Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261005T142225Z-rare-states-scratch-vs-pretrained/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/scratch_vs_lora_20261005/verify_confound_within_donormean.csv

@@ -0,0 +1,113 @@
+comparison,state,n_donors,ratio_donor_mean_scratch,ratio_donor_mean_pretrained,ratio_pooled_scratch,ratio_pooled_pretrained,D_donor_mean,D_ci_lo,D_ci_hi,verdict,D_pooled_pc,verdict_pooled
+5 pairs: scratch vs LoRA,C1Q-high monocyte (reference),17,0.809198,0.783898,1.00515,1.07489,-0.0458268,-0.484416,0.324327,not significant,-0.0963844,not significant
+5 pairs: scratch vs LoRA,Cycling T/NK,17,0.3994,1.12872,0.50825,1.15404,1.14941,-0.272407,2.09207,not significant,0.740746,not significant
+5 pairs: scratch vs LoRA,Cycling activated T (CD38/HLA-DR),17,0.354151,0.467047,0.403693,0.443262,0.399203,-0.236795,0.881148,not significant,0.134898,not significant
+5 pairs: scratch vs LoRA,Proliferating T (label),17,1.06157,2.08952,1.36629,2.48923,-0.976978,-1.26321,-0.0996879,scratch closer,-0.863321,scratch closer
+5 pairs: scratch vs LoRA,Plasmablast (label),17,0.957271,1.59545,1.12466,1.87444,-0.610964,-1.02146,0.24977,not significant,-0.735121,not significant
+5 pairs: scratch vs LoRA,Plasmablast (markers),17,0.33325,0.478957,0.349986,0.503011,0.52329,-0.0821797,0.994053,not significant,0.522342,not significant
+5 pairs: scratch vs LoRA,MS1 monocyte (IL1R2+),17,0.0910031,0.116342,0.0956144,0.151909,0.354379,-0.738067,0.926072,not significant,0.665476,not significant
+5 pairs: scratch vs LoRA,Cycling monocyte (Ye 2026),17,0.0494144,0.0962131,0.0613772,0.111874,0.961302,-0.559883,2.45635,not significant,0.845344,not significant
+5 pairs: scratch vs LoRA,ISG-high monocyte (positive control),17,0.26361,0.287782,0.324734,0.324813,0.126568,-1.43148,1.23931,not significant,-0.000246081,not significant
+5 pairs: scratch vs LoRA,ISG-high T,17,0.0791435,0.237716,0.145625,0.456853,1.58669,-0.078373,3.04303,not significant,1.63293,not significant
+5 pairs: scratch vs LoRA,DN2 / ABC B,17,1.26645,1.05875,1.63464,1.10691,0.258423,-0.416904,0.522691,not significant,0.562138,not significant
+5 pairs: scratch vs LoRA,HSPC,17,0.470615,0.941229,0.479321,0.958643,1,-0.615677,2.1612,not significant,0.973033,not significant
+5 pairs: scratch vs LoRA,Cytotoxic CD4 T,17,1.33435,1.62185,1.51594,1.79338,-0.281511,-0.715919,0.586523,not significant,-0.242407,not significant
+5 pairs: scratch vs LoRA,Granulocyte-like (LDG),17,0.0983292,0.0416649,0.128721,0.0545427,-1.23879,-2.09689,-0.328623,scratch closer,-1.23053,scratch closer
+5 pairs: scratch vs LoRA,Platelet signal in monocytes (negative control),17,0.693274,0.766921,0.59832,0.835598,0.145652,-0.360746,0.497479,not significant,0.481466,not significant
+5 pairs: scratch vs LoRA,AGGREGATE,null,null,null,null,null,0.236818,-0.0890696,0.476602,not significant,0.22378,not significant
+58 pairs: scratch vs LoRA,C1Q-high monocyte (reference),17,0.460759,0.753123,0.466973,1.05336,0.708872,-0.0900804,1.1537,not significant,1.01444,not significant
+58 pairs: scratch vs LoRA,Cycling T/NK,17,0.345931,0.867465,0.415901,0.931543,1.32632,0.313287,2.05799,pretrained closer,1.14745,pretrained closer
+58 pairs: scratch vs LoRA,Cycling activated T (CD38/HLA-DR),17,0.288226,0.424295,0.314981,0.408872,0.557869,-0.216205,1.10968,not significant,0.372211,not significant
+58 pairs: scratch vs LoRA,Proliferating T (label),17,0.893481,1.2455,1.12718,1.48979,-0.154235,-0.732824,0.731605,not significant,-0.400551,not significant
+58 pairs: scratch vs LoRA,Plasmablast (label),17,1.05545,2.95772,1.24001,3.47492,-1.48662,-2.25183,0.311997,not significant,-1.48393,not significant
+58 pairs: scratch vs LoRA,Plasmablast (markers),17,0.60902,0.990026,0.642013,1.0399,0.700977,-0.887846,0.936423,not significant,0.580247,not significant
+58 pairs: scratch vs LoRA,MS1 monocyte (IL1R2+),17,0.356483,0.215202,0.404617,0.205964,-0.728141,-1.09914,-0.163032,scratch closer,-0.972054,not significant
+58 pairs: scratch vs LoRA,Cycling monocyte (Ye 2026),17,0.0728091,0.0714572,0.0867531,0.0895574,-0.0270404,-1.35868,1.22334,not significant,0.0484442,not significant
+58 pairs: scratch vs LoRA,ISG-high monocyte (positive control),17,0.258445,0.351976,0.306379,0.435961,0.44562,-0.682685,1.18964,not significant,0.507772,not significant
+58 pairs: scratch vs LoRA,ISG-high T,17,0.088518,0.189243,0.169555,0.373078,1.0962,-0.219845,2.17431,not significant,1.12443,not significant
+58 pairs: scratch vs LoRA,DN2 / ABC B,17,0.673406,0.444947,0.633688,0.350657,-0.597843,-1.45031,0.227846,not significant,-0.849022,not significant
+58 pairs: scratch vs LoRA,HSPC,17,1.31855,0.567666,1.33828,0.573547,-0.41793,-2.29463,1.05879,not significant,-0.324538,not significant
+58 pairs: scratch vs LoRA,Cytotoxic CD4 T,17,0.699857,0.841974,0.800203,0.895231,0.266714,-0.213073,0.576552,not significant,0.161312,not significant
+58 pairs: scratch vs LoRA,Granulocyte-like (LDG),17,0.0323779,0.0287267,0.0430958,0.0382542,-0.17262,-1.03903,0.514925,not significant,-0.169463,not significant
+58 pairs: scratch vs LoRA,Platelet signal in monocytes (negative control),17,0.427032,0.501797,0.392348,0.547251,0.232759,-0.233507,0.703341,not significant,0.479526,not significant
+58 pairs: scratch vs LoRA,AGGREGATE,null,null,null,null,null,0.0825015,-0.304135,0.36677,not significant,0.0191519,not significant
+58 pairs: scratch vs full FT,C1Q-high monocyte (reference),17,0.460759,0.852324,0.466973,0.916807,0.88739,0.14412,1.26637,pretrained closer,0.969945,not significant
+58 pairs: scratch vs full FT,Cycling T/NK,17,0.345931,1.13853,0.415901,1.336,1.34427,0.165116,2.24926,pretrained closer,0.814966,not significant
