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  1. paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/_logs/sepsis_20261002T152649.log +194 -0
  2. paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/_logs/small_20261002T152649.jobs +4 -0
  3. paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/_logs/small_20261002T152649.log +203 -0
  4. paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/_logs/smoke_giroux_d0_20261002T152531.jobs +1 -0
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/_logs/sepsis_20261002T152649.log ADDED
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+ JOB_START 2026-10-02T15:26:49+09:00 --design fewshot --dataset ye2026_sepsis --draws 0,1,2,3,4
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+ 15:26:50 ye2026_sepsis fewshot_n5/draw0: 77 scored samples (57 case / 20 control), 5975 genes for the disease scores
3
+ 15:27:11 split half: 525088 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.988, B 0.970, Mono 0.934, NK 0.937 (21.1 s; full aggregates rebuilt = cache)
4
+ 15:27:31 zs_raw: 115500 cells; r mean_cp10k T -0.115/-0.183, B 0.050/-0.013, Mono 0.038/-0.019, NK -0.084/-0.049 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (20 s)
5
+ 15:27:49 zs_pseudo: 115500 cells; r mean_cp10k T 0.552/0.418, B 0.550/0.383, Mono 0.383/0.351, NK 0.392/0.283 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (18 s)
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+ 15:28:10 zs_cal: 115500 cells; r mean_cp10k T 0.006/0.128, B 0.164/0.262, Mono 0.153/0.097, NK -0.057/0.033 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (21 s)
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+ 15:28:57 lora5: 115500 cells; r mean_cp10k T 0.440/0.074, B 0.615/0.431, Mono 0.300/0.241, NK 0.389/0.223 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (47 s)
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+ 15:29:07 scsemi5: 115500 cells; r mean_cp10k T 0.416/0.016, B 0.396/-0.008, Mono 0.473/0.237, NK 0.365/0.018 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (10 s)
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+ 15:29:24 limma: 68 jobs in 17 s (0 not ok)
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+ 15:29:24 unit fewshot_n5/draw0 of ye2026_sepsis -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ye2026_sepsis/fewshot_n5/draw0 in 154.9 s; reproduction PASS
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+ 15:29:24 ye2026_sepsis fewshot_n5/draw1: 77 scored samples (57 case / 20 control), 5975 genes for the disease scores
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+ 15:29:37 split half: 525860 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.989, B 0.971, Mono 0.929, NK 0.940 (12.0 s; full aggregates rebuilt = cache)
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+ 15:29:40 zs_raw: 115500 cells; r mean_cp10k T -0.142/-0.190, B 0.029/-0.023, Mono 0.033/-0.026, NK -0.107/-0.063 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (4 s)
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+ 15:29:43 zs_pseudo: 115500 cells; r mean_cp10k T 0.563/0.419, B 0.561/0.396, Mono 0.383/0.333, NK 0.409/0.290 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (3 s)
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+ 15:29:59 zs_cal: 115500 cells; r mean_cp10k T -0.016/-0.005, B 0.131/0.136, Mono 0.276/0.207, NK -0.053/0.056 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (16 s)
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+ 15:30:15 lora5: 115500 cells; r mean_cp10k T -0.025/-0.029, B 0.076/0.051, Mono 0.261/0.195, NK 0.014/0.081 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (16 s)
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+ 15:30:27 scsemi5: 115500 cells; r mean_cp10k T 0.235/0.112, B 0.347/0.095, Mono 0.468/0.285, NK 0.271/0.152 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (12 s)
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+ 15:30:45 limma: 68 jobs in 17 s (0 not ok)
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+ 15:30:45 unit fewshot_n5/draw1 of ye2026_sepsis -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ye2026_sepsis/fewshot_n5/draw1 in 80.6 s; reproduction PASS
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+ 15:30:45 ye2026_sepsis fewshot_n5/draw2: 77 scored samples (57 case / 20 control), 5975 genes for the disease scores
21
+ 15:31:00 split half: 529187 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.989, B 0.971, Mono 0.942, NK 0.942 (14.4 s; full aggregates rebuilt = cache)
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+ 15:31:05 zs_raw: 115500 cells; r mean_cp10k T -0.073/-0.126, B 0.071/0.010, Mono 0.084/0.016, NK -0.061/-0.031 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (6 s)
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+ 15:31:12 zs_pseudo: 115500 cells; r mean_cp10k T 0.568/0.431, B 0.558/0.379, Mono 0.413/0.369, NK 0.419/0.294 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (7 s)
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+ 15:31:28 zs_cal: 115500 cells; r mean_cp10k T 0.141/0.127, B 0.210/0.212, Mono 0.285/0.215, NK 0.043/0.067 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (16 s)
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+ 15:31:44 lora5: 115500 cells; r mean_cp10k T 0.346/0.040, B 0.406/0.080, Mono 0.295/0.236, NK 0.262/0.075 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (16 s)
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+ 15:31:53 scsemi5: 115500 cells; r mean_cp10k T 0.367/0.317, B 0.271/0.169, Mono 0.244/0.168, NK 0.359/0.204 (Pearson/Spearman); repro PASS (max |d| 9.9e-17) (9 s)
27
+ 15:32:10 limma: 68 jobs in 17 s (0 not ok)
