Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/adopted_legacy/status.json +11 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/assignment.json +874 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/geneset_feature_qc.json +36 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/inputs/inputs_manifest.json +0 -0
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/adopted_legacy/status.json
ADDED
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@@ -0,0 +1,11 @@
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| 1 |
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{
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"prepared": true,
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"n_reps": 5,
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"reps_pretrained": 5,
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"n_targets": 77,
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"targets_done": 77,
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"pretrain_complete": true,
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"infer_complete": true,
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"run_signature": "5ddd3f5c4f5cefe7ad557f4b95f2ef55bec236a89974bd1f6606b8bbfb0999be",
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| 10 |
+
"updated": "2026-09-29T10:26:54.120598+00:00"
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| 11 |
+
}
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/assignment.json
ADDED
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@@ -0,0 +1,874 @@
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|
| 1 |
+
{
|
| 2 |
+
"rule": "upstream representative_selection.update_membership: nearest representative by Euclidean distance in processed_bulkdata.obsm['X_pca'] (initsetup PCA of log1p CP10K real bulk)",
|
| 3 |
+
"n_pca_components": 81,
|
| 4 |
+
"bulk_row_order": [
|
| 5 |
+
"Abd-PS04",
|
| 6 |
+
"Abd-PS05",
|
| 7 |
+
"Abd-PS07",
|
| 8 |
+
"Abd-PS19",
|
| 9 |
+
"Abd-PS20",
|
| 10 |
+
"Abd-PS23",
|
| 11 |
+
"Abd-PS27",
|
| 12 |
+
"Abd-S102",
|
| 13 |
+
"Abd-S103",
|
| 14 |
+
"Abd-S120",
|
| 15 |
+
"Abd-S123",
|
| 16 |
+
"Abd-S156",
|
| 17 |
+
"Abd-S39",
|
| 18 |
+
"Abd-S42",
|
| 19 |
+
"Abd-S47",
|
| 20 |
+
"Abd-S51",
|
| 21 |
+
"Abd-S54",
|
| 22 |
+
"Abd-S57",
|
| 23 |
+
"Abd-S66",
|
| 24 |
+
"Abd-S79",
|
| 25 |
+
"Abd-S83",
|
| 26 |
+
"Abd-S98",
|
| 27 |
+
"HC01",
|
| 28 |
+
"HC05",
|
| 29 |
+
"HC07",
|
| 30 |
+
"HC09",
|
| 31 |
+
"HC12",
|
| 32 |
+
"HC13",
|
| 33 |
+
"HC16",
|
| 34 |
+
"IC10",
|
| 35 |
+
"IC15",
|
| 36 |
+
"IC16",
|
| 37 |
+
"IC19",
|
| 38 |
+
"IC22",
|
| 39 |
+
"IC23",
|
| 40 |
+
"PHC01",
|
| 41 |
+
"PHC02",
|
| 42 |
+
"PHC03",
|
| 43 |
+
"PHC05",
|
| 44 |
+
"PIC01",
|
| 45 |
+
"PIC02",
|
| 46 |
+
"PIC04",
|
| 47 |
+
"PIC05",
|
| 48 |
+
"Res-PS02",
|
| 49 |
+
"Res-PS03",
|
| 50 |
+
"Res-PS12",
|
| 51 |
+
"Res-PS16",
|
| 52 |
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"Res-PS21",
|
| 53 |
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"Res-PS22",
|
| 54 |
+
"Res-PS25",
|
| 55 |
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"Res-PS26",
|
| 56 |
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"Res-S10",
|
| 57 |
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"Res-S125",
|
| 58 |
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"Res-S127",
|
| 59 |
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"Res-S136",
|
| 60 |
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"Res-S139",
|
| 61 |
+
"Res-S146",
|
| 62 |
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"Res-S149",
|
| 63 |
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"Res-S150",
|
| 64 |
+
"Res-S164",
|
| 65 |
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"Res-S166",
|
| 66 |
+
"Res-S174",
|
| 67 |
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"Res-S177",
|
| 68 |
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"Res-S184",
|
| 69 |
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"Res-S19",
|
| 70 |
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"Res-S26",
|
| 71 |
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"Res-S40",
|
| 72 |
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"Res-S77",
|
| 73 |
+
"Res-S87",
|
| 74 |
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"Skin-S140",
|
| 75 |
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"Skin-S142",
|
| 76 |
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"Skin-S152",
|
| 77 |
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"Skin-S38",
|
| 78 |
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"Skin-S43",
|
| 79 |
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"Skin-S46",
|
| 80 |
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"Skin-S52",
|
| 81 |
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"Skin-S74",
|
| 82 |
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"Uri-S134",
|
| 83 |
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"Uri-S147",
|
| 84 |
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"Uri-S157",
|
| 85 |
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"Uri-S20",
|
| 86 |
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"Uri-S93"
|
| 87 |
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],
|
| 88 |
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"representative_indices": [
|
| 89 |
+
39,
|
| 90 |
+
62,
|
| 91 |
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76,
|
| 92 |
+
54,
|
| 93 |
+
67
|
| 94 |
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],
|
| 95 |
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"targets": {
|
| 96 |
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"Abd-PS04": {
|
| 97 |
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"representative": "Res-S136",
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| 98 |
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"distances": {
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| 99 |
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"PIC01": 33.88712274920087,
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| 100 |
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"Res-S177": 33.4976480085126,
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| 101 |
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"Skin-S74": 40.05891264735778,
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| 102 |
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"Res-S136": 20.018620573969855,
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| 103 |
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"Res-S77": 20.14141049108077
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| 104 |
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}
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| 105 |
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},
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| 106 |
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"Abd-PS05": {
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| 107 |
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"representative": "Res-S77",
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| 108 |
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"distances": {
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| 109 |
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"PIC01": 27.469611208393307,
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| 110 |
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"Res-S177": 25.677099107682555,
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| 111 |
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"Skin-S74": 31.199232716992128,
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| 112 |
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| 113 |
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"Res-S77": 20.525497817398488
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| 114 |
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}
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| 115 |
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},
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| 116 |
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"Abd-PS07": {
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| 117 |
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"representative": "Skin-S74",
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| 118 |
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| 119 |
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"PIC01": 25.591348138250034,
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| 120 |
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"Res-S177": 25.679704557548238,
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| 121 |
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"Skin-S74": 17.59144103085416,
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| 122 |
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"Res-S136": 31.091354659397094,
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| 123 |
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"Res-S77": 29.747508246792226
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| 124 |
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}
|
| 125 |
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},
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| 126 |
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"Abd-PS19": {
|
| 127 |
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"representative": "Res-S77",
|
| 128 |
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"distances": {
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| 129 |
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"PIC01": 23.077411587572655,
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| 130 |