+58 pairs: scratch vs full FT,Cycling activated T (CD38/HLA-DR),17,0.288226,0.525844,0.314981,0.578323,0.867435,0.246438,1.3664,pretrained closer,0.869821,pretrained closer
+58 pairs: scratch vs full FT,Proliferating T (label),17,0.893481,1.44288,1.12718,1.84558,-0.366462,-0.86931,0.785096,not significant,-0.708811,scratch closer
+58 pairs: scratch vs full FT,Plasmablast (label),17,1.05545,2.79204,1.24001,3.28027,-1.40346,-1.98696,0.108641,not significant,-1.40085,scratch closer
+58 pairs: scratch vs full FT,Plasmablast (markers),17,0.60902,1.09172,0.642013,1.15447,0.58883,-0.642233,1.06215,not significant,0.429526,not significant
+58 pairs: scratch vs full FT,MS1 monocyte (IL1R2+),17,0.356483,0.366443,0.404617,0.361097,0.0397586,-0.518991,0.668334,not significant,-0.163893,not significant
+58 pairs: scratch vs full FT,Cycling monocyte (Ye 2026),17,0.0728091,0.128259,0.0867531,0.113928,0.81687,-0.190507,1.907,not significant,0.385221,not significant
+58 pairs: scratch vs full FT,ISG-high monocyte (positive control),17,0.258445,0.424805,0.306379,0.576362,0.716943,-0.379272,1.44159,not significant,0.909549,not significant
+58 pairs: scratch vs full FT,ISG-high T,17,0.088518,0.236791,0.169555,0.449465,1.41957,-0.118094,2.65658,not significant,1.39275,not significant
+58 pairs: scratch vs full FT,DN2 / ABC B,17,0.673406,0.421002,0.633688,0.372326,-0.677651,-1.13134,0.0016554,not significant,-0.763931,not significant
+58 pairs: scratch vs full FT,HSPC,17,1.31855,0.765868,1.33828,0.782109,0.0141233,-1.10374,1.03639,not significant,0.111118,not significant
+58 pairs: scratch vs full FT,Cytotoxic CD4 T,17,0.699857,1.28262,0.800203,1.32217,0.155772,-0.641691,1.09378,not significant,-0.093794,not significant
+58 pairs: scratch vs full FT,Granulocyte-like (LDG),17,0.0323779,0.0308685,0.0430958,0.0413254,-0.0688773,-0.64808,0.506748,not significant,-0.0587304,not significant
+58 pairs: scratch vs full FT,Platelet signal in monocytes (negative control),17,0.427032,0.733131,0.392348,0.699329,0.779727,0.363253,1.26794,pretrained closer,0.83285,pretrained closer
+58 pairs: scratch vs full FT,AGGREGATE,null,null,null,null,null,0.278275,-0.0218225,0.600504,not significant,0.13718,not significant
+58 pairs + recipes: scratch vs LoRA,C1Q-high monocyte (reference),16,0.579832,0.501261,0.5325,0.625773,-0.210074,-1.09543,0.551329,not significant,0.231478,not significant
+58 pairs + recipes: scratch vs LoRA,Cycling T/NK,17,0.388756,0.853965,0.479032,0.987329,1.13531,0.209818,1.75519,pretrained closer,1.03136,not significant
+58 pairs + recipes: scratch vs LoRA,Cycling activated T (CD38/HLA-DR),17,0.257854,0.43589,0.278936,0.45704,0.757409,0.00219926,1.51326,pretrained closer,0.705079,not significant
+58 pairs + recipes: scratch vs LoRA,Proliferating T (label),17,0.784805,1.38471,0.977178,1.76032,-0.119986,-0.889944,0.931494,not significant,-0.790693,scratch closer
+58 pairs + recipes: scratch vs LoRA,Plasmablast (label),17,1.00023,1.9575,1.17513,2.29979,-0.968684,-1.50091,0.391807,not significant,-0.966525,not significant
+58 pairs + recipes: scratch vs LoRA,Plasmablast (markers),17,0.694428,0.673899,0.734132,0.710737,-0.043292,-0.88493,0.362547,not significant,-0.0467015,not significant
+58 pairs + recipes: scratch vs LoRA,MS1 monocyte (IL1R2+),16,0.375698,0.275034,0.4621,0.301019,-0.449964,-1.22189,0.333337,not significant,-0.617507,not significant
+58 pairs + recipes: scratch vs LoRA,Cycling monocyte (Ye 2026),16,0.0798923,0.103545,0.0869464,0.0962428,0.374135,-0.480603,1.18586,not significant,0.141031,not significant
+58 pairs + recipes: scratch vs LoRA,ISG-high monocyte (positive control),16,0.201126,0.464854,0.263355,0.597133,1.20868,-0.128803,2.1393,not significant,1.17732,not significant
+58 pairs + recipes: scratch vs LoRA,ISG-high T,17,0.10207,0.280481,0.183512,0.532931,1.45835,0.0660064,2.43432,pretrained closer,1.52359,pretrained closer
+58 pairs + recipes: scratch vs LoRA,DN2 / ABC B,17,0.470199,0.302942,0.459289,0.28267,-0.634231,-1.11094,-0.0840102,scratch closer,-0.696454,scratch closer
+58 pairs + recipes: scratch vs LoRA,HSPC,17,0.936374,0.694359,0.955911,0.710699,-0.431403,-1.80658,0.54105,not significant,-0.418616,not significant
+58 pairs + recipes: scratch vs LoRA,Cytotoxic CD4 T,17,1.05642,1.22858,1.18755,1.23372,-0.217803,-0.361637,0.623264,not significant,-0.055263,not significant
+58 pairs + recipes: scratch vs LoRA,Granulocyte-like (LDG),17,0.0438076,0.0189506,0.0585732,0.0252858,-1.20893,-2.21706,-0.368426,scratch closer,-1.19323,scratch closer
+58 pairs + recipes: scratch vs LoRA,Platelet signal in monocytes (negative control),16,0.503717,0.550325,0.445627,0.544771,0.12767,-0.425459,0.595124,not significant,0.289324,not significant
+58 pairs + recipes: scratch vs LoRA,AGGREGATE,null,null,null,null,null,-0.0430128,-0.328086,0.285335,not significant,-0.0886499,not significant
+ref: scratch 5 pairs vs zero-shot,C1Q-high monocyte (reference),17,0.809198,0.0188193,1.00515,0.024986,-5.42621,-6.7222,-4.46925,scratch closer,-5.25527,scratch closer
+ref: scratch 5 pairs vs zero-shot,Cycling T/NK,17,0.3994,2.21737,0.50825,2.51667,0.175246,-1.28334,1.80039,not significant,-0.381514,not significant
+ref: scratch 5 pairs vs zero-shot,Cycling activated T (CD38/HLA-DR),17,0.354151,0.622811,0.403693,0.64599,0.814432,0.125457,1.33663,pretrained closer,0.687241,pretrained closer
+ref: scratch 5 pairs vs zero-shot,Proliferating T (label),17,1.06157,3.40557,1.36629,3.87832,-1.6817,-2.06161,-0.740517,scratch closer,-1.5028,scratch closer
+ref: scratch 5 pairs vs zero-shot,Plasmablast (label),17,0.957271,1.2825,1.12466,1.50676,-0.295955,-1.08473,0.365557,not significant,-0.420788,not significant
+ref: scratch 5 pairs vs zero-shot,Plasmablast (markers),17,0.33325,0.718117,0.349986,0.781626,1.10761,0.0484587,1.59871,pretrained closer,1.15877,pretrained closer
