Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/data/ye2026_sepsis/AGGREGATES.json

@@ -0,0 +1,16 @@
+{
+ "dataset": "ye2026_sepsis",
+ "cells": 610713,
+ "samples": 85,
+ "states": 29,
+ "genes": 5959,
+ "scoring_genes": 5975,
+ "cells_full": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/cells_full.npz",
+ "cells_full_sha256": "0b3606b6ab70342eca37c2ac8068d86593774bb921f756db4295b5d1d0a33f3f",
+ "labels": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ye2026_sepsis/observed_labels/labels/labels.parquet",
+ "labels_sha256": "ab27c027a75b7cd47ec8267d4b33bfe41e8cb6ab64190a3592db1cffa2a73ea7",
+ "aggregates_sha256": "d38afdb00f5616ada109babfb6fc0f16bc37b33a434807d263d0163895e1f9de",
+ "tool_sha256": "1cd3befb81046a3968cb09c0bcc792f7b27d5d00cc9faf5bf691e7af6124139e",
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf",
+ "seconds": 16.9
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/data/ye2026_sepsis/AGGREGATES_full.json

@@ -0,0 +1,17 @@
+{
+ "dataset": "ye2026_sepsis",
+ "cells": 610713,
+ "samples": 85,
+ "states": 29,
+ "genes": 18787,
+ "scoring_genes": 5975,
+ "cells_full": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/cells_full.npz",
+ "cells_full_sha256": "0b3606b6ab70342eca37c2ac8068d86593774bb921f756db4295b5d1d0a33f3f",
+ "labels": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ye2026_sepsis/observed_labels/labels/labels.parquet",
+ "labels_sha256": "ab27c027a75b7cd47ec8267d4b33bfe41e8cb6ab64190a3592db1cffa2a73ea7",
+ "gene_mode": "full",
+ "aggregates_sha256": "1c866cbb8990359c870f46804e55cbae4a38cb82b5e0bf5f47bd9a552ada966a",
+ "tool_sha256": "d25459ce4b2ef7e3b72a62801b7f1b07373bbe8a58effadcd485629e18b727c1",
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875",
+ "seconds": 23.4
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/cv0/SPLIT.json

@@ -0,0 +1,62 @@
+{
+ "dataset": "giroux2022",
+ "kind": "cv",
+ "idx": 0,
+ "reference": [
+  "7085CA_d0",
+  "7085CA_d7",
+  "7085CA_d14",
+  "2AD75E_d0",
+  "2AD75E_d7",
+  "2AD75E_d14",
+  "180E1A_d0",
+  "180E1A_d7",
+  "180E1A_d14",
+  "82CCF5_d0",
+  "82CCF5_d7",
+  "82CCF5_d14",
+  "BAAF62_d0",
+  "BAAF62_d7",
+  "BAAF62_d14",
+  "0BF51C_d0",
+  "0BF51C_d7",
+  "0BF51C_d14",
+  "0B943B_d0",
+  "0B943B_d14"
+ ],
+ "mixture": [
+  "450905_d0",
+  "450905_d14",
+  "B85D75_d0",
+  "B85D75_d7"
+ ],
+ "run_json_check": true,
+ "n_train_rows": 18,
+ "n_inner_val_rows": 2,
+ "n_reference_samples": 20,
+ "n_mixture_samples": 4,
+ "reference_cells": 217160,
+ "states": 29,
+ "states_merged_minor": 0,
+ "types": [
+  "B cell",
+  "DC",
+  "Monocyte",
+  "NK cell",
+  "Other",
+  "T cell"
+ ],
+ "missing_types": [],
+ "bp_axis_genes": 5556,
+ "genes_kept": 5433,
+ "genes_dropped_not_bulk_valid": 0,
+ "genes_dropped_zero_reference": 123,
+ "aggregates_sha256": "9b80e097aafc8e9f46bba6166b50af98391afa05d8584acf7066a697762db5c7",
+ "files": {
+  "reference.tsv.gz": "7a960b6419841145ada53d4a3a5e3eaa29d47ee584075a61ecc04f4ff7cbba9c",
+  "state_types.tsv": "f94646fa3c1e5c609a2618ddfda80909503a3a563c019d3ddb703dfa364ebe49",
+  "mixture.tsv.gz": "6c84c51b54730089971212487a002749d7ad9e3b98f67b9ed867d321118c8274"
+ },
+ "tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/cv0/state_types.tsv

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+state	type	n_cells
+B cell|Effector B cell	B cell	2894
+B cell|Memory B cell	B cell	3442
+B cell|Naive B cell	B cell	6072
+B cell|Plasma cell	B cell	624
+B cell|Transitional B cell	B cell	2768
+DC|ASDC	DC	48
+DC|cDC1	DC	133
+DC|cDC2	DC	2489
+DC|pDC	DC	847
+Monocyte|CD14 monocyte	Monocyte	18658
+Monocyte|CD16 monocyte	Monocyte	6096
+Monocyte|Intermediate monocyte	Monocyte	14984
+NK cell|CD56bright NK cell	NK cell	2871
+NK cell|CD56dim NK cell	NK cell	17816
+NK cell|Proliferating NK cell	NK cell	5281
+Other|Erythrocyte	Other	4896
+Other|ILC	Other	1676
+Other|Platelet	Other	1592
+Other|Progenitor cell	Other	186
+T cell|CD8aa	T cell	6894
+T cell|DN T cell	T cell	11466
+T cell|MAIT	T cell	12611
+T cell|Memory CD4 T cell	T cell	19230
+T cell|Memory CD8 T cell	T cell	16189
+T cell|Naive CD4 T cell	T cell	20042
+T cell|Naive CD8 T cell	T cell	23171
+T cell|Proliferating T cell	T cell	1356
+T cell|Treg	T cell	5376
+T cell|gdT	T cell	7452