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+ 15:32:10 unit fewshot_n5/draw2 of ye2026_sepsis -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ye2026_sepsis/fewshot_n5/draw2 in 85.7 s; reproduction PASS
29
+ 15:32:11 ye2026_sepsis fewshot_n5/draw3: 77 scored samples (57 case / 20 control), 5975 genes for the disease scores
30
+ 15:32:23 split half: 519267 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.989, B 0.973, Mono 0.930, NK 0.939 (12.0 s; full aggregates rebuilt = cache)
31
+ 15:32:30 zs_raw: 115500 cells; r mean_cp10k T -0.097/-0.139, B 0.059/0.021, Mono 0.024/-0.020, NK -0.081/-0.034 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (7 s)
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+ 15:32:36 zs_pseudo: 115500 cells; r mean_cp10k T 0.571/0.420, B 0.552/0.372, Mono 0.404/0.355, NK 0.402/0.277 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (6 s)
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+ 15:32:56 zs_cal: 115500 cells; r mean_cp10k T 0.034/0.104, B 0.162/0.172, Mono 0.211/0.161, NK -0.018/0.059 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (20 s)
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+ 15:33:16 lora5: 115500 cells; r mean_cp10k T 0.508/0.352, B 0.454/0.347, Mono 0.352/0.263, NK 0.329/0.231 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (19 s)
35
+ 15:33:28 scsemi5: 115500 cells; r mean_cp10k T 0.463/0.249, B 0.498/0.266, Mono 0.485/0.200, NK 0.580/0.240 (Pearson/Spearman); repro PASS (max |d| 9.4e-17) (12 s)
36
+ 15:33:51 limma: 68 jobs in 23 s (0 not ok)
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+ 15:33:52 unit fewshot_n5/draw3 of ye2026_sepsis -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ye2026_sepsis/fewshot_n5/draw3 in 101.2 s; reproduction PASS
38
+ 15:33:52 ye2026_sepsis fewshot_n5/draw4: 77 scored samples (57 case / 20 control), 5975 genes for the disease scores
39
+ 15:34:08 split half: 514723 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.989, B 0.971, Mono 0.930, NK 0.940 (16.2 s; full aggregates rebuilt = cache)
40
+ 15:34:15 zs_raw: 115500 cells; r mean_cp10k T -0.097/-0.148, B 0.032/-0.016, Mono 0.045/-0.009, NK -0.089/-0.045 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (7 s)
41
+ 15:34:22 zs_pseudo: 115500 cells; r mean_cp10k T 0.564/0.423, B 0.546/0.362, Mono 0.402/0.369, NK 0.405/0.290 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (7 s)
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+ 15:34:41 zs_cal: 115500 cells; r mean_cp10k T 0.001/0.169, B 0.124/0.214, Mono 0.157/0.131, NK -0.043/0.037 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (19 s)
43
+ 15:35:00 lora5: 115500 cells; r mean_cp10k T 0.610/0.473, B 0.591/0.482, Mono 0.352/0.297, NK 0.428/0.275 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (19 s)
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+ 15:35:17 scsemi5: 115500 cells; r mean_cp10k T 0.425/0.087, B 0.443/0.031, Mono 0.449/0.219, NK 0.495/0.087 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (16 s)
45
+ 15:35:34 limma: 68 jobs in 17 s (0 not ok)
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+ 15:35:34 unit fewshot_n5/draw4 of ye2026_sepsis -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ye2026_sepsis/fewshot_n5/draw4 in 102.2 s; reproduction PASS
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+ Command being timed: "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python tools/contrast_extra.py --design fewshot --dataset ye2026_sepsis --draws 0,1,2,3,4 --threads 4"
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+ User time (seconds): 409.73
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+ System time (seconds): 85.98
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+ Percent of CPU this job got: 94%
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+ Elapsed (wall clock) time (h:mm:ss or m:ss): 8:45.22
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+ Average shared text size (kbytes): 0
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+ Average unshared data size (kbytes): 0
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+ Average stack size (kbytes): 0
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+ Average total size (kbytes): 0
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+ Maximum resident set size (kbytes): 13211796
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+ Average resident set size (kbytes): 0
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+ Major (requiring I/O) page faults: 28
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+ Minor (reclaiming a frame) page faults: 6968959
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+ Voluntary context switches: 197113
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+ Involuntary context switches: 11918
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+ Swaps: 0
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+ File system inputs: 97637688
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+ File system outputs: 1396840
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+ Socket messages sent: 0
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+ Socket messages received: 0
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+ Signals delivered: 0
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+ Page size (bytes): 4096
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+ Exit status: 0
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+ JOB_EXIT 0 525s --design fewshot --dataset ye2026_sepsis --draws 0,1,2,3,4 --threads 4
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+ JOB_START 2026-10-02T15:35:34+09:00 --design pooled --dataset ye2026_sepsis