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"Res-S177": 21.038589049401498,
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| 131 |
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"Skin-S74": 26.145791292419926,
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| 132 |
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"Res-S136": 20.197397373343126,
|
| 133 |
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"Res-S77": 16.079234601623863
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| 134 |
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}
|
| 135 |
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},
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| 136 |
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"Abd-PS20": {
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| 137 |
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"representative": "Res-S177",
|
| 138 |
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"distances": {
|
| 139 |
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"PIC01": 24.062654260472307,
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| 140 |
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"Res-S177": 20.055674192044496,
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| 141 |
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"Skin-S74": 31.893669907098978,
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| 142 |
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"Res-S136": 36.42123169451182,
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| 143 |
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"Res-S77": 32.73788935846551
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| 144 |
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}
|
| 145 |
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},
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| 146 |
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"Abd-PS23": {
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| 147 |
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"representative": "Res-S77",
|
| 148 |
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"distances": {
|
| 149 |
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"PIC01": 25.991549833154345,
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| 150 |
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"Res-S177": 25.808212312148534,
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| 151 |
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"Skin-S74": 32.362912057772036,
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| 152 |
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"Res-S136": 27.219027607157887,
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| 153 |
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"Res-S77": 19.036517210993992
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| 154 |
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}
|
| 155 |
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},
|
| 156 |
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"Abd-PS27": {
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| 157 |
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"representative": "PIC01",
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| 158 |
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"distances": {
|
| 159 |
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"PIC01": 20.560292257721514,
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| 160 |
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| 161 |
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| 162 |
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| 163 |
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"Res-S77": 23.347265563322786
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| 164 |
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}
|
| 165 |
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},
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| 166 |
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"Abd-S102": {
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| 167 |
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| 168 |
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| 169 |
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| 170 |
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| 171 |
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| 172 |
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| 173 |
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"Res-S77": 17.550673989077886
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| 174 |
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}
|
| 175 |
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},
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| 176 |
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"Abd-S103": {
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| 177 |
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| 178 |
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| 179 |
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"PIC01": 27.530303622102995,
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| 180 |
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| 181 |
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| 182 |
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| 183 |
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"Res-S77": 21.192003778126786
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| 184 |
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}
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| 185 |
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},
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| 186 |
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"Abd-S120": {
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| 187 |
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| 188 |
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"distances": {
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| 189 |
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"PIC01": 28.394888082674214,
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| 190 |
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| 191 |
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| 192 |
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| 193 |
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"Res-S77": 16.5972251050839
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| 194 |
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}
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| 195 |
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},
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| 196 |
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"Abd-S123": {
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| 197 |
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| 198 |
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| 199 |
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| 200 |
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| 201 |
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| 202 |
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| 203 |
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"Res-S77": 18.529582708515168
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| 204 |
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}
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| 205 |
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},
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| 206 |
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| 207 |
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| 208 |
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| 209 |
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"PIC01": 32.332843891818776,
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| 210 |
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| 211 |
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| 212 |
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| 213 |
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"Res-S77": 21.150907796564557
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| 214 |
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}
|
| 215 |
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},
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| 216 |
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| 217 |
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| 218 |
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| 219 |
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| 220 |
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| 221 |
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| 222 |
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| 223 |
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| 224 |
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}
|
| 225 |
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},
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| 226 |
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"Abd-S42": {
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| 227 |
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|
| 228 |
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| 229 |
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"PIC01": 18.51250813997855,
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| 230 |
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| 231 |
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| 232 |
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| 233 |
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"Res-S77": 17.480239511014453
