284,4.45313250397058e-06,0.0853434373409112,1.91593307832363e-05,1.04189814217489e-06,0.665740469054819
+"Res-S10",0.0938760348114316,0.0014950559389576,0.107079829549836,0.000221096187127568,0.152708307158092,0.644619676354555
+"Res-S125",0.184474511543663,5.63045733374282e-06,0.212469346080627,0.192727433594595,0.000376755689965114,0.409946322633816
+"Res-S127",0.0942278134322625,0.0461570091230813,0.492277563653848,0.0857528267133492,0.0173269564753686,0.264257830602091
+"Res-S136",0.0508120506179794,0.0518290627527161,0.531915233786632,0.0372450333513239,1.15991391096429e-05,0.328187020352238
+"Res-S139",0.0198044884627549,0.0811154551330524,0.392021247189146,0.34254637104429,1.39917389123712e-06,0.164511038996866
+"Res-S146",0.178838181935378,0.00108153344254027,0.325392076399638,0.128879878009474,0.00467092705172177,0.361137403161247
+"Res-S149",0.153554936043079,0.00010922135320487,0.477550589539035,0.199610768671433,0.00629232995598262,0.162882154437266
+"Res-S150",0.160588159736909,0.182776468086032,0.372504172834095,0.158223502704036,0.0750026266568188,0.0509050699821103
+"Res-S164",0.136376720031388,0.0753227305609428,0.127081455399254,0.109622192435999,0.00779401730368851,0.543802884268727
+"Res-S166",0.328040515472219,2.77801981569832e-06,0.312486353391479,0.157572107115993,0.0078612769491928,0.1940369690513
+"Res-S174",0.10530178537112,0.0438055384745138,0.185433654649612,0.0828039406230552,0.0518513081863324,0.530803772695366
+"Res-S177",0.268192671955598,0.000877006332024598,0.10320920821499,0.106120587815787,2.58134272095024e-06,0.52159794433888
+"Res-S184",0.0917590465755168,0.0104858408934508,0.318919246895531,0.234844635438024,0.02615070047069,0.317840529726788
+"Res-S19",0.0530001871501555,0.00177571695901279,0.248585286817497,0.242168852423358,0.11983416135534,0.334635795294637
+"Res-S26",0.101250560303868,0.00582383049559535,0.299512868047311,0.173453295566742,0.053022399228952,0.366937046357531
+"Res-S40",0.133207833545877,0.0538635159568836,0.261318931411365,0.0963262459536075,0.0351399627507931,0.420143510381474
+"Res-S77",0.139503304782003,0.000791622251744169,0.455549958849036,0.0248542886105581,0.0697591461336256,0.309541679373033
+"Res-S87",3.68097031850597e-05,0.103082441673257,0.408076422550189,0.197286159872954,0.0655118047567941,0.226006361443621
+"Skin-S140",0.154407907429963,0.003495214256966,0.484469239163703,0.0492078472298936,0.0743078447909715,0.234111947128503
+"Skin-S152",0.0859379557534181,0.103225729906759,0.321237061864185,0.135377255701226,1.69829309926e-06,0.354220298481312
+"Skin-S38",0.082029448079399,0.0261553198982059,0.138528274704971,0.0978170213846815,0.011268966802427,0.644200969130315
+"Skin-S43",0.0498384606993062,0.0259685635566824,0.229847781662087,0.0763119825769912,0.132606261387304,0.485426950117628
+"Skin-S52",0.200940214982906,0.00639331748630818,0.101845883926671,0.000156953084770813,0.180650296901888,0.510013333617456
+"Skin-S74",0.0104284699000698,0.0230422374097155,0.0281299281410477,0.268377550014799,0.00315869476873348,0.666863119765635
+"Uri-S134",0.0420687407352916,0.0718345306020158,0.463853817659476,0.117045878100635,0.0231228586937549,0.282074174208827
+"Uri-S147",0.189976800891616,0.0108834803172089,0.189050720580383,0.0460388827506704,0.00268981747761345,0.561360297982508