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+ 15:35:35 ye2026_sepsis pooled: 82 scored samples (61 case / 21 control), 5975 genes for the disease scores
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+ 15:35:47 split half: 556947 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.989, B 0.972, Mono 0.936, NK 0.944 (12.2 s; full aggregates rebuilt = cache)
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+ 15:35:48 fetching generated/ye2026_sepsis/pooled/lora_multik__raw.npz (2.75 GiB) from spark-0110
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+ 15:36:15 fetching generated/ye2026_sepsis/pooled/conditions_pooled_raw.npz (0.02 GiB) from spark-0110
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+ 15:36:16 lora_multik__raw: 123000 cells; r mean_cp10k T 0.592/0.419, B 0.541/0.380, Mono 0.562/0.480, NK 0.339/0.260 (Pearson/Spearman); repro PASS (max |d| 6.9e-17) (29 s)
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+ 15:36:16 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/lora_multik__raw.npz
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+ 15:36:17 fetching generated/ye2026_sepsis/pooled/lora_n10__raw.npz (2.75 GiB) from spark-0110
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+ 15:36:44 lora_n10__raw: 123000 cells; r mean_cp10k T 0.544/0.397, B 0.494/0.328, Mono 0.331/0.277, NK 0.319/0.284 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (28 s)
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+ 15:36:44 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/lora_n10__raw.npz
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+ 15:36:44 fetching generated/ye2026_sepsis/pooled/lora_n20__raw.npz (2.75 GiB) from spark-0110
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+ 15:37:12 lora_n20__raw: 123000 cells; r mean_cp10k T 0.425/0.308, B 0.332/0.275, Mono 0.473/0.425, NK 0.238/0.224 (Pearson/Spearman); repro PASS (max |d| 5.6e-17) (28 s)
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+ 15:37:12 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/lora_n20__raw.npz
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+ 15:37:12 fetching generated/ye2026_sepsis/pooled/lora_n40__raw.npz (2.75 GiB) from spark-0110
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+ 15:37:40 lora_n40__raw: 123000 cells; r mean_cp10k T 0.573/0.432, B 0.518/0.382, Mono 0.524/0.460, NK 0.289/0.266 (Pearson/Spearman); repro PASS (max |d| 5.6e-17) (28 s)
86
+ 15:37:40 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/lora_n40__raw.npz
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+ 15:37:40 fetching generated/ye2026_sepsis/pooled/lora_n5__raw.npz (2.75 GiB) from spark-0110
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+ 15:38:08 lora_n5__raw: 123000 cells; r mean_cp10k T 0.364/0.184, B 0.370/0.206, Mono 0.255/0.191, NK 0.187/0.121 (Pearson/Spearman); repro PASS (max |d| 5.6e-17) (28 s)
89
+ 15:38:08 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/lora_n5__raw.npz
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+ 15:38:09 fetching generated/ye2026_sepsis/pooled/lora_recipe__raw.npz (2.75 GiB) from spark-0110
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+ 15:38:36 lora_recipe__raw: 123000 cells; r mean_cp10k T 0.586/0.449, B 0.530/0.422, Mono 0.576/0.519, NK 0.291/0.281 (Pearson/Spearman); repro PASS (max |d| 5.6e-17) (28 s)
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+ 15:38:36 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/lora_recipe__raw.npz
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+ 15:38:36 fetching generated/ye2026_sepsis/pooled/pseudo_full__cal.npz (2.75 GiB) from spark-0110
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+ 15:39:03 fetching generated/ye2026_sepsis/pooled/conditions_pooled_cal.npz (0.02 GiB) from spark-0110
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+ 15:39:05 pseudo_full__cal: 123000 cells; r mean_cp10k T 0.247/0.162, B 0.315/0.174, Mono 0.523/0.413, NK 0.098/0.151 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (29 s)
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+ 15:39:05 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/pseudo_full__cal.npz
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+ 15:39:05 fetching generated/ye2026_sepsis/pooled/pseudo_full__raw.npz (2.75 GiB) from spark-0110
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+ 15:39:35 pseudo_full__raw: 123000 cells; r mean_cp10k T 0.011/-0.043, B 0.217/0.109, Mono 0.340/0.225, NK 0.027/0.105 (Pearson/Spearman); repro PASS (max |d| 7.8e-17) (30 s)
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+ 15:39:35 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/pseudo_full__raw.npz
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+ 15:39:35 fetching generated/ye2026_sepsis/pooled/real_full__raw.npz (2.75 GiB) from spark-0110
101
+ 15:40:05 real_full__raw: 123000 cells; r mean_cp10k T 0.622/0.515, B 0.598/0.420, Mono 0.631/0.517, NK 0.286/0.276 (Pearson/Spearman); repro PASS (max |d| 5.6e-17) (30 s)
102
+ 15:40:05 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/real_full__raw.npz
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+ 15:40:06 fetching generated/ye2026_sepsis/pooled/real_lora__raw.npz (2.75 GiB) from spark-0110
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+ 15:40:35 real_lora__raw: 123000 cells; r mean_cp10k T 0.626/0.455, B 0.565/0.363, Mono 0.578/0.524, NK 0.338/0.311 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (29 s)
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+ 15:40:35 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/real_lora__raw.npz
