Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/6b4961447bfcee20/metrics.csv

@@ -0,0 +1,25 @@
+dataset,design,unit,label,set,real_side,mode,n_real,n_gen,precision_k3,coverage_k3,density_k3,expected_coverage_identical_k3,precision_k5,coverage_k5,density_k5,expected_coverage_identical_k5,precision_k10,coverage_k10,density_k10,expected_coverage_identical_k10,c2st_knn_auc,c2st_knn_auc_sd,c2st_rf_auc,c2st_rf_auc_sd,nn1_acc,nn1_acc_real,nn1_acc_gen,mmd2_bw0.5,mmd2_bw1,mmd2_bw2,mmd2_sum,mmd_bandwidth_m,seconds
+immicro,scored,strict,Real vs real control (held-out real cells),real_R2,R1,raw,3300,3300,0.9609090909090909,0.9806060606060606,2.978888888888889,0.8751136449698409,0.9842424242424243,0.9984848484848485,2.826787878787879,0.9688210011889224,0.9957575757575757,1.0,2.608393939393939,0.9990315545695564,0.5470245638200183,0.0028556488442055476,0.7742047750229568,0.019309566484839415,0.5266666666666666,0.23636363636363636,0.816969696969697,0.00265009290124979,0.0005352554544217902,3.47425706657134e-05,0.0032200909263372934,22.656623051144667,8.9
+immicro,scored,strict,Real vs real control (held-out real cells),real_R2,R1,dm,3300,3300,0.9554545454545454,0.9824242424242424,2.9256565656565656,0.8751136449698409,0.98,0.9978787878787879,2.7657575757575756,0.9688210011889224,0.9936363636363637,1.0,2.558878787878788,0.9990315545695564,0.5495518824609734,0.01065905493065504,0.7738328741965106,0.019088627459745117,0.5207575757575758,0.23030303030303031,0.8112121212121212,0.002447772514928448,0.00046643936055912327,2.3439405198111274e-05,0.0029376512806856825,22.656623051144667,8.7
+immicro,scored,strict,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,raw,3300,3300,,,,,,,,,,,,,0.4971714876033059,0.007140800273392424,0.49507208448117535,0.010626971940859249,0.4903030303030303,0.506969696969697,0.47363636363636363,0.00010723343169327659,8.379473713282515e-05,3.157800750952511e-05,0.00022260617633562685,22.656623051144667,6.7
+immicro,scored,strict,Real vs real control (out-of-sample: R2 vs R3),real_R3,R2,dm,3300,3300,,,,,,,,,,,,,0.4938365472910927,0.008111178468420263,0.4912036271808999,0.010698290495980043,0.48893939393939395,0.5066666666666667,0.4712121212121212,7.090634452588951e-05,7.026008946309226e-05,2.7779844083974936e-05,0.0001689462780729567,22.656623051144667,6.7
+immicro,scored,strict,,lora,R1,raw,3300,3300,0.936969696969697,0.723939393939394,2.8035353535353535,0.8751136449698409,0.973030303030303,0.816969696969697,2.780060606060606,0.9688210011889224,0.9945454545454545,0.9075757575757576,2.708909090909091,0.9990315545695564,0.9003861340679522,0.007078326360374433,0.9726549586776858,0.004755133454521707,0.7681818181818182,0.5445454545454546,0.9918181818181818,0.04413377088978154,0.02290183463442541,0.0071107955289198,0.07414640105312675,22.656623051144667,7.1
+immicro,scored,strict,,lora,R1,dm,3300,3300,0.9557575757575758,0.9054545454545454,4.219595959595959,0.8751136449698409,0.9827272727272728,0.9603030303030303,4.093636363636364,0.9688210011889224,0.9975757575757576,0.9915151515151515,3.8813636363636363,0.9990315545695564,0.8269593663911845,0.004387779293053284,0.9526997245179063,0.007782668501858233,0.666060606060606,0.3484848484848485,0.9836363636363636,0.024511680078639575,0.009771723532611576,0.0026654857967041146,0.036948889407955265,22.656623051144667,7.4
+immicro,scored,strict,,lora,R2,raw,3300,3300,,,,,,,,,,,,,0.9393634067952249,0.005457635600486711,0.9576967401285582,0.006320927942960359,0.8336363636363636,0.72,0.9472727272727273,0.035716337205700666,0.020016982708459308,0.0065978936514559106,0.062331213565615884,22.656623051144667,5.8