+ref: scratch 5 pairs vs zero-shot,MS1 monocyte (IL1R2+),17,0.0910031,0.0593662,0.0956144,0.0838364,-0.616274,-1.67923,0.0507908,not significant,-0.189793,not significant
+ref: scratch 5 pairs vs zero-shot,Cycling monocyte (Ye 2026),17,0.0494144,0.0768146,0.0613772,0.0934457,0.63645,-1.04434,2.01485,not significant,0.59422,not significant
+ref: scratch 5 pairs vs zero-shot,ISG-high monocyte (positive control),17,0.26361,1.65633,0.324734,2.62664,1.19553,-1.64012,2.75774,not significant,0.22661,not significant
+ref: scratch 5 pairs vs zero-shot,ISG-high T,17,0.0791435,1.7666,0.145625,2.70515,2.83841,-0.365711,4.83021,not significant,1.31443,not significant
+ref: scratch 5 pairs vs zero-shot,DN2 / ABC B,17,1.26645,1.14014,1.63464,1.26791,0.151578,-0.479536,0.484331,not significant,0.366263,not significant
+ref: scratch 5 pairs vs zero-shot,HSPC,17,0.470615,0.839497,0.479321,0.88238,0.83498,-0.624214,2.18045,not significant,0.860574,not significant
+ref: scratch 5 pairs vs zero-shot,Cytotoxic CD4 T,17,1.33435,0.514059,1.51594,0.467215,-0.543862,-1.81293,1.23822,not significant,-0.459472,not significant
+ref: scratch 5 pairs vs zero-shot,Granulocyte-like (LDG),17,0.0983292,0.0963577,0.128721,0.139565,-0.0292199,-0.540069,0.929683,not significant,0.120737,not significant
+ref: scratch 5 pairs vs zero-shot,Platelet signal in monocytes (negative control),17,0.693274,0.306505,0.59832,0.359741,-1.17751,-1.70079,-0.763502,scratch closer,-0.733021,scratch closer
+ref: scratch 5 pairs vs zero-shot,AGGREGATE,null,null,null,null,null,-0.156501,-0.534518,0.122954,not significant,-0.239032,not significant
+ref: scratch 58 pairs vs zero-shot,C1Q-high monocyte (reference),17,0.460759,0.0188193,0.466973,0.024986,-4.61373,-5.82373,-3.74832,scratch closer,-4.17209,scratch closer
+ref: scratch 58 pairs vs zero-shot,Cycling T/NK,17,0.345931,2.21737,0.415901,2.51667,0.382597,-1.00172,1.82708,not significant,-0.0983106,not significant
+ref: scratch 58 pairs vs zero-shot,Cycling activated T (CD38/HLA-DR),17,0.288226,0.622811,0.314981,0.64599,1.1116,0.292588,1.76061,pretrained closer,1.04112,pretrained closer
+ref: scratch 58 pairs vs zero-shot,Proliferating T (label),17,0.893481,3.40557,1.12718,3.87832,-1.60541,-2.14314,-0.48868,scratch closer,-1.77913,scratch closer
+ref: scratch 58 pairs vs zero-shot,Plasmablast (label),17,1.05545,1.2825,1.24001,1.50676,-0.281094,-0.968423,0.383538,not significant,-0.280354,not significant
+ref: scratch 58 pairs vs zero-shot,Plasmablast (markers),17,0.60902,0.718117,0.642013,0.781626,0.237729,-0.569776,0.67029,not significant,0.284679,not significant
+ref: scratch 58 pairs vs zero-shot,MS1 monocyte (IL1R2+),17,0.356483,0.0593662,0.404617,0.0838364,-2.58612,-3.63063,-1.82201,scratch closer,-2.26777,scratch closer
+ref: scratch 58 pairs vs zero-shot,Cycling monocyte (Ye 2026),17,0.0728091,0.0768146,0.0867531,0.0934457,0.0772621,-1.5529,1.15595,not significant,0.0906723,not significant
+ref: scratch 58 pairs vs zero-shot,ISG-high monocyte (positive control),17,0.258445,1.65633,0.306379,2.62664,1.22408,-1.42375,2.41545,not significant,0.308419,not significant
+ref: scratch 58 pairs vs zero-shot,ISG-high T,17,0.088518,1.7666,0.169555,2.70515,2.67691,-0.479296,4.31746,not significant,1.09668,not significant
+ref: scratch 58 pairs vs zero-shot,DN2 / ABC B,17,0.673406,1.14014,0.633688,1.26791,0.381238,-0.754586,1.14679,not significant,0.307145,not significant
+ref: scratch 58 pairs vs zero-shot,HSPC,17,1.31855,0.839497,1.33828,0.88238,0.146554,-0.89485,1.05158,not significant,0.28445,not significant
+ref: scratch 58 pairs vs zero-shot,Cytotoxic CD4 T,17,0.699857,0.514059,0.800203,0.467215,-0.445128,-1.46754,0.383243,not significant,-0.748626,not significant
+ref: scratch 58 pairs vs zero-shot,Granulocyte-like (LDG),17,0.0323779,0.0963577,0.0430958,0.139565,1.57339,0.939755,2.54356,pretrained closer,1.68558,pretrained closer
+ref: scratch 58 pairs vs zero-shot,Platelet signal in monocytes (negative control),17,0.427032,0.306505,0.392348,0.359741,-0.478433,-1.02872,0.107595,not significant,-0.125732,not significant
+ref: scratch 58 pairs vs zero-shot,AGGREGATE,null,null,null,null,null,-0.226477,-0.661928,0.125509,not significant,-0.350458,scratch closer
+ref: scratch 58 + recipes vs zero-shot,C1Q-high monocyte (reference),16,0.579832,0.0189821,0.5325,0.024986,-4.93292,-6.12257,-4.07978,scratch closer,-4.36141,scratch closer
+ref: scratch 58 + recipes vs zero-shot,Cycling T/NK,17,0.388756,2.21737,0.479032,2.51667,0.214216,-1.09038,1.5005,not significant,-0.298235,not significant
+ref: scratch 58 + recipes vs zero-shot,Cycling activated T (CD38/HLA-DR),17,0.257854,0.622811,0.278936,0.64599,1.27224,0.350784,2.11778,pretrained closer,1.21407,pretrained closer
+ref: scratch 58 + recipes vs zero-shot,Proliferating T (label),17,0.784805,3.40557,0.977178,3.87832,-1.4183,-2.25091,-0.350871,scratch closer,-1.92919,scratch closer
+ref: scratch 58 + recipes vs zero-shot,Plasmablast (label),17,1.00023,1.2825,1.17513,1.50676,-0.358631,-1.01715,0.434737,not significant,-0.35766,not significant
+ref: scratch 58 + recipes vs zero-shot,Plasmablast (markers),17,0.694428,0.718117,0.734132,0.781626,0.0483928,-0.822402,0.443367,not significant,0.0914443,not significant
+ref: scratch 58 + recipes vs zero-shot,MS1 monocyte (IL1R2+),16,0.375698,0.0599652,0.4621,0.0838364,-2.64738,-3.85815,-1.64332,scratch closer,-2.45939,scratch closer
+ref: scratch 58 + recipes vs zero-shot,Cycling monocyte (Ye 2026),16,0.0798923,0.0793928,0.0869464,0.0934457,-0.00904752,-1.52483,0.96359,not significant,0.0819822,not significant
+ref: scratch 58 + recipes vs zero-shot,ISG-high monocyte (positive control),16,0.201126,1.61087,0.263355,2.62664,1.62599,-1.12234,2.96388,not significant,0.525138,not significant