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+ 15:40:35 fetching generated/ye2026_sepsis/pooled/zs__cal.npz (2.75 GiB) from spark-0110
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+ 15:41:04 zs__cal: 123000 cells; r mean_cp10k T 0.043/0.097, B 0.160/0.132, Mono 0.246/0.200, NK 0.041/0.098 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (30 s)
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+ 15:41:04 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/zs__cal.npz
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+ 15:41:05 fetching generated/ye2026_sepsis/pooled/zs__pseudo.npz (2.75 GiB) from spark-0110
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+ 15:41:33 fetching generated/ye2026_sepsis/pooled/conditions_pooled_pseudo.npz (0.02 GiB) from spark-0110
111
+ 15:41:34 zs__pseudo: 123000 cells; r mean_cp10k T 0.554/0.392, B 0.495/0.300, Mono 0.395/0.354, NK 0.426/0.290 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (30 s)
112
+ 15:41:34 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/zs__pseudo.npz
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+ 15:41:35 fetching generated/ye2026_sepsis/pooled/zs__raw.npz (2.75 GiB) from spark-0110
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+ 15:42:05 zs__raw: 123000 cells; r mean_cp10k T -0.108/-0.179, B 0.061/-0.032, Mono 0.069/0.002, NK -0.069/-0.042 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (31 s)
115
+ 15:42:05 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/zs__raw.npz
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+ 15:42:05 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/conditions_pooled_raw.npz
117
+ 15:42:05 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/conditions_pooled_cal.npz
118
+ 15:42:05 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled/conditions_pooled_pseudo.npz
119
+ 15:42:46 limma: 146 jobs in 41 s (0 not ok)
120
+ 15:42:46 unit pooled of ye2026_sepsis -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ye2026_sepsis/pooled in 431.7 s; reproduction PASS
121
+ Command being timed: "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python tools/contrast_extra.py --design pooled --dataset ye2026_sepsis --threads 4"
122
+ User time (seconds): 277.40
123
+ System time (seconds): 70.23
124
+ Percent of CPU this job got: 80%
125
+ Elapsed (wall clock) time (h:mm:ss or m:ss): 7:12.32
126
+ Average shared text size (kbytes): 0
127
+ Average unshared data size (kbytes): 0
128
+ Average stack size (kbytes): 0
129
+ Average total size (kbytes): 0
130
+ Maximum resident set size (kbytes): 13186624
131
+ Average resident set size (kbytes): 0
132
+ Major (requiring I/O) page faults: 0
133
+ Minor (reclaiming a frame) page faults: 2046853
134
+ Voluntary context switches: 659473
135
+ Involuntary context switches: 21865
136
+ Swaps: 0
137
+ File system inputs: 117352
138
+ File system outputs: 75754096
139
+ Socket messages sent: 0
140
+ Socket messages received: 0
141
+ Signals delivered: 0
142
+ Page size (bytes): 4096
143
+ Exit status: 0
144
+ JOB_EXIT 0 432s --design pooled --dataset ye2026_sepsis --threads 4
145
+ JOB_START 2026-10-02T15:42:46+09:00 --design scored --dataset ye2026_sepsis --score-dir /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled --arms zs__cal_n5,zs__cal_n10,zs__cal_n20,zs__cal_n40 --unit cal_budget_20261001/pooled
146
+ 15:42:47 ye2026_sepsis cal_budget_20261001/pooled: 82 scored samples (61 case / 21 control), 5975 genes for the disease scores
147
+ 15:42:59 split half: 556947 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.989, B 0.972, Mono 0.936, NK 0.944 (11.9 s; full aggregates rebuilt = cache)
148
+ 15:43:00 fetching generated/ye2026_sepsis/pooled_cal_budget_20261001/zs__cal_n5.npz (2.75 GiB) from spark-0110
149
+ 15:43:28 fetching generated/ye2026_sepsis/pooled_cal_budget_20261001/conditions_pooled_cal_n5.npz (0.02 GiB) from spark-0110
150
+ 15:43:30 zs__cal_n5: 123000 cells; r mean_cp10k T -0.018/0.078, B 0.124/0.113, Mono 0.233/0.169, NK -0.022/0.061 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (31 s)
151
+ 15:43:30 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled_cal_budget_20261001/zs__cal_n5.npz
152
+ 15:43:30 fetching generated/ye2026_sepsis/pooled_cal_budget_20261001/zs__cal_n10.npz (2.75 GiB) from spark-0110
153
+ 15:43:58 fetching generated/ye2026_sepsis/pooled_cal_budget_20261001/conditions_pooled_cal_n10.npz (0.02 GiB) from spark-0110
154
+ 15:44:00 zs__cal_n10: 123000 cells; r mean_cp10k T 0.009/0.083, B 0.137/0.122, Mono 0.216/0.165, NK 0.020/0.096 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (30 s)
155
+ 15:44:00 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled_cal_budget_20261001/zs__cal_n10.npz
156
+ 15:44:00 fetching generated/ye2026_sepsis/pooled_cal_budget_20261001/zs__cal_n20.npz (2.75 GiB) from spark-0110
157
+ 15:44:28 fetching generated/ye2026_sepsis/pooled_cal_budget_20261001/conditions_pooled_cal_n20.npz (0.02 GiB) from spark-0110
158
+ 15:44:30 zs__cal_n20: 123000 cells; r mean_cp10k T 0.032/0.102, B 0.147/0.096, Mono 0.235/0.184, NK -0.005/0.083 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (30 s)
159
+ 15:44:30 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled_cal_budget_20261001/zs__cal_n20.npz
160
+ 15:44:30 fetching generated/ye2026_sepsis/pooled_cal_budget_20261001/zs__cal_n40.npz (2.75 GiB) from spark-0110
161
+ 15:44:58 fetching generated/ye2026_sepsis/pooled_cal_budget_20261001/conditions_pooled_cal_n40.npz (0.02 GiB) from spark-0110
162
+ 15:45:00 zs__cal_n40: 123000 cells; r mean_cp10k T 0.038/0.105, B 0.151/0.116, Mono 0.245/0.204, NK 0.041/0.090 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (30 s)