+immicro,scored,strict,,lora,R2,dm,3300,3300,,,,,,,,,,,,,0.8610945821854914,0.006958545199283687,0.9298668503213957,0.009236232060618545,0.7177272727272728,0.4809090909090909,0.9545454545454546,0.017389405957144,0.00809881010541691,0.0024639176801732887,0.027952133742734198,22.656623051144667,6.2
+immicro,scored,strict,,pairedcal,R1,raw,3300,3300,0.9148484848484848,0.5203030303030303,2.3969696969696965,0.8751136449698409,0.9590909090909091,0.6003030303030303,2.32169696969697,0.9688210011889224,0.9887878787878788,0.7245454545454545,2.2266969696969694,0.9990315545695564,0.9300477502295685,0.0033387680694642913,0.988242883379247,0.003471772106152675,0.8343939393939394,0.6736363636363636,0.9951515151515151,0.07294251655179457,0.0450204692570193,0.015445202695695048,0.13340818850450892,22.656623051144667,6.7
+immicro,scored,strict,,pairedcal,R1,dm,3300,3300,0.9324242424242424,0.7033333333333334,3.345353535353535,0.8751136449698409,0.9690909090909091,0.8003030303030303,3.2243030303030302,0.9688210011889224,0.9866666666666667,0.9051515151515152,3.056909090909091,0.9990315545695564,0.8933794765840221,0.013489534970677168,0.9811377410468319,0.0037409923414624202,0.7712121212121212,0.5518181818181818,0.9906060606060606,0.05132448575160653,0.027837895012580605,0.009063840403725987,0.08822622116791312,22.656623051144667,6.7
+immicro,scored,strict,,pairedcal,R2,raw,3300,3300,,,,,,,,,,,,,0.9688640955004593,0.006896127352387694,0.9851515151515151,0.0030368335843183997,0.8951515151515151,0.8163636363636364,0.973939393939394,0.06411865721820997,0.041490064483903355,0.014693918726042421,0.12030264042815575,22.656623051144667,5.5
+immicro,scored,strict,,pairedcal,R2,dm,3300,3300,,,,,,,,,,,,,0.9340420110192836,0.0065249115094435034,0.9755133149678604,0.005117373175903598,0.8156060606060606,0.6618181818181819,0.9693939393939394,0.0439444527495112,0.025627629178971212,0.008646074585054286,0.0782181565135367,22.656623051144667,5.6
+immicro,scored,strict,,scsemi,R1,raw,3300,3300,0.3975757575757576,0.04787878787878788,0.25393939393939396,0.8751136449698409,0.5315151515151515,0.06212121212121212,0.25357575757575757,0.9688210011889224,0.7363636363636363,0.08666666666666667,0.23706060606060606,0.9990315545695564,0.9946499081726354,0.0010726554849983102,0.9998556014692378,0.00013177306802340612,0.9862121212121212,0.973939393939394,0.9984848484848485,0.23409372526383,0.1679350641628321,0.06008154464803961,0.4621103340747017,22.656623051144667,5.2
+immicro,scored,strict,,scsemi,R1,dm,3300,3300,0.5687878787878788,0.1603030303030303,0.45646464646464646,0.8751136449698409,0.676969696969697,0.21727272727272728,0.4573333333333333,0.9688210011889224,0.8145454545454546,0.31363636363636366,0.4868181818181818,0.9990315545695564,0.9886099632690541,0.0026522248800694525,0.9996625344352618,0.00018496291431550395,0.965,0.9312121212121212,0.9987878787878788,0.14333694005428765,0.08829888372331007,0.029132095047945894,0.2607679188255436,22.656623051144667,5.4
+immicro,scored,strict,,scsemi,R2,raw,3300,3300,,,,,,,,,,,,,0.9978519283746557,0.0020250773357953873,0.9998636363636363,7.682571284614314e-05,0.9957575757575757,0.993030303030303,0.9984848484848485,0.24493785379082056,0.1675984185893462,0.05921406473154378,0.47175033711171055,22.656623051144667,4.7
+immicro,scored,strict,,scsemi,R2,dm,3300,3300,,,,,,,,,,,,,0.9898813131313131,0.001937553754092962,0.9996905417814508,9.50930165993598e-05,0.9659090909090909,0.933030303030303,0.9987878787878788,0.14167352562253366,0.08545146120612612,0.02797817831088989,0.25510316513954967,22.656623051144667,5.1