+ref: scratch 58 + recipes vs zero-shot,ISG-high T,17,0.10207,1.7666,0.183512,2.70515,2.4714,-0.702434,3.98781,not significant,0.984085,not significant
+ref: scratch 58 + recipes vs zero-shot,DN2 / ABC B,17,0.470199,1.14014,0.459289,1.26791,0.899444,-0.345287,1.57921,not significant,0.768926,not significant
+ref: scratch 58 + recipes vs zero-shot,HSPC,17,0.936374,0.839497,0.955911,0.88238,-0.157558,-0.965528,0.650191,not significant,-0.109241,not significant
+ref: scratch 58 + recipes vs zero-shot,Cytotoxic CD4 T,17,1.05642,0.514059,1.18755,0.467215,-0.880807,-1.79739,0.654315,not significant,-0.80987,not significant
+ref: scratch 58 + recipes vs zero-shot,Granulocyte-like (LDG),17,0.0438076,0.0963577,0.0585732,0.139565,1.13722,0.477424,2.04347,pretrained closer,1.24752,pretrained closer
+ref: scratch 58 + recipes vs zero-shot,Platelet signal in monocytes (negative control),16,0.503717,0.343208,0.445627,0.359741,-0.553528,-0.990079,-0.065887,scratch closer,-0.309443,not significant
+ref: scratch 58 + recipes vs zero-shot,AGGREGATE,null,null,null,null,null,-0.335518,-0.741982,0.0148684,not significant,-0.456689,scratch closer

paper-releases/pbisc-diffusion/updates/20261005T142225Z-rare-states-scratch-vs-pretrained/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/scratch_vs_lora_20261005/verify_confound_within_labelcheck.csv

@@ -0,0 +1,13 @@
+arm,obs_thin_T,gen_PT_cells,gen_PTpass_cells,gen_cycling_T_cells,gen_pass_PT,gen_pass_PT_ci_lo,gen_pass_PT_ci_hi,obs_pass_PT,gen_PT_of_T,gen_PT_of_T_ci_lo,gen_PT_of_T_ci_hi,obs_PT_of_T,gen_cyc_of_T,gen_cyc_of_T_ci_lo,gen_cyc_of_T_ci_hi,obs_cyc_of_T,gen_pass_nonPT,gen_pass_nonPT_ci_lo,gen_pass_nonPT_ci_hi,obs_pass_nonPT,gen_share_cyc_in_PT,gen_share_cyc_in_PT_ci_lo,gen_share_cyc_in_PT_ci_hi,obs_share_cyc_in_PT,gen_over_obs_PT_of_T,gen_over_obs_pass_PT,gen_over_obs_cyc_of_T,diff_pass_PT,diff_pass_PT_ci_lo,diff_pass_PT_ci_hi,diff_PT_of_T,diff_PT_of_T_ci_lo,diff_PT_of_T_ci_hi,diff_cyc_of_T,diff_cyc_of_T_ci_lo,diff_cyc_of_T_ci_hi,diff_share_cyc_in_PT,diff_share_cyc_in_PT_ci_lo,diff_share_cyc_in_PT_ci_hi
+zs__raw,0.461,243,28,32,11.5226,6.30579,20.4312,30.8559,2.81543,1.49929,4.38218,0.725941,0.370757,0.216694,0.572952,0.266505,0.0476872,0,0.109681,0.0428209,87.5,70.5882,100,84.0491,3.87832,0.373434,1.39118,null,null,null,null,null,null,null,null,null,null,null,null
+lora_n5__raw,1,224,51,54,22.7679,14.4795,32.4022,37.3874,1.80703,1.37283,2.3114,0.725941,0.435624,0.25831,0.69409,0.377685,0.0246467,0,0.0647014,0.107052,94.4444,89.7937,100,71.8615,2.48923,0.608972,1.15341,null,null,null,null,null,null,null,null,null,null,null,null
+scratch_n5__raw,1,135,25,28,18.5185,9.73929,28.7502,37.3874,0.991845,0.811963,1.18596,0.725941,0.205716,0.101971,0.336806,0.377685,0.0222618,0,0.0458122,0.107052,89.2857,80,100,71.8615,1.36629,0.495315,0.544675,null,null,null,null,null,null,null,null,null,null,null,null
+real_lora__raw,0.934,153,40,44,26.1438,19.375,31.8859,36.7117,1.0815,0.806498,1.40744,0.725941,0.31102,0.185172,0.470733,0.3597,0.0285837,0,0.069384,0.0938766,90.9091,83.3333,100,74.0909,1.48979,0.712138,0.864664,null,null,null,null,null,null,null,null,null,null,null,null
+real_full__raw,0.882,180,50,61,27.7778,21.875,33.3333,35.8108,1.33978,1.06095,1.6258,0.725941,0.454038,0.321537,0.620201,0.354795,0.0829876,0.0279621,0.152038,0.0955236,81.9672,73.6105,92.8571,73.2719,1.84558,0.775681,1.27972,null,null,null,null,null,null,null,null,null,null,null,null
+scratch_full__raw,0.953,110,18,21,16.3636,10.2932,22.6419,37.1622,0.81827,0.54295,1.11316,0.725941,0.156215,0.0855769,0.232377,0.36624,0.0225006,0,0.0469268,0.0971705,85.7143,73.3333,100,73.6607,1.12718,0.440331,0.426537,null,null,null,null,null,null,null,null,null,null,null,null
+lora_recipe__raw,0.923,177,43,47,24.2938,17.4694,32.8159,36.4865,1.27789,1.04394,1.54019,0.725941,0.339326,0.223918,0.496095,0.361335,0.0292526,0.00731945,0.0551614,0.0971705,91.4894,83.3333,97.8261,73.3032,1.76032,0.66583,0.939088,null,null,null,null,null,null,null,null,null,null,null,null
+scratch_recipe__raw,0.927,98,23,23,23.4694,17.7561,28.5714,36.9369,0.709374,0.455947,0.983507,0.725941,0.166486,0.0901508,0.246624,0.371145,0,0,0,0.103758,100,100,100,72.2467,0.977178,0.635391,0.448573,null,null,null,null,null,null,null,null,null,null,null,null
+DIFF pretrained - scratch | 5 pairs: scratch vs LoRA,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,4.24934,-6.08328,14.7039,0.81519,0.394108,1.31029,0.229908,0.0461339,0.470011,5.15873,-5.88235,16.673
+DIFF pretrained - scratch | 58 pairs: scratch vs LoRA,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,9.78015,1.62251,17.1305,0.263232,-0.0874552,0.616225,0.154805,0.0237916,0.305047,5.19481,-6.50205,19.1232
+DIFF pretrained - scratch | 58 pairs: scratch vs full FT,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,11.4141,3.66043,18.3974,0.521514,0.233227,0.800779,0.297823,0.132053,0.486351,-3.74707,-21.4308,13.7502
+DIFF pretrained - scratch | 58 pairs + recipes: scratch vs LoRA,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,0.824398,-8.02484,10.5278,0.568512,0.315982,0.803663,0.17284,0.0483197,0.318678,-8.51064,-16.6667,-2.17391

paper-releases/pbisc-diffusion/updates/20261005T142225Z-rare-states-scratch-vs-pretrained/diffusion/dataset/server_1/model8/plans/rare_states_screen_20261004/out/scratch_vs_lora_20261005/verify_confound_within_lodo.csv

@@ -0,0 +1,113 @@
+comparison,state,D_full,verdict_full,verdict_bc_full,D_lodo_min,D_lodo_max,n_lodo_sign_flip,n_lodo_same_verdict,n_lodo_same_verdict_bc,lodo_verdicts,lodo_verdicts_bc,most_influential_donor,D_without_it,ratio_scratch_without_it,ratio_pretrained_without_it
+5 pairs: scratch vs LoRA,C1Q-high monocyte (reference),-0.0963844,not significant,not significant,-0.136976,0.171795,4,17,17,not significant:17,not significant:17,PIC04,0.171795,0.880647,0.992013