163
+ 15:45:00 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled_cal_budget_20261001/zs__cal_n40.npz
164
+ 15:45:00 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled_cal_budget_20261001/conditions_pooled_cal_n5.npz
165
+ 15:45:00 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled_cal_budget_20261001/conditions_pooled_cal_n10.npz
166
+ 15:45:00 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled_cal_budget_20261001/conditions_pooled_cal_n20.npz
167
+ 15:45:00 removed fetched copy /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/_fetch_tmp/generated/ye2026_sepsis/pooled_cal_budget_20261001/conditions_pooled_cal_n40.npz
168
+ 15:45:20 limma: 58 jobs in 20 s (0 not ok)
169
+ 15:45:20 unit cal_budget_20261001/pooled of ye2026_sepsis -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ye2026_sepsis/cal_budget_20261001/pooled in 153.3 s; reproduction PASS
170
+ Command being timed: "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python tools/contrast_extra.py --design scored --dataset ye2026_sepsis --score-dir /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled --arms zs__cal_n5,zs__cal_n10,zs__cal_n20,zs__cal_n40 --unit cal_budget_20261001/pooled --threads 4"
171
+ User time (seconds): 102.84
172
+ System time (seconds): 24.11
173
+ Percent of CPU this job got: 82%
174
+ Elapsed (wall clock) time (h:mm:ss or m:ss): 2:33.89
175
+ Average shared text size (kbytes): 0
176
+ Average unshared data size (kbytes): 0
177
+ Average stack size (kbytes): 0
178
+ Average total size (kbytes): 0
179
+ Maximum resident set size (kbytes): 13202260
180
+ Average resident set size (kbytes): 0
181
+ Major (requiring I/O) page faults: 1
182
+ Minor (reclaiming a frame) page faults: 901908
183
+ Voluntary context switches: 214281
184
+ Involuntary context switches: 6052
185
+ Swaps: 0
186
+ File system inputs: 9640
187
+ File system outputs: 23504192
188
+ Socket messages sent: 0
189
+ Socket messages received: 0
190
+ Signals delivered: 0
191
+ Page size (bytes): 4096
192
+ Exit status: 0
193
+ JOB_EXIT 0 154s --design scored --dataset ye2026_sepsis --score-dir /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/cal_budget_20261001/pooled --arms zs__cal_n5,zs__cal_n10,zs__cal_n20,zs__cal_n40 --unit cal_budget_20261001/pooled --threads 4
194
+ UNIT_EXIT 0
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/_logs/small_20261002T152649.jobs ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ --design fewshot --dataset giroux2022 --draws 0,1,2,3,4
2
+ --design pooled --dataset giroux2022
3
+ --design fewshot --dataset ji2025_chili --draws 0,1,2,3,4
4
+ --design pooled --dataset ji2025_chili
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/_logs/small_20261002T152649.log ADDED
@@ -0,0 +1,203 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ JOB_START 2026-10-02T15:26:49+09:00 --design fewshot --dataset giroux2022 --draws 0,1,2,3,4
2
+ 15:26:49 /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw0 done already
3
+ 15:26:50 giroux2022 fewshot_n5/draw1: 10 scored samples (6 case / 4 control), 5498 genes for the disease scores (65 excluded)
4
+ 15:26:57 split half: 92056 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.973, B 0.729, Mono 0.916, NK 0.860 (7.3 s; full aggregates rebuilt = cache)
5
+ 15:27:05 zs_raw: 15000 cells; r mean_cp10k T 0.694/0.614, B 0.114/0.038, Mono 0.281/0.150, NK 0.406/0.292 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (8 s)
6
+ 15:27:11 zs_pseudo: 15000 cells; r mean_cp10k T 0.631/0.517, B 0.169/0.095, Mono 0.200/0.101, NK 0.369/0.233 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (6 s)
7
+ 15:27:13 zs_cal: 15000 cells; r mean_cp10k T 0.566/0.446, B 0.173/0.119, Mono 0.185/0.119, NK 0.392/0.238 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (2 s)
8
+ 15:27:15 lora5: 15000 cells; r mean_cp10k T 0.619/0.484, B 0.186/0.129, Mono 0.340/0.198, NK 0.280/0.205 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (2 s)
9
+ 15:27:17 scsemi5: 15000 cells; r mean_cp10k T 0.456/0.368, B 0.339/0.181, Mono 0.478/0.317, NK 0.422/0.295 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (2 s)
10
+ 15:27:25 limma: 68 jobs in 7 s (0 not ok)
11
+ 15:27:25 unit fewshot_n5/draw1 of giroux2022 -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw1 in 35.4 s; reproduction PASS
12
+ 15:27:25 giroux2022 fewshot_n5/draw2: 12 scored samples (6 case / 6 control), 5498 genes for the disease scores (65 excluded)
13
+ 15:27:29 split half: 119176 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.972, B 0.862, Mono 0.909, NK 0.900 (4.4 s; full aggregates rebuilt = cache)
14
+ 15:27:30 zs_raw: 18000 cells; r mean_cp10k T 0.144/0.017, B 0.062/-0.000, Mono 0.226/0.182, NK 0.095/-0.006 (Pearson/Spearman); repro PASS (max |d| 9.4e-17) (1 s)
15
+ 15:27:31 zs_pseudo: 18000 cells; r mean_cp10k T 0.525/0.450, B 0.248/0.229, Mono 0.212/0.182, NK 0.359/0.302 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (1 s)
16
+ 15:27:34 zs_cal: 18000 cells; r mean_cp10k T 0.142/0.046, B 0.077/0.044, Mono 0.174/0.102, NK 0.099/-0.004 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (3 s)
17
+ 15:27:37 lora5: 18000 cells; r mean_cp10k T 0.393/0.244, B 0.113/0.076, Mono 0.317/0.249, NK 0.099/0.054 (Pearson/Spearman); repro PASS (max |d| 9.4e-17) (3 s)
18
+ 15:27:39 scsemi5: 18000 cells; r mean_cp10k T 0.431/0.375, B 0.199/0.093, Mono 0.481/0.343, NK 0.368/0.256 (Pearson/Spearman); repro PASS (max |d| 9.4e-17) (2 s)
19
+ 15:27:47 limma: 68 jobs in 8 s (0 not ok)
20
+ 15:27:47 unit fewshot_n5/draw2 of giroux2022 -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw2 in 22.2 s; reproduction PASS
21