+immicro,scored,strict,,raw,R1,raw,3300,3300,0.7175757575757575,0.2012121212121212,0.5862626262626263,0.8751136449698409,0.8157575757575758,0.2684848484848485,0.536969696969697,0.9688210011889224,0.9103030303030303,0.403030303030303,0.5003030303030302,0.9990315545695564,0.9875006887052342,0.0037554347496772393,0.9975291551882461,0.0006637508227001443,0.9496969696969697,0.9009090909090909,0.9984848484848485,0.09918772379326068,0.09526092650826357,0.0375202090655713,0.23196885936709555,22.656623051144667,5.5
+immicro,scored,strict,,raw,R1,dm,3300,3300,0.6427272727272727,0.20333333333333334,0.5167676767676768,0.8751136449698409,0.7496969696969698,0.27424242424242423,0.48903030303030304,0.9688210011889224,0.8803030303030303,0.40424242424242424,0.4825454545454545,0.9990315545695564,0.9873578971533516,0.003050507305070546,0.9969058769513314,0.0008571347143847058,0.9471212121212121,0.8984848484848484,0.9957575757575757,0.09487829898037503,0.09150395833332547,0.035970834817875996,0.2223530921315765,22.656623051144667,5.5
+immicro,scored,strict,,raw,R2,raw,3300,3300,,,,,,,,,,,,,0.9952187786960515,0.0019884144185567175,0.9973849862258953,0.0006229956515084714,0.9760606060606061,0.9669696969696969,0.9851515151515151,0.11896886602545687,0.10344327422630961,0.03937471266243442,0.2617868529142009,22.656623051144667,5.0
+immicro,scored,strict,,raw,R2,dm,3300,3300,,,,,,,,,,,,,0.9955755280073462,0.0016464262112321605,0.9974375573921028,0.000579488946315565,0.9721212121212122,0.9596969696969697,0.9845454545454545,0.10982894720926323,0.09794286404509833,0.03743730240427845,0.24520911365864,22.656623051144667,5.0
+immicro,scored,strict,,refcal,R1,raw,3300,3300,0.6606060606060606,0.08757575757575757,0.5304040404040404,0.8751136449698409,0.7836363636363637,0.11454545454545455,0.4913333333333333,0.9688210011889224,0.8821212121212121,0.16303030303030303,0.42948484848484847,0.9990315545695564,0.99225,0.0023676505860577373,0.9996076675849401,7.040493028661578e-05,0.9757575757575757,0.9521212121212121,0.9993939393939394,0.2151892956118639,0.15162436303939986,0.05343686780848467,0.4202505264597484,22.656623051144667,5.4
+immicro,scored,strict,,refcal,R1,dm,3300,3300,0.6372727272727273,0.15424242424242424,0.5927272727272728,0.8751136449698409,0.7766666666666666,0.20909090909090908,0.6412727272727273,0.9688210011889224,0.9024242424242425,0.28,0.6577878787878788,0.9990315545695564,0.9868797061524335,0.0028475813022329093,0.9993709825528008,0.00024231840263038394,0.9593939393939394,0.92,0.9987878787878788,0.16853073390000867,0.10800749430785417,0.036578168938329325,0.31311639714619216,22.656623051144667,5.7
+immicro,scored,strict,,refcal,R2,raw,3300,3300,,,,,,,,,,,,,0.9973852157943067,0.0011574969862149457,0.9996085858585859,0.0001634516610144409,0.9903030303030304,0.9815151515151516,0.9990909090909091,0.2273167113694834,0.1530489535099122,0.05326122751065454,0.43362689239005014,22.656623051144667,4.8
+immicro,scored,strict,,refcal,R2,dm,3300,3300,,,,,,,,,,,,,0.9931650596877869,0.002907454089789777,0.9994729109274564,0.0002694036903777638,0.9781818181818182,0.9587878787878787,0.9975757575757576,0.17405448171092547,0.10890497992050685,0.036603358896246,0.3195628205276783,22.656623051144667,5.3

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/8afefdaa2c4bf1b4/support.json

@@ -0,0 +1,81 @@
+{
+  "schema": "pbisc.paper.strict-support.v1",
+  "cohort": "immicro",
+  "design": "healthy_outerfold",
+  "unit": "fold2_n10",
+  "n_pairs": 10,
+  "train_sample_ids": [
+    "HS34",
+    "HS110",
+    "HS101",
+    "HS44",
+    "HS98",
+    "HS16",
+    "HS28",
+    "HS23",
+    "HS36",
+    "HS35"
+  ],
+  "train_donor_ids": [
+    "HS34",
+    "HS110",
+    "HS101",
+    "HS44",
+    "HS98",
+    "HS16",
+    "HS28",
+    "HS23",
+    "HS36",
+    "HS35"
+  ],
+  "test_sample_ids": [
+    "HS9",
+    "HS14",
+    "HS19",
+    "HS24",
+    "HS25",
+    "HS26",
+    "HS32",
+    "HS42",
+    "HS43",
+    "HS50",
+    "HS55",