+5 pairs: scratch vs LoRA,Cycling T/NK,0.740746,not significant,not significant,0.418656,1.01224,0,17,16,not significant:17,not significant:16; pretrained closer:1,Abd-PS19,0.418656,0.571097,1.30997
+5 pairs: scratch vs LoRA,Cycling activated T (CD38/HLA-DR),0.134898,not significant,not significant,0.0105149,0.255609,0,17,17,not significant:17,not significant:17,Abd-S39,0.0105149,0.373434,0.376165
+5 pairs: scratch vs LoRA,Proliferating T (label),-0.863321,scratch closer,scratch closer,-0.932009,-0.731271,0,17,17,scratch closer:17,scratch closer:17,Res-S139,-0.731271,1.48036,2.45755
+5 pairs: scratch vs LoRA,Plasmablast (label),-0.735121,not significant,scratch closer,-0.819264,-0.569021,0,14,17,not significant:14; scratch closer:3,scratch closer:17,Abd-PS23,-0.569021,1.16514,1.7285
+5 pairs: scratch vs LoRA,Plasmablast (markers),0.522342,not significant,not significant,0.297622,0.583862,0,15,10,not significant:15; pretrained closer:2,not significant:10; pretrained closer:7,Abd-PS23,0.297622,0.345315,0.424433
+5 pairs: scratch vs LoRA,MS1 monocyte (IL1R2+),0.665476,not significant,not significant,0.356163,0.773031,0,17,17,not significant:17,not significant:17,Skin-S140,0.356163,0.122418,0.156696
+5 pairs: scratch vs LoRA,Cycling monocyte (Ye 2026),0.845344,not significant,not significant,0.457605,1.08615,0,17,17,not significant:17,not significant:17,Abd-PS23,0.457605,0.084079,0.115462
+5 pairs: scratch vs LoRA,ISG-high monocyte (positive control),-0.000246081,not significant,not significant,-0.725843,0.211826,10,17,17,not significant:17,not significant:17,Res-S139,-0.725843,0.369495,0.223413
+5 pairs: scratch vs LoRA,ISG-high T,1.63293,not significant,not significant,0.739488,1.97422,0,14,11,not significant:14; pretrained closer:3,not significant:11; pretrained closer:6,Res-S139,0.739488,0.207997,0.347269
+5 pairs: scratch vs LoRA,DN2 / ABC B,0.562138,not significant,pretrained closer,0.477863,0.652558,0,16,13,not significant:16; pretrained closer:1,not significant:4; pretrained closer:13,Res-S26,0.652558,1.68359,1.07102
+5 pairs: scratch vs LoRA,HSPC,0.973033,not significant,pretrained closer,0.602665,1.36678,0,17,9,not significant:17,not significant:8; pretrained closer:9,PIC04,1.36678,0.378783,0.97686
+5 pairs: scratch vs LoRA,Cytotoxic CD4 T,-0.242407,not significant,not significant,-0.423498,-0.00993219,0,17,17,not significant:17,not significant:17,HC07,-0.00993219,1.98891,2.00265
+5 pairs: scratch vs LoRA,Granulocyte-like (LDG),-1.23053,scratch closer,scratch closer,-1.62396,-1.06542,0,17,16,scratch closer:17,not significant:1; scratch closer:16,Abd-S39,-1.62396,0.174048,0.0564688
+5 pairs: scratch vs LoRA,Platelet signal in monocytes (negative control),0.481466,not significant,pretrained closer,0.348968,0.537501,0,10,14,not significant:10; pretrained closer:7,not significant:3; pretrained closer:14,Abd-S39,0.348968,0.607092,0.773223
+5 pairs: scratch vs LoRA,AGGREGATE,0.22378,not significant,pretrained closer,0.142591,0.277999,0,17,11,not significant:17,not significant:6; pretrained closer:11,Abd-S39,0.142591,null,null
+58 pairs: scratch vs LoRA,C1Q-high monocyte (reference),1.01444,not significant,pretrained closer,0.746743,1.2911,0,16,14,not significant:16; pretrained closer:1,not significant:3; pretrained closer:14,IC23,1.2911,0.399583,0.977837
+58 pairs: scratch vs LoRA,Cycling T/NK,1.14745,pretrained closer,pretrained closer,0.908559,1.3105,0,16,17,not significant:1; pretrained closer:16,pretrained closer:17,Res-PS25,0.908559,0.447002,0.839099
+58 pairs: scratch vs LoRA,Cycling activated T (CD38/HLA-DR),0.372211,not significant,not significant,0.167676,0.541092,0,17,17,not significant:17,not significant:17,Res-PS25,0.167676,0.30918,0.347286
+58 pairs: scratch vs LoRA,Proliferating T (label),-0.400551,not significant,not significant,-0.573621,-0.277942,0,17,12,not significant:17,not significant:12; scratch closer:5,Abd-PS19,-0.573621,1.03257,1.53672
+58 pairs: scratch vs LoRA,Plasmablast (label),-1.48393,not significant,not significant,-1.65664,-0.932338,0,17,11,not significant:17,not significant:11; scratch closer:6,Abd-PS23,-0.932338,1.07124,2.04432
+58 pairs: scratch vs LoRA,Plasmablast (markers),0.580247,not significant,pretrained closer,0.22163,0.717391,0,17,8,not significant:17,not significant:9; pretrained closer:8,Abd-PS23,0.22163,0.54148,0.631393
+58 pairs: scratch vs LoRA,MS1 monocyte (IL1R2+),-0.972054,not significant,scratch closer,-1.09304,-0.649538,0,10,14,not significant:10; scratch closer:7,not significant:3; scratch closer:14,Abd-S66,-0.649538,0.299266,0.190778
+58 pairs: scratch vs LoRA,Cycling monocyte (Ye 2026),0.0484442,not significant,not significant,-0.261442,0.258807,4,17,17,not significant:17,not significant:17,Abd-S123,-0.261442,0.0989786,0.0825733
+58 pairs: scratch vs LoRA,ISG-high monocyte (positive control),0.507772,not significant,not significant,-0.00816192,0.655513,1,17,17,not significant:17,not significant:17,Res-S139,-0.00816192,0.343574,0.341636
+58 pairs: scratch vs LoRA,ISG-high T,1.12443,not significant,not significant,0.329922,1.29232,0,16,16,not significant:16; pretrained closer:1,not significant:16; pretrained closer:1,Res-S139,0.329922,0.225925,0.283975
+58 pairs: scratch vs LoRA,DN2 / ABC B,-0.849022,not significant,not significant,-1.19346,-0.669234,0,11,11,not significant:11; scratch closer:6,not significant:11; scratch closer:6,Abd-S123,-1.19346,0.612782,0.267941
+58 pairs: scratch vs LoRA,HSPC,-0.324538,not significant,not significant,-0.964752,0.14157,1,17,17,not significant:17,not significant:17,HC07,-0.964752,1.34416,0.38118
+58 pairs: scratch vs LoRA,Cytotoxic CD4 T,0.161312,not significant,not significant,0.0335065,0.234335,0,17,17,not significant:17,not significant:17,HC01,0.0335065,0.856863,0.876996