+ 15:27:47 giroux2022 fewshot_n5/draw3: 11 scored samples (6 case / 5 control), 5498 genes for the disease scores (65 excluded)
22
+ 15:27:51 split half: 112177 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.978, B 0.886, Mono 0.895, NK 0.904 (4.2 s; full aggregates rebuilt = cache)
23
+ 15:27:52 zs_raw: 16500 cells; r mean_cp10k T 0.278/0.118, B 0.183/0.086, Mono 0.183/0.092, NK 0.191/0.063 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (1 s)
24
+ 15:27:53 zs_pseudo: 16500 cells; r mean_cp10k T 0.605/0.531, B 0.340/0.281, Mono 0.210/0.183, NK 0.407/0.338 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (1 s)
25
+ 15:27:56 zs_cal: 16500 cells; r mean_cp10k T 0.206/0.130, B 0.100/0.047, Mono 0.133/0.054, NK 0.102/0.016 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (3 s)
26
+ 15:27:59 lora5: 16500 cells; r mean_cp10k T 0.452/0.333, B 0.154/0.126, Mono 0.236/0.180, NK 0.125/0.063 (Pearson/Spearman); repro PASS (max |d| 9.4e-17) (3 s)
27
+ 15:28:01 scsemi5: 16500 cells; r mean_cp10k T 0.486/0.441, B 0.228/0.130, Mono 0.358/0.251, NK 0.374/0.230 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (2 s)
28
+ 15:28:08 limma: 68 jobs in 7 s (0 not ok)
29
+ 15:28:08 unit fewshot_n5/draw3 of giroux2022 -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw3 in 21.2 s; reproduction PASS
30
+ 15:28:08 giroux2022 fewshot_n5/draw4: 10 scored samples (5 case / 5 control), 5498 genes for the disease scores (65 excluded)
31
+ 15:28:15 split half: 94640 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.974, B 0.766, Mono 0.929, NK 0.873 (6.5 s; full aggregates rebuilt = cache)
32
+ 15:28:19 zs_raw: 15000 cells; r mean_cp10k T 0.644/0.534, B 0.242/0.032, Mono 0.323/0.123, NK 0.452/0.251 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (4 s)
33
+ 15:28:21 zs_pseudo: 15000 cells; r mean_cp10k T 0.595/0.421, B 0.317/0.118, Mono 0.419/0.166, NK 0.383/0.198 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (2 s)
34
+ 15:28:28 zs_cal: 15000 cells; r mean_cp10k T 0.588/0.403, B 0.307/0.114, Mono 0.387/0.244, NK 0.474/0.253 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (7 s)
35
+ 15:28:35 lora5: 15000 cells; r mean_cp10k T 0.587/0.400, B 0.277/0.109, Mono 0.388/0.109, NK 0.392/0.202 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (8 s)
36
+ 15:28:39 scsemi5: 15000 cells; r mean_cp10k T 0.555/0.459, B 0.352/0.167, Mono 0.513/0.259, NK 0.415/0.274 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (3 s)
37
+ 15:28:44 limma: 68 jobs in 5 s (0 not ok)
38
+ 15:28:44 unit fewshot_n5/draw4 of giroux2022 -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw4 in 35.9 s; reproduction PASS
39
+ Command being timed: "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python tools/contrast_extra.py --design fewshot --dataset giroux2022 --draws 0,1,2,3,4 --threads 4"
40
+ User time (seconds): 81.22
41
+ System time (seconds): 29.98
42
+ Percent of CPU this job got: 96%
43
+ Elapsed (wall clock) time (h:mm:ss or m:ss): 1:55.44
44
+ Average shared text size (kbytes): 0
45
+ Average unshared data size (kbytes): 0
46
+ Average stack size (kbytes): 0
47
+ Average total size (kbytes): 0
48
+ Maximum resident set size (kbytes): 2446004
49
+ Average resident set size (kbytes): 0
50
+ Major (requiring I/O) page faults: 2
51
+ Minor (reclaiming a frame) page faults: 2343575
52
+ Voluntary context switches: 26877
53
+ Involuntary context switches: 384
54
+ Swaps: 0
55
+ File system inputs: 11489984
56
+ File system outputs: 267408
57
+ Socket messages sent: 0
58
+ Socket messages received: 0
59
+ Signals delivered: 0
60
+ Page size (bytes): 4096
61
+ Exit status: 0
62
+ JOB_EXIT 0 115s --design fewshot --dataset giroux2022 --draws 0,1,2,3,4 --threads 4
63
+ JOB_START 2026-10-02T15:28:44+09:00 --design pooled --dataset giroux2022
64
+ 15:28:45 giroux2022 pooled: 24 scored samples (11 case / 13 control), 5498 genes for the disease scores (65 excluded)
65
+ 15:28:59 split half: 238789 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.978, B 0.801, Mono 0.912, NK 0.894 (14.2 s; full aggregates rebuilt = cache)
66
+ 15:29:04 pseudo_full__cal: 36000 cells; r mean_cp10k T 0.426/0.257, B 0.221/0.121, Mono 0.353/0.243, NK 0.376/0.197 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (4 s)
67
+ 15:29:08 pseudo_full__raw: 36000 cells; r mean_cp10k T 0.649/0.599, B 0.232/0.181, Mono 0.252/0.230, NK 0.460/0.409 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (4 s)
68
+ 15:29:12 real_lora__raw: 36000 cells; r mean_cp10k T 0.706/0.626, B 0.333/0.271, Mono 0.450/0.357, NK 0.354/0.261 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (4 s)
69
+ 15:29:16 zs__cal: 36000 cells; r mean_cp10k T 0.391/0.279, B 0.139/0.077, Mono 0.239/0.150, NK 0.305/0.169 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (4 s)
70
+ 15:29:20 zs__pseudo: 36000 cells; r mean_cp10k T 0.601/0.494, B 0.295/0.207, Mono 0.304/0.258, NK 0.440/0.357 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (4 s)
71
+ 15:29:25 zs__raw: 36000 cells; r mean_cp10k T 0.490/0.351, B 0.178/0.085, Mono 0.338/0.238, NK 0.330/0.219 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (5 s)
72
+ 15:29:33 limma: 76 jobs in 9 s (0 not ok)
73
+ 15:29:33 unit pooled of giroux2022 -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/pooled in 48.5 s; reproduction PASS
74
+ Command being timed: "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python tools/contrast_extra.py --design pooled --dataset giroux2022 --threads 4"
75
+ User time (seconds): 33.45
76
+ System time (seconds): 11.98
77
+ Percent of CPU this job got: 92%
78
+ Elapsed (wall clock) time (h:mm:ss or m:ss): 0:49.17
79
+ Average shared text size (kbytes): 0
80
+ Average unshared data size (kbytes): 0