+"Uri-S157",0.286820788391353,0.00660402133142932,0.294270783210201,0.127324307559406,0.00382706639308001,0.281153033114531
+"Uri-S20",0.0847589892804574,0.00421541199149553,0.422167880254083,0.094673835781114,0.0550418661105898,0.33914201658226
+"Uri-S93",0.203877246087317,0.0579041849755424,0.295725947138947,0.057728144060622,0.176253643614269,0.208510834123303

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot4_full/bp/theta_first.csv

@@ -0,0 +1,78 @@
+"","B cell","DC","Monocyte","NK cell","Other","T cell"
+"Abd-PS04",0.00589661839202047,0.0568168555785598,0.611291676304209,3.65559927050521e-06,0.13403753678344,0.1919536573425
+"Abd-PS05",0.269430952362545,0.0182196013179628,0.131702506001597,1.01864209433713e-05,0.333563299357799,0.247073454539153
+"Abd-PS07",0.0127181073673856,0.0267344331037508,0.0351181526737536,0.134950697968062,0.10521597763986,0.685262631247188
+"Abd-PS19",0.0338435475944326,0.024388105726925,0.259034887752122,0.018813014839248,0.231321975606633,0.43259846848064
+"Abd-PS20",0.439777449791773,0.000241314059323158,3.02409730334624e-06,3.95798873623464e-06,0.0369418526984377,0.523032401364427
+"Abd-PS23",0.133289561898513,0.0147447810121653,0.159827597116914,4.18384673261041e-06,0.356116465727047,0.336017410398628
+"Abd-PS27",0.0129620114887472,0.0066452508819529,0.0799037706650753,3.03974795075069e-06,0.255431711546927,0.645054215669347
+"Abd-S103",0.158907069181975,0.00914389329200258,0.0909577124563751,6.74587551672472e-06,0.469010291493035,0.271974287701096
+"Abd-S120",0.0052725403387028,1.01976351154496e-05,0.514638656936394,0.0128678220280856,0.178425127255968,0.288785655805734
+"Abd-S123",0.014051895169846,0.00151665858110076,0.429726069907574,0.0339466401765928,0.3663297508451,0.154428985319787
+"Abd-S156",0.00596118107800012,4.43771798223013e-05,0.352009371558372,7.77892033416893e-06,0.595514005868835,0.0464632853946367
+"Abd-S39",0.0061826831223403,0.000221371740706632,0.344445991426115,0.0042457408940623,0.608212102228401,0.036692110588375
+"Abd-S42",0.0349065611992107,0.0352027027184352,0.163291011103201,0.0966421924249387,0.458260724844423,0.211696807709792
+"Abd-S47",0.210893893090155,0.00101774204014092,0.000845491785882678,0.0154214181760841,0.340619257864913,0.431202197042825
+"Abd-S51",0.168795903222096,0.03898944610354,0.268882863832215,0.00853414215629335,0.435991276344306,0.0788063683415505
+"Abd-S54",0.0759932082542859,0.0246002550926738,0.169937692271256,0.133906306156699,0.358220221032892,0.237342317192193
+"Abd-S57",3.86319357996398e-06,0.0403142501085223,0.303064943701788,0.0249594789054785,0.293716255859644,0.337941208230987
+"Abd-S66",0.0680952463912138,0.0171631524187221,0.365406852703719,0.0369019279078562,0.373077294907059,0.13935552567143
+"Abd-S79",0.125903127192851,0.0201204194884617,0.28359098930274,0.0188126737257173,0.273368135040622,0.278204655249608
+"Abd-S83",1.73484631328803e-05,0.0128701639336576,0.502089249905473,0.000707190996347219,0.384209207027708,0.100106839673682
+"Abd-S98",4.26573959212362e-06,0.000816021295877101,0.508365388091589,0.0341127659646373,0.240220694106505,0.2164808648018
+"HC01",0.0514473460703849,0.102554855507404,0.141603996803142,0.0394003793934384,0.239949275065681,0.42504414715995
+"HC05",0.0596959216728691,0.0249359510588912,0.0818911933672331,0.122729816065233,0.187480113062544,0.52326700477323