+58 pairs: scratch vs LoRA,Granulocyte-like (LDG),-0.169463,not significant,not significant,-0.389675,-0.00108446,0,17,17,not significant:17,not significant:17,Abd-S123,-0.389675,0.0439051,0.0335128
+58 pairs: scratch vs LoRA,Platelet signal in monocytes (negative control),0.479526,not significant,not significant,0.306505,0.647295,0,16,16,not significant:16; pretrained closer:1,not significant:16; pretrained closer:1,Abd-S123,0.306505,0.415848,0.514283
+58 pairs: scratch vs LoRA,AGGREGATE,0.0191519,not significant,not significant,-0.07627,0.0645388,7,17,17,not significant:17,not significant:17,Abd-S123,-0.07627,null,null
+58 pairs: scratch vs full FT,C1Q-high monocyte (reference),0.969945,not significant,pretrained closer,0.81553,1.07113,0,15,17,not significant:15; pretrained closer:2,pretrained closer:17,Abd-S39,0.81553,0.433343,0.76266
+58 pairs: scratch vs full FT,Cycling T/NK,0.814966,not significant,not significant,0.462287,1.03539,0,16,16,not significant:16; pretrained closer:1,not significant:16; pretrained closer:1,Res-S139,0.462287,0.493761,1.47001
+58 pairs: scratch vs full FT,Cycling activated T (CD38/HLA-DR),0.869821,pretrained closer,pretrained closer,0.754328,1.0671,0,17,17,pretrained closer:17,pretrained closer:17,PHC03,1.0671,0.283125,0.593208
+58 pairs: scratch vs full FT,Proliferating T (label),-0.708811,scratch closer,scratch closer,-0.830467,-0.635685,0,17,17,scratch closer:17,scratch closer:17,Abd-PS19,-0.830467,1.03257,1.83617
+58 pairs: scratch vs full FT,Plasmablast (label),-1.40085,scratch closer,scratch closer,-1.55308,-1.13909,0,12,17,not significant:5; scratch closer:12,scratch closer:17,Skin-S140,-1.13909,1.20481,2.6535
+58 pairs: scratch vs full FT,Plasmablast (markers),0.429526,not significant,not significant,0.162686,0.685667,0,17,15,not significant:17,not significant:15; pretrained closer:2,Res-PS25,0.162686,0.709544,1.25906
+58 pairs: scratch vs full FT,MS1 monocyte (IL1R2+),-0.163893,not significant,not significant,-0.341988,0.245251,1,17,17,not significant:17,not significant:17,Abd-S66,0.245251,0.299266,0.35472
+58 pairs: scratch vs full FT,Cycling monocyte (Ye 2026),0.385221,not significant,not significant,0.211561,0.593178,0,17,17,not significant:17,not significant:17,HC07,0.593178,0.080326,0.121177
+58 pairs: scratch vs full FT,ISG-high monocyte (positive control),0.909549,not significant,not significant,0.150525,1.0558,0,17,17,not significant:17,not significant:17,Res-S139,0.150525,0.343574,0.381358
+58 pairs: scratch vs full FT,ISG-high T,1.39275,not significant,not significant,0.373555,1.6881,0,16,14,not significant:16; pretrained closer:1,not significant:14; pretrained closer:3,Res-S139,0.373555,0.225925,0.292695
+58 pairs: scratch vs full FT,DN2 / ABC B,-0.763931,not significant,scratch closer,-0.944175,-0.609228,0,11,11,not significant:11; scratch closer:6,not significant:6; scratch closer:11,Skin-S140,-0.944175,0.654073,0.339939
+58 pairs: scratch vs full FT,HSPC,0.111118,not significant,not significant,-0.217329,0.50977,5,17,17,not significant:17,not significant:17,Abd-S39,0.50977,1.58949,0.895776
+58 pairs: scratch vs full FT,Cytotoxic CD4 T,-0.093794,not significant,not significant,-0.230195,0.0794466,2,17,17,not significant:17,not significant:17,IC23,0.0794466,0.733973,1.28945
+58 pairs: scratch vs full FT,Granulocyte-like (LDG),-0.0587304,not significant,not significant,-0.198936,0.0649322,3,17,17,not significant:17,not significant:17,Res-S139,-0.198936,0.0479631,0.0417851
+58 pairs: scratch vs full FT,Platelet signal in monocytes (negative control),0.83285,pretrained closer,pretrained closer,0.720476,0.970989,0,17,17,pretrained closer:17,pretrained closer:17,Abd-PS19,0.970989,0.360284,0.706222
+58 pairs: scratch vs full FT,AGGREGATE,0.13718,not significant,not significant,0.0381091,0.203836,0,17,17,not significant:17,not significant:17,Res-S139,0.0381091,null,null
+58 pairs + recipes: scratch vs LoRA,C1Q-high monocyte (reference),0.231478,not significant,not significant,-0.00243758,0.434781,1,17,17,not significant:17,not significant:17,Abd-S39,-0.00243758,0.523787,0.522903
+58 pairs + recipes: scratch vs LoRA,Cycling T/NK,1.03136,not significant,pretrained closer,0.843111,1.28645,0,11,16,not significant:11; pretrained closer:6,not significant:1; pretrained closer:16,HC01,1.28645,0.405463,1.01109
+58 pairs + recipes: scratch vs LoRA,Cycling activated T (CD38/HLA-DR),0.705079,not significant,not significant,0.563548,0.987185,0,14,15,not significant:14; pretrained closer:3,not significant:15; pretrained closer:2,HC01,0.987185,0.246741,0.489118
+58 pairs + recipes: scratch vs LoRA,Proliferating T (label),-0.790693,scratch closer,scratch closer,-0.85308,-0.66301,0,14,17,not significant:3; scratch closer:14,scratch closer:17,Abd-PS23,-0.66301,0.935239,1.69302
+58 pairs + recipes: scratch vs LoRA,Plasmablast (label),-0.966525,not significant,scratch closer,-1.11044,-0.571488,0,17,9,not significant:17,not significant:8; scratch closer:9,Abd-PS23,-0.571488,1.07124,1.59193
+58 pairs + recipes: scratch vs LoRA,Plasmablast (markers),-0.0467015,not significant,not significant,-0.391681,0.0397198,4,17,17,not significant:17,not significant:17,Abd-PS23,-0.391681,0.634052,0.4833
+58 pairs + recipes: scratch vs LoRA,MS1 monocyte (IL1R2+),-0.617507,not significant,not significant,-0.883866,-0.189863,0,17,17,not significant:17,not significant:17,Abd-S66,-0.189863,0.342471,0.300241
+58 pairs + recipes: scratch vs LoRA,Cycling monocyte (Ye 2026),0.141031,not significant,not significant,-0.0688819,0.316816,4,17,17,not significant:17,not significant:17,Abd-S39,-0.0688819,0.0842718,0.0803427