81
+ Average stack size (kbytes): 0
82
+ Average total size (kbytes): 0
83
+ Maximum resident set size (kbytes): 3900608
84
+ Average resident set size (kbytes): 0
85
+ Major (requiring I/O) page faults: 120
86
+ Minor (reclaiming a frame) page faults: 779101
87
+ Voluntary context switches: 21501
88
+ Involuntary context switches: 106
89
+ Swaps: 0
90
+ File system inputs: 10527832
91
+ File system outputs: 117968
92
+ Socket messages sent: 0
93
+ Socket messages received: 0
94
+ Signals delivered: 0
95
+ Page size (bytes): 4096
96
+ Exit status: 0
97
+ JOB_EXIT 0 49s --design pooled --dataset giroux2022 --threads 4
98
+ JOB_START 2026-10-02T15:29:33+09:00 --design fewshot --dataset ji2025_chili --draws 0,1,2,3,4
99
+ 15:29:34 ji2025_chili fewshot_n5/draw0: 25 scored samples (14 case / 11 control), 5752 genes for the disease scores
100
+ 15:29:37 split half: 86341 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.968, B 0.686, Mono 0.945, NK 0.855 (2.3 s; full aggregates rebuilt = cache)
101
+ 15:29:41 zs_raw: 37500 cells; r mean_cp10k T 0.207/0.205, B -0.055/-0.041, Mono 0.230/0.196, NK 0.028/0.002 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (5 s)
102
+ 15:29:47 zs_pseudo: 37500 cells; r mean_cp10k T 0.358/0.424, B 0.052/0.085, Mono 0.250/0.163, NK 0.076/0.057 (Pearson/Spearman); repro PASS (max |d| 6.9e-17) (6 s)
103
+ 15:29:52 zs_cal: 37500 cells; r mean_cp10k T 0.211/0.204, B -0.027/-0.050, Mono 0.174/0.135, NK 0.096/0.124 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (5 s)
104
+ 15:29:57 lora5: 37500 cells; r mean_cp10k T 0.484/0.484, B 0.243/0.255, Mono 0.485/0.381, NK 0.336/0.315 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (5 s)
105
+ 15:30:00 scsemi5: 37500 cells; r mean_cp10k T 0.121/0.076, B -0.088/-0.065, Mono 0.099/0.050, NK 0.041/0.073 (Pearson/Spearman); repro PASS (max |d| 7.6e-17) (3 s)
106
+ 15:30:08 limma: 68 jobs in 7 s (0 not ok)
107
+ 15:30:08 unit fewshot_n5/draw0 of ji2025_chili -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw0 in 33.9 s; reproduction PASS
108
+ 15:30:08 ji2025_chili fewshot_n5/draw1: 26 scored samples (15 case / 11 control), 5752 genes for the disease scores
109
+ 15:30:10 split half: 102036 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.970, B 0.757, Mono 0.952, NK 0.858 (2.3 s; full aggregates rebuilt = cache)
110
+ 15:30:11 zs_raw: 39000 cells; r mean_cp10k T 0.091/0.092, B -0.085/-0.059, Mono 0.189/0.155, NK -0.047/-0.074 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (1 s)
111
+ 15:30:12 zs_pseudo: 39000 cells; r mean_cp10k T 0.161/0.236, B 0.084/0.085, Mono 0.310/0.236, NK 0.028/-0.021 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (1 s)
112
+ 15:30:17 zs_cal: 39000 cells; r mean_cp10k T 0.051/0.004, B -0.077/-0.069, Mono 0.188/0.126, NK 0.052/0.011 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (5 s)
113
+ 15:30:24 lora5: 39000 cells; r mean_cp10k T 0.333/0.315, B 0.048/0.028, Mono 0.544/0.371, NK 0.178/0.122 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (7 s)
114
+ 15:30:28 scsemi5: 39000 cells; r mean_cp10k T 0.103/-0.038, B 0.045/-0.036, Mono 0.383/0.240, NK 0.190/0.095 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (4 s)
115
+ 15:30:36 limma: 68 jobs in 8 s (0 not ok)
116
+ 15:30:36 unit fewshot_n5/draw1 of ji2025_chili -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw1 in 28.0 s; reproduction PASS
117
+ 15:30:36 ji2025_chili fewshot_n5/draw2: 26 scored samples (16 case / 10 control), 5752 genes for the disease scores
118
+ 15:30:40 split half: 92081 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.974, B 0.748, Mono 0.960, NK 0.846 (3.5 s; full aggregates rebuilt = cache)
119
+ 15:30:41 zs_raw: 39000 cells; r mean_cp10k T 0.296/0.294, B 0.012/0.014, Mono 0.222/0.180, NK 0.016/-0.007 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (1 s)
120
+ 15:30:42 zs_pseudo: 39000 cells; r mean_cp10k T 0.384/0.456, B 0.078/0.069, Mono 0.251/0.152, NK 0.087/0.058 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (1 s)
121
+ 15:30:47 zs_cal: 39000 cells; r mean_cp10k T 0.404/0.400, B 0.105/0.114, Mono 0.232/0.195, NK 0.182/0.154 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (6 s)
122
+ 15:30:54 lora5: 39000 cells; r mean_cp10k T 0.475/0.484, B 0.174/0.139, Mono 0.286/0.207, NK 0.222/0.157 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (7 s)
123
+ 15:30:58 scsemi5: 39000 cells; r mean_cp10k T 0.210/0.213, B 0.185/0.135, Mono 0.189/0.044, NK 0.143/0.195 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (4 s)
124
+ 15:31:05 limma: 68 jobs in 7 s (0 not ok)
125
+ 15:31:05 unit fewshot_n5/draw2 of ji2025_chili -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw2 in 29.3 s; reproduction PASS
126
+ 15:31:05 ji2025_chili fewshot_n5/draw3: 25 scored samples (15 case / 10 control), 5752 genes for the disease scores
127
+ 15:31:08 split half: 91198 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.959, B 0.732, Mono 0.948, NK 0.802 (2.2 s; full aggregates rebuilt = cache)
128
+ 15:31:08 zs_raw: 37500 cells; r mean_cp10k T 0.283/0.286, B -0.048/-0.023, Mono 0.195/0.149, NK -0.002/-0.015 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (1 s)
129
+ 15:31:10 zs_pseudo: 37500 cells; r mean_cp10k T 0.187/0.294, B 0.014/0.031, Mono 0.229/0.131, NK 0.127/0.075 (Pearson/Spearman); repro PASS (max |d| 6.9e-17) (1 s)
130
+ 15:31:14 zs_cal: 37500 cells; r mean_cp10k T 0.425/0.448, B 0.125/0.114, Mono 0.207/0.154, NK 0.169/0.160 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (5 s)
131
+ 15:31:19 lora5: 37500 cells; r mean_cp10k T 0.517/0.540, B 0.279/0.224, Mono 0.552/0.328, NK 0.416/0.346 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (5 s)