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| 234 |
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}
|
| 235 |
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},
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| 236 |
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| 237 |
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| 238 |
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| 239 |
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| 240 |
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| 241 |
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| 242 |
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|
| 243 |
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"Res-S77": 27.63613262788439
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| 244 |
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}
|
| 245 |
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},
|
| 246 |
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"Abd-S51": {
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| 247 |
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"representative": "Res-S136",
|
| 248 |
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"distances": {
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| 249 |
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"PIC01": 24.536127790530497,
|
| 250 |
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|
| 251 |
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| 252 |
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|
| 253 |
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"Res-S77": 17.752744161575393
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| 254 |
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}
|
| 255 |
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},
|
| 256 |
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| 257 |
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"representative": "Res-S177",
|
| 258 |
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| 259 |
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"PIC01": 18.947487680833326,
|
| 260 |
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|
| 261 |
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| 262 |
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|
| 263 |
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"Res-S77": 16.043406405998766
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| 264 |
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}
|
| 265 |
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},
|
| 266 |
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| 267 |
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|
| 268 |
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| 269 |
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|
| 270 |
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|
| 271 |
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| 272 |
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|
| 273 |
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"Res-S77": 14.938819464612278
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| 274 |
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}
|
| 275 |
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},
|
| 276 |
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|
| 277 |
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|
| 278 |
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|
| 279 |
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"PIC01": 25.176913300965456,
|
| 280 |
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|
| 281 |
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|
| 282 |
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|
| 283 |
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"Res-S77": 14.162677938668596
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| 284 |
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}
|
| 285 |
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},
|
| 286 |
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| 287 |
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|
| 288 |
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|
| 289 |
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|
| 290 |
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"Res-S177": 19.862947346762994,
|
| 291 |
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"Skin-S74": 31.813291613072842,
|
| 292 |
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"Res-S136": 14.807873693793992,
|
| 293 |
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"Res-S77": 14.438647418872689
|
| 294 |
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}
|
| 295 |
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},
|
| 296 |
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|
| 297 |
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|
| 298 |
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|
| 299 |
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|
| 300 |
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|
| 301 |
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|
| 302 |
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|
| 303 |
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"Res-S77": 18.71631921514865
|
| 304 |
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}
|
| 305 |
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},
|
| 306 |
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| 307 |
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|
| 308 |
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|
| 309 |
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"PIC01": 31.029938272057706,
|
| 310 |
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"Res-S177": 29.24164425235861,
|
| 311 |
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|
| 312 |
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"Res-S136": 17.6449361237379,
|
| 313 |
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"Res-S77": 15.878503169696339
|
| 314 |
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}
|
| 315 |
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},
|
| 316 |
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"HC01": {
|
| 317 |
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"representative": "Res-S177",
|
| 318 |
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"distances": {
|
| 319 |
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"PIC01": 19.093383592183443,
|
| 320 |
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"Res-S177": 14.677086126135343,
|
| 321 |
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"Skin-S74": 24.763121532083304,
|
| 322 |
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"Res-S136": 16.868803228566396,
|
| 323 |
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"Res-S77": 17.562416208541002
|
| 324 |
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}
|
| 325 |
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},
|
| 326 |
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"HC05": {
|
| 327 |
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"representative": "Res-S177",
|
| 328 |
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"distances": {
|
| 329 |
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"PIC01": 17.626205785708006,
|
| 330 |
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"Res-S177": 12.216771169767433,
|
| 331 |
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"Skin-S74": 19.958916749294385,
|
| 332 |
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"Res-S136": 23.691717829567164,
|
| 333 |
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"Res-S77": 22.850468028618355
|
| 334 |
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}
|
| 335 |
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},
|
| 336 |
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"HC07": {
|
| 337 |
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|
| 338 |
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|
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|
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/geneset_feature_qc.json
ADDED
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| 1 |
+
{
|
| 2 |
+
"run_signature": "514fc6c2563138d589d553f6d654fb14c1250cc022a6a5ee880d13b3a178382f",
|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
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| 17 |
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| 18 |
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|
| 19 |
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| 20 |
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| 21 |
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|
| 22 |
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},
|
| 23 |
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| 24 |
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|
| 25 |
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|
| 26 |
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| 27 |
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| 28 |
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|
| 29 |
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| 30 |
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|
| 31 |
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| 32 |
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|
| 33 |
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| 34 |
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|
| 35 |
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|
| 36 |
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}
|
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw2/inputs/inputs_manifest.json
ADDED
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