+58 pairs + recipes: scratch vs LoRA,ISG-high monocyte (positive control),1.17732,not significant,not significant,0.308414,1.56172,0,16,15,not significant:16; pretrained closer:1,not significant:15; pretrained closer:2,Res-S139,0.308414,0.307128,0.38033
+58 pairs + recipes: scratch vs LoRA,ISG-high T,1.52359,pretrained closer,pretrained closer,0.555773,1.7044,0,12,14,not significant:5; pretrained closer:12,not significant:3; pretrained closer:14,Res-S139,0.555773,0.226828,0.333428
+58 pairs + recipes: scratch vs LoRA,DN2 / ABC B,-0.696454,scratch closer,scratch closer,-0.811469,-0.591708,0,13,9,not significant:4; scratch closer:13,not significant:8; scratch closer:9,Abd-S39,-0.811469,0.482005,0.274647
+58 pairs + recipes: scratch vs LoRA,HSPC,-0.418616,not significant,not significant,-0.793537,-0.158451,0,17,17,not significant:17,not significant:17,HC07,-0.793537,1.01514,0.568323
+58 pairs + recipes: scratch vs LoRA,Cytotoxic CD4 T,-0.055263,not significant,not significant,-0.145145,0.163723,4,17,17,not significant:17,not significant:17,HC07,0.163723,1.40262,1.25214
+58 pairs + recipes: scratch vs LoRA,Granulocyte-like (LDG),-1.19323,scratch closer,scratch closer,-1.39994,-0.956463,0,17,17,scratch closer:17,scratch closer:17,Abd-PS19,-0.956463,0.0479641,0.0247168
+58 pairs + recipes: scratch vs LoRA,Platelet signal in monocytes (negative control),0.289324,not significant,not significant,0.121007,0.494914,0,17,17,not significant:17,not significant:17,Abd-PS19,0.494914,0.388171,0.547025
+58 pairs + recipes: scratch vs LoRA,AGGREGATE,-0.0886499,not significant,not significant,-0.186314,0.0136618,1,17,17,not significant:17,not significant:17,HC01,0.0136618,null,null
+ref: scratch 5 pairs vs zero-shot,C1Q-high monocyte (reference),-5.25527,scratch closer,scratch closer,-5.57956,-4.83189,0,17,17,scratch closer:17,scratch closer:17,Abd-PS23,-4.83189,1.20457,0.029149
+ref: scratch 5 pairs vs zero-shot,Cycling T/NK,-0.381514,not significant,not significant,-0.717416,0.0876405,1,17,17,not significant:17,not significant:17,Abd-PS23,0.0876405,0.430583,2.18555
+ref: scratch 5 pairs vs zero-shot,Cycling activated T (CD38/HLA-DR),0.687241,pretrained closer,pretrained closer,0.459005,0.804186,0,6,10,not significant:11; pretrained closer:6,not significant:7; pretrained closer:10,Res-S26,0.459005,0.420213,0.577622
+ref: scratch 5 pairs vs zero-shot,Proliferating T (label),-1.5028,scratch closer,scratch closer,-1.61164,-1.26946,0,17,17,scratch closer:17,scratch closer:17,Res-S139,-1.26946,1.48036,3.56874
+ref: scratch 5 pairs vs zero-shot,Plasmablast (label),-0.420788,not significant,not significant,-0.518088,0.212428,1,17,17,not significant:17,not significant:17,Abd-PS23,0.212428,1.16514,0.994421
+ref: scratch 5 pairs vs zero-shot,Plasmablast (markers),1.15877,pretrained closer,pretrained closer,0.672834,1.25502,0,13,17,not significant:4; pretrained closer:13,pretrained closer:17,Abd-PS23,0.672834,0.345315,0.550502
+ref: scratch 5 pairs vs zero-shot,MS1 monocyte (IL1R2+),-0.189793,not significant,not significant,-0.586744,-0.0676192,0,17,17,not significant:17,not significant:17,Skin-S140,-0.586744,0.122418,0.0815109
+ref: scratch 5 pairs vs zero-shot,Cycling monocyte (Ye 2026),0.59422,not significant,not significant,0.274312,0.792406,0,17,17,not significant:17,not significant:17,Abd-PS23,0.274312,0.084079,0.101687
+ref: scratch 5 pairs vs zero-shot,ISG-high monocyte (positive control),0.22661,not significant,not significant,-0.187124,0.576224,4,17,17,not significant:17,not significant:17,HC07,-0.187124,0.38252,2.97629
+ref: scratch 5 pairs vs zero-shot,ISG-high T,1.31443,not significant,not significant,0.732305,1.63643,0,16,16,not significant:16; pretrained closer:1,not significant:16; pretrained closer:1,HC07,0.732305,0.174577,3.44801
+ref: scratch 5 pairs vs zero-shot,DN2 / ABC B,0.366263,not significant,not significant,0.269817,0.442633,0,17,13,not significant:17,not significant:13; pretrained closer:4,Skin-S140,0.269817,1.42508,1.182
+ref: scratch 5 pairs vs zero-shot,HSPC,0.860574,not significant,not significant,0.461302,1.19836,0,17,13,not significant:17,not significant:13; pretrained closer:4,Skin-S140,0.461302,0.503452,0.693144
+ref: scratch 5 pairs vs zero-shot,Cytotoxic CD4 T,-0.459472,not significant,not significant,-0.71655,0.153835,1,17,17,not significant:17,not significant:17,HC07,0.153835,1.98891,0.559364
+ref: scratch 5 pairs vs zero-shot,Granulocyte-like (LDG),0.120737,not significant,not significant,-0.0168325,0.345553,1,17,17,not significant:17,not significant:17,Abd-S39,0.345553,0.174048,0.221152
+ref: scratch 5 pairs vs zero-shot,Platelet signal in monocytes (negative control),-0.733021,scratch closer,scratch closer,-0.902554,-0.679131,0,17,17,scratch closer:17,scratch closer:17,Skin-S140,-0.902554,0.592947,0.31719
+ref: scratch 5 pairs vs zero-shot,AGGREGATE,-0.239032,not significant,not significant,-0.339916,-0.169876,0,13,13,not significant:13; scratch closer:4,not significant:13; scratch closer:4,Skin-S140,-0.339916,null,null
+ref: scratch 58 pairs vs zero-shot,C1Q-high monocyte (reference),-4.17209,scratch closer,scratch closer,-4.54989,-3.97832,0,17,17,scratch closer:17,scratch closer:17,Skin-S140,-4.54989,0.474788,0.0202696
+ref: scratch 58 pairs vs zero-shot,Cycling T/NK,-0.0983106,not significant,not significant,-0.466316,0.228202,4,17,17,not significant:17,not significant:17,Res-S139,-0.466316,0.493761,2.79807
+ref: scratch 58 pairs vs zero-shot,Cycling activated T (CD38/HLA-DR),1.04112,pretrained closer,pretrained closer,0.747938,1.27324,0,11,13,not significant:6; pretrained closer:11,not significant:4; pretrained closer:13,Res-S26,0.747938,0.343947,0.577622
+ref: scratch 58 pairs vs zero-shot,Proliferating T (label),-1.77913,scratch closer,scratch closer,-1.97639,-1.50743,0,17,17,scratch closer:17,scratch closer:17,Res-S139,-1.50743,1.25526,3.56874