+"HC07",0.024791651120417,0.0677637215056657,0.219651417414521,0.135324915148761,0.200433379945017,0.352034914865618
+"HC09",0.0179844391690154,0.0561834337127907,0.116515900786692,0.100541573619204,0.233527904682467,0.475246748029831
+"HC12",0.0225801209407004,0.0542199833355336,0.107935950969257,0.121639934980978,0.284965239696318,0.408658770077212
+"HC13",0.0467052687031452,0.0360880135283289,0.0756923542276015,0.132070947966197,0.238832970870956,0.470610444703771
+"HC16",0.0169018671991412,0.0291702250189885,0.0720091209808923,0.217512944927971,0.2466424507899,0.417763391083108
+"IC10",0.0662058381776706,0.0130929023487208,0.0763940763966409,0.0463384834334004,0.428739627441248,0.36922907220232
+"IC15",0.0502114148463999,0.0711486269101968,0.164850396033062,0.0805676607437072,0.39650302465631,0.236718876810324
+"IC16",0.0666908538467314,2.67316713554145e-05,0.388803199271562,0.00305175442987167,0.462461495208652,0.0789659655718276
+"IC19",0.0598566541104818,0.0530443518186194,0.295947909444123,4.50903342803522e-05,0.38260478226457,0.208501212027926
+"IC22",7.80759054182542e-05,0.0293644109215329,0.488042196276869,0.01446534972609,0.161247392981787,0.306802574188302
+"PHC01",0.108177008448057,0.0387325070868987,0.0544969938333436,0.0541158514439,0.226443777867731,0.51803386132007
+"PHC02",0.141315532245756,0.019341441658284,0.134320847525716,0.00971994523891752,0.0352600329723932,0.660042200358933
+"PHC03",0.158239532077952,0.0212081974765986,0.035681578205868,0.0288282643216302,0.128392112990774,0.627650314927177
+"PHC05",0.0770501072281985,0.0668277323394805,0.109635527039373,0.0285661574462726,0.247015883530123,0.470904592416552
+"PIC01",0.0656256171960349,0.0107457516165802,0.0357311378760293,0.0244699020159995,0.276108079653228,0.587319511642127
+"PIC02",0.225525781979063,0.0115645695412888,0.0601012582745677,0.00904528410818256,0.176422134836623,0.517340971260275
+"PIC04",0.0514763959830931,0.021018266100288,0.356575190177875,2.77524581860188e-05,0.227645328478617,0.343257066801941
+"PIC05",0.133615226212731,0.0350727272151841,0.175471579686482,4.40863956611534e-06,0.196323782178409,0.459512276067628
+"Res-PS02",0.0854029096207185,5.42511696402105e-06,0.180121295104074,0.00793386148217408,0.27202597327981,0.45451053539626
+"Res-PS03",0.154957692787788,0.0244146528565665,0.306287842194575,3.05488338873089e-06,0.172302957912944,0.342033799364738
+"Res-PS12",0.201375095153799,0.0126309103974,0.160975710753257,6.04914131982821e-06,0.125795367105834,0.499216867448391
+"Res-PS16",0.143185595011402,0.00048952852807404,0.00048046183879644,3.47529262940595e-06,0.174897986522702,0.680942952806397
+"Res-PS21",0.0507195488143237,0.00438527494679616,0.278736746026474,0.068732356820953,0.304267823776812,0.29315824961464
+"Res-PS25",0.331431253545679,0.000508013277299494,0.0376150227494294,3.11198438798331e-06,0.191057550603441,0.439385047839763
+"Res-PS26",0.160779609730957,0.000158611204538259,0.0508164848589337,0.00396011799242947,0.101597739835582,0.682687436377559
+"Res-S10",0.0108008727437814,0.00521853964637483,0.0279839156649331,0.000145717446863718,0.496648024989804,0.459202929508243
+"Res-S125",0.122942183229139,0.000508140084085652,0.138412889129727,0.0789588992614204,0.238256126818361,0.420921761477267