132
+ 15:31:22 scsemi5: 37500 cells; r mean_cp10k T 0.305/0.267, B 0.249/0.139, Mono 0.293/0.163, NK 0.166/0.190 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (3 s)
133
+ 15:31:30 limma: 68 jobs in 8 s (0 not ok)
134
+ 15:31:30 unit fewshot_n5/draw3 of ji2025_chili -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw3 in 25.0 s; reproduction PASS
135
+ 15:31:30 ji2025_chili fewshot_n5/draw4: 24 scored samples (14 case / 10 control), 5752 genes for the disease scores
136
+ 15:31:33 split half: 82346 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.962, B 0.790, Mono 0.956, NK 0.835 (2.2 s; full aggregates rebuilt = cache)
137
+ 15:31:33 zs_raw: 36000 cells; r mean_cp10k T 0.169/0.173, B -0.136/-0.086, Mono 0.195/0.141, NK -0.028/-0.046 (Pearson/Spearman); repro PASS (max |d| 6.9e-17) (1 s)
138
+ 15:31:35 zs_pseudo: 36000 cells; r mean_cp10k T 0.405/0.449, B 0.076/0.041, Mono 0.313/0.211, NK 0.070/0.008 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (1 s)
139
+ 15:31:39 zs_cal: 36000 cells; r mean_cp10k T 0.150/0.090, B -0.061/-0.065, Mono 0.148/0.119, NK 0.044/0.042 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (4 s)
140
+ 15:31:44 lora5: 36000 cells; r mean_cp10k T 0.539/0.529, B -0.136/-0.021, Mono 0.426/0.299, NK 0.261/0.227 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (5 s)
141
+ 15:31:47 scsemi5: 36000 cells; r mean_cp10k T 0.133/-0.019, B -0.072/-0.014, Mono 0.290/0.114, NK 0.071/0.027 (Pearson/Spearman); repro PASS (max |d| 8.9e-17) (3 s)
142
+ 15:31:54 limma: 68 jobs in 7 s (0 not ok)
143
+ 15:31:54 unit fewshot_n5/draw4 of ji2025_chili -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/fewshot_n5/draw4 in 23.9 s; reproduction PASS
144
+ Command being timed: "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python tools/contrast_extra.py --design fewshot --dataset ji2025_chili --draws 0,1,2,3,4 --threads 4"
145
+ User time (seconds): 119.15
146
+ System time (seconds): 14.42
147
+ Percent of CPU this job got: 94%
148
+ Elapsed (wall clock) time (h:mm:ss or m:ss): 2:20.86
149
+ Average shared text size (kbytes): 0
150
+ Average unshared data size (kbytes): 0
151
+ Average stack size (kbytes): 0
152
+ Average total size (kbytes): 0
153
+ Maximum resident set size (kbytes): 2685600
154
+ Average resident set size (kbytes): 0
155
+ Major (requiring I/O) page faults: 1
156
+ Minor (reclaiming a frame) page faults: 2329233
157
+ Voluntary context switches: 38544
158
+ Involuntary context switches: 3375
159
+ Swaps: 0
160
+ File system inputs: 19178552
161
+ File system outputs: 566424
162
+ Socket messages sent: 0
163
+ Socket messages received: 0
164
+ Signals delivered: 0
165
+ Page size (bytes): 4096
166
+ Exit status: 0
167
+ JOB_EXIT 0 141s --design fewshot --dataset ji2025_chili --draws 0,1,2,3,4 --threads 4
168
+ JOB_START 2026-10-02T15:31:54+09:00 --design pooled --dataset ji2025_chili
169
+ 15:31:55 ji2025_chili pooled: 33 scored samples (18 case / 15 control), 5752 genes for the disease scores
170
+ 15:31:58 split half: 119162 observed cells of the 4 types, 5 seeds; mean r(A,B) T 0.970, B 0.782, Mono 0.962, NK 0.860 (2.5 s; full aggregates rebuilt = cache)
171
+ 15:32:02 pseudo_full__cal: 49500 cells; r mean_cp10k T 0.417/0.363, B 0.094/0.092, Mono 0.352/0.187, NK 0.118/0.106 (Pearson/Spearman); repro PASS (max |d| 9.0e-17) (5 s)
172
+ 15:32:07 pseudo_full__raw: 49500 cells; r mean_cp10k T 0.256/0.179, B -0.028/-0.011, Mono 0.345/0.250, NK 0.040/0.015 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (5 s)
173
+ 15:32:13 real_lora__raw: 49500 cells; r mean_cp10k T 0.478/0.428, B 0.238/0.171, Mono 0.788/0.604, NK 0.413/0.310 (Pearson/Spearman); repro PASS (max |d| 8.3e-17) (6 s)
174
+ 15:32:19 zs__cal: 49500 cells; r mean_cp10k T 0.228/0.201, B 0.004/0.007, Mono 0.210/0.136, NK 0.126/0.112 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (6 s)
175
+ 15:32:24 zs__pseudo: 49500 cells; r mean_cp10k T 0.278/0.360, B -0.061/-0.077, Mono 0.317/0.205, NK 0.031/-0.019 (Pearson/Spearman); repro PASS (max |d| 9.7e-17) (6 s)
176
+ 15:32:30 zs__raw: 49500 cells; r mean_cp10k T 0.175/0.166, B -0.076/-0.039, Mono 0.216/0.160, NK 0.019/-0.013 (Pearson/Spearman); repro PASS (max |d| 8.7e-17) (6 s)
177
+ 15:32:43 limma: 76 jobs in 14 s (0 not ok)
178
+ 15:32:44 unit pooled of ji2025_chili -> /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/pooled in 48.6 s; reproduction PASS
179
+ Command being timed: "/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python tools/contrast_extra.py --design pooled --dataset ji2025_chili --threads 4"
180
+ User time (seconds): 39.39
181
+ System time (seconds): 4.48
182
+ Percent of CPU this job got: 88%
183
+ Elapsed (wall clock) time (h:mm:ss or m:ss): 0:49.38
184
+ Average shared text size (kbytes): 0
185
+ Average unshared data size (kbytes): 0
186
+ Average stack size (kbytes): 0
187
+ Average total size (kbytes): 0
188
+ Maximum resident set size (kbytes): 2820908
189
+ Average resident set size (kbytes): 0
190
+ Major (requiring I/O) page faults: 261
191
+ Minor (reclaiming a frame) page faults: 426675
192
+ Voluntary context switches: 27986
193
+ Involuntary context switches: 3320
194
+ Swaps: 0
195
+ File system inputs: 14037968
196
+ File system outputs: 153872
197
+ Socket messages sent: 0
198
+ Socket messages received: 0
199
+ Signals delivered: 0
200
+ Page size (bytes): 4096
201
+ Exit status: 0
202
+ JOB_EXIT 0 50s --design pooled --dataset ji2025_chili --threads 4
203
+ UNIT_EXIT 0
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/_logs/smoke_giroux_d0_20261002T152531.jobs ADDED
@@ -0,0 +1 @@
 
 
1
+ --design fewshot --dataset giroux2022 --draws 0