+ref: scratch 58 pairs vs zero-shot,Plasmablast (label),-0.280354,not significant,not significant,-0.430329,0.091214,1,17,17,not significant:17,not significant:17,Abd-PS23,0.091214,1.07124,0.994421
+ref: scratch 58 pairs vs zero-shot,Plasmablast (markers),0.284679,not significant,not significant,0.0238409,0.381994,0,17,17,not significant:17,not significant:17,Abd-PS23,0.0238409,0.54148,0.550502
+ref: scratch 58 pairs vs zero-shot,MS1 monocyte (IL1R2+),-2.26777,scratch closer,scratch closer,-2.61142,-1.73473,0,17,17,scratch closer:17,scratch closer:17,Abd-S66,-1.73473,0.299266,0.0899193
+ref: scratch 58 pairs vs zero-shot,Cycling monocyte (Ye 2026),0.0906723,not significant,not significant,-0.216407,0.295762,4,17,17,not significant:17,not significant:17,Skin-S140,-0.216407,0.114848,0.0988506
+ref: scratch 58 pairs vs zero-shot,ISG-high monocyte (positive control),0.308419,not significant,not significant,-0.00939781,0.728253,1,17,17,not significant:17,not significant:17,PIC04,0.728253,0.261683,2.30674
+ref: scratch 58 pairs vs zero-shot,ISG-high T,1.09668,not significant,not significant,0.702706,1.4059,0,16,17,not significant:16; pretrained closer:1,not significant:17,HC07,0.702706,0.178195,3.44801
+ref: scratch 58 pairs vs zero-shot,DN2 / ABC B,0.307145,not significant,not significant,-0.377349,0.584398,1,17,17,not significant:17,not significant:17,Abd-PS23,-0.377349,0.782961,1.65903
+ref: scratch 58 pairs vs zero-shot,HSPC,0.28445,not significant,not significant,-0.112164,0.548393,1,17,17,not significant:17,not significant:17,Skin-S140,-0.112164,1.33479,0.693144
+ref: scratch 58 pairs vs zero-shot,Cytotoxic CD4 T,-0.748626,not significant,scratch closer,-0.972429,-0.549351,0,14,10,not significant:14; scratch closer:3,not significant:7; scratch closer:10,HC01,-0.972429,0.856863,0.436698
+ref: scratch 58 pairs vs zero-shot,Granulocyte-like (LDG),1.68558,pretrained closer,pretrained closer,1.53123,1.912,0,17,17,pretrained closer:17,pretrained closer:17,Abd-PS19,1.912,0.0371182,0.139687
+ref: scratch 58 pairs vs zero-shot,Platelet signal in monocytes (negative control),-0.125732,not significant,not significant,-0.297314,0.0400186,1,17,17,not significant:17,not significant:17,Skin-S140,-0.297314,0.389781,0.31719
+ref: scratch 58 pairs vs zero-shot,AGGREGATE,-0.350458,scratch closer,scratch closer,-0.449625,-0.284175,0,17,17,scratch closer:17,scratch closer:17,Skin-S140,-0.449625,null,null
+ref: scratch 58 + recipes vs zero-shot,C1Q-high monocyte (reference),-4.36141,scratch closer,scratch closer,-4.72858,-4.18352,0,17,17,scratch closer:17,scratch closer:17,Skin-S140,-4.72858,0.537392,0.0202696
+ref: scratch 58 + recipes vs zero-shot,Cycling T/NK,-0.298235,not significant,not significant,-0.526442,0.0554921,1,17,17,not significant:17,not significant:17,Abd-PS23,0.0554921,0.440285,2.18555
+ref: scratch 58 + recipes vs zero-shot,Cycling activated T (CD38/HLA-DR),1.21407,pretrained closer,pretrained closer,0.95389,1.49619,0,17,17,pretrained closer:17,pretrained closer:17,HC01,1.49619,0.246741,0.69605
+ref: scratch 58 + recipes vs zero-shot,Proliferating T (label),-1.92919,scratch closer,scratch closer,-2.10679,-1.69173,0,17,17,scratch closer:17,scratch closer:17,Abd-PS23,-1.69173,0.935239,3.45414
+ref: scratch 58 + recipes vs zero-shot,Plasmablast (label),-0.35766,not significant,not significant,-0.514984,0.091214,1,17,17,not significant:17,not significant:17,Abd-PS23,0.091214,1.07124,0.994421
+ref: scratch 58 + recipes vs zero-shot,Plasmablast (markers),0.0914443,not significant,not significant,-0.203853,0.175859,2,17,17,not significant:17,not significant:17,Abd-PS23,-0.203853,0.634052,0.550502
+ref: scratch 58 + recipes vs zero-shot,MS1 monocyte (IL1R2+),-2.45939,scratch closer,scratch closer,-2.84926,-1.92928,0,17,17,scratch closer:17,scratch closer:17,Abd-S66,-1.92928,0.342471,0.0899193
+ref: scratch 58 + recipes vs zero-shot,Cycling monocyte (Ye 2026),0.0819822,not significant,not significant,-0.282377,0.359116,3,17,17,not significant:17,not significant:17,Skin-S140,-0.282377,0.120222,0.0988506
+ref: scratch 58 + recipes vs zero-shot,ISG-high monocyte (positive control),0.525138,not significant,not significant,0.176355,1.26323,0,17,17,not significant:17,not significant:17,PIC04,1.26323,0.180605,2.30674
+ref: scratch 58 + recipes vs zero-shot,ISG-high T,0.984085,not significant,not significant,0.428847,1.28503,0,16,16,not significant:16; pretrained closer:1,not significant:16; pretrained closer:1,HC07,0.428847,0.215445,3.44801
+ref: scratch 58 + recipes vs zero-shot,DN2 / ABC B,0.768926,not significant,not significant,0.055615,1.00384,0,17,17,not significant:17,not significant:17,Abd-PS23,0.055615,0.579969,1.65903
+ref: scratch 58 + recipes vs zero-shot,HSPC,-0.109241,not significant,not significant,-0.451567,0.112294,4,17,17,not significant:17,not significant:17,Skin-S140,-0.451567,0.947892,0.693144
+ref: scratch 58 + recipes vs zero-shot,Cytotoxic CD4 T,-0.80987,not significant,not significant,-0.984802,-0.35002,0,17,16,not significant:17,not significant:16; scratch closer:1,HC07,-0.35002,1.40262,0.559364
+ref: scratch 58 + recipes vs zero-shot,Granulocyte-like (LDG),1.24752,pretrained closer,pretrained closer,1.09245,1.54217,0,17,17,pretrained closer:17,pretrained closer:17,Abd-PS19,1.54217,0.0479641,0.139687
+ref: scratch 58 + recipes vs zero-shot,Platelet signal in monocytes (negative control),-0.309443,not significant,not significant,-0.481224,-0.0675408,0,17,16,not significant:17,not significant:16; scratch closer:1,Abd-PS19,-0.0675408,0.388171,0.370417
+ref: scratch 58 + recipes vs zero-shot,AGGREGATE,-0.456689,scratch closer,scratch closer,-0.541992,-0.36758,0,17,17,scratch closer:17,scratch closer:17,Abd-S66,-0.36758,null,null