+"Res-S127",0.0279184945719043,0.0501682965348347,0.361338808451344,0.000142418585363725,0.381671000126695,0.178760981729858
+"Res-S136",0.0050209429890359,0.0478323070734306,0.433933700681139,4.55579611621124e-06,0.267892759184744,0.245315734275534
+"Res-S139",0.00183552497328647,0.0145809246309958,0.365154346475157,0.166471702192654,0.069871461691155,0.382086040036752
+"Res-S146",0.0806932834109639,0.0583602585313584,0.177343982762013,0.030374937839242,0.516956066216054,0.136271471240368
+"Res-S149",0.0586524726231127,0.0592307457113109,0.316612856055474,0.0648258467822396,0.488656769118716,0.0120213097091463
+"Res-S150",0.0871161552409637,0.0556725462217808,0.374804878550468,0.0359400792951324,0.145422822872397,0.301043517819258
+"Res-S164",0.0680420510608126,0.0383994944586763,0.0978027998303688,0.0317411811769613,0.267377186495535,0.496637286977646
+"Res-S166",0.223866719850904,0.0170408403735192,0.204296877937781,0.0461453103904052,0.34906096318759,0.1595892882598
+"Res-S174",0.0345976701591581,0.0351901196972956,0.091758578268314,0.0123834437948246,0.440886875253998,0.38518331282641
+"Res-S177",0.192167785072451,0.00640292816658912,0.0503152558425273,0.0442886530897885,0.220316158288524,0.48650921954012
+"Res-S184",0.0384648088483091,0.00308541933213404,0.234124357146187,0.0931120621467101,0.254222891634204,0.376990460892456
+"Res-S19",0.00882999866150076,0.00539658271352068,0.147766841648759,0.0624953559636009,0.522523971796223,0.252987249216395
+"Res-S26",0.042456821053474,0.00108745862651909,0.211985997363408,0.0466613628292803,0.319506568362193,0.378301791765125
+"Res-S40",0.0565500458039017,0.0256342280155221,0.197233635969831,0.0161130497388399,0.32160858520161,0.382860455270295
+"Res-S77",0.0598553354346198,0.0029910405370161,0.334875883439893,5.49268075178032e-06,0.353610237093087,0.248662010814633
+"Res-S87",5.12008251083002e-06,0.0599334383008658,0.311593917943564,0.0510872626145951,0.35979361865251,0.217586642405953
+"Skin-S140",0.0720104960991256,1.98884319711754e-05,0.375757633468821,0.000649634843895701,0.340713516435144,0.210848830721042
+"Skin-S152",0.0273215461752418,0.0606649188544288,0.276664812505454,0.0294177644964872,0.218764441876689,0.387166516091699
+"Skin-S38",0.0406225450723482,0.00668460609772955,0.0999222957285039,0.0580007075144826,0.112953597783813,0.681816247803122
+"Skin-S43",0.0015897902963803,0.00230164750186059,0.153761685553365,0.0110805993636646,0.466672229105092,0.364594048179638
+"Skin-S52",0.0867784904838783,0.00946533597444468,0.0418287176717313,1.162786247915e-05,0.377742720653535,0.484173107353931
+"Skin-S74",0.00361680017663763,0.00343166106679081,0.0157891570801914,0.173441173613929,0.0676732879914436,0.736047920071007
+"Uri-S134",0.00260119426725491,0.00692852219458951,0.468486491557124,0.00759898513713366,0.198950308930897,0.315434497913001
+"Uri-S147",0.113882498138929,0.0230361679132756,0.117165735912325,0.0103829270742983,0.292633722266021,0.442898948695152
+"Uri-S157",0.16189609088518,0.0205329499824615,0.219436728959841,0.0147117192019454,0.286149536158044,0.297272974812527
+"Uri-S20",0.00764024795233281,3.22287672658666e-05,0.361303798289979,0.00294195278636826,0.326046715026191,0.302035057177864
+"Uri-S93",0.0706284371041752,0.0153774705427533,0.240636333878965,5.76710659641613e-06,0.430810450336541,0.242541541030969