+    "HS59",
+    "HS67",
+    "HS71",
+    "HS73",
+    "HS80",
+    "HS91",
+    "HS102",
+    "HS105",
+    "HS108",
+    "HS111"
+  ],
+  "test_donor_ids": [
+    "HS9",
+    "HS14",
+    "HS19",
+    "HS24",
+    "HS25",
+    "HS26",
+    "HS32",
+    "HS42",
+    "HS43",
+    "HS50",
+    "HS55",
+    "HS59",
+    "HS67",
+    "HS71",
+    "HS73",
+    "HS80",
+    "HS91",
+    "HS102",
+    "HS105",
+    "HS108",
+    "HS111"
+  ],
+  "excluded_sample_ids": [],
+  "seed": 20261014,
+  "selection_audit": [],
+  "sha256": "6b42beb22dbd81bfe90a640c7061888be83ef668d4ba6fbbe7943e5a1b3d7a33"
+}

paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/8eb1a2330a185d81/support.json

@@ -0,0 +1,444 @@
+{
+  "schema": "pbisc.paper.strict-support.v1",
+  "cohort": "imperial_eskd",
+  "design": "disease_existing_draw",
+  "unit": "draw2_n5",
+  "n_pairs": 5,
+  "train_sample_ids": [
+    "C164_1105",
+    "C85_2004",
+    "C101_0601",
+    "C60_2504",
+    "C187_1201"
+  ],
+  "train_donor_ids": [
+    "C164",
+    "C85",
+    "C101",
+    "C60",
+    "C187"
+  ],
+  "test_sample_ids": [
+    "C20_1004",
+    "C20_1404",
+    "C21_1004",
+    "C21_1704",
+    "C21_2504",
+    "C23_2204",
+    "C31_1304",
+    "C31_2004",
+    "C31_2704",
+    "C33_1401",
+    "C33_1601",
+    "C33_1901",
+    "C34_1404",
+    "C34_2104",
+    "C34_2504",
+    "C36_1504",
+    "C36_1704",
+    "C36_2104",
+    "C40_1504",
+    "C40_2204",
+    "C40_0105",
+    "C42_1504",
+    "C42_2204",
+    "C42_2704",
+    "C58_1604",
+    "C58_2501",
+    "C58_2901",
+    "C58_0102",
+    "C58_0402",
+    "C58_1003",
+    "C63_1704",
+    "C63_2404",
+    "C63_2904",
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+    "C65_2104",
+    "C65_2504",
+    "C69_1804",
+    "C82_2504",
+    "C93_2104",
+    "C93_2704",
+    "C93_0405",
+    "C103_2204",
+    "C104_2204",
+    "C106_2204",
+    "C108_2204",
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+    "C108_1801",
+    "C108_2201",
+    "C113_0605",
+    "C123_2404",
+    "C123_2904",
+    "C123_0505",
+    "C124_2404",
+    "C124_2704",
+    "C124_0105",
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+    "C126_0605",
+    "C127_2504",
+    "C127_0405",
+    "C127_1105",
+    "C128_2504",
+    "C128_0405",
+    "C128_1105",
+    "C132_2804",
+    "C132_0205",
+    "C132_1105",
+    "C137_3004",
+    "C137_2502",
+    "C138_3004",
+    "C138_2301",
+    "C138_3001",
+    "C138_0202",
+    "C138_0402",
+    "C140_3004",
+    "C140_2801",
+    "C140_3001",
+    "C140_0202",
+    "C140_0402",
+    "C140_0602",
+    "C140_0902",
+    "C140_1103",
+    "C141_2001",
+    "C141_2201",
+    "C141_3001",
+    "C141_0202",
+    "C142_3004",
+    "C145_3004",
+    "C145_0701",
+    "C145_1201",
+    "C145_1401",
+    "C145_1901",
+    "C145_2301",
+    "C146_3004",
+    "C146_1201",
+    "C146_1401",
+    "C146_1601",
+    "C146_1901",
+    "C146_2301",
+    "C146_2701",
+    "C146_2502",
+    "C147_3004",
+    "C147_1401",
+    "C147_1901",
+    "C152_0405",
+    "C161_1105",
+    "C167_1205",
+    "C168_1205",
+    "C168_2001",
+    "C168_2301",
+    "C168_3001",
+    "C168_0202",
+    "C168_0403",
+    "C169_1205",
+    "C169_2001",
+    "C169_2301",
+    "C169_0202",
+    "C169_0403",
+    "C170_1205",
+    "C170_2301",
+    "C170_0202",
+    "C170_0402",
+    "C170_0403",
+    "C190_2605",
+    "C190_2901",
+    "C190_0102",
+    "C190_0302",
+    "C190_0502",
+    "C190_0802",
+    "C190_1002",
+    "C190_0903",
+    "C193_2605",
+    "C195_2605",
+    "C197_2605",
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/c5b9b56eea929032/summary.json

@@ -0,0 +1,214 @@
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