Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261001T145641Z-lora-rank-sweep-calibration-budget/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_r4/RUN.json +151 -0
- paper-releases/pbisc-diffusion/updates/20261001T145641Z-lora-rank-sweep-calibration-budget/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_r4/history.json +169 -0
- paper-releases/pbisc-diffusion/updates/20261001T145641Z-lora-rank-sweep-calibration-budget/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_r4_n20/RUN.json +121 -0
- paper-releases/pbisc-diffusion/updates/20261001T145641Z-lora-rank-sweep-calibration-budget/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_r4_n20/history.json +139 -0
paper-releases/pbisc-diffusion/updates/20261001T145641Z-lora-rank-sweep-calibration-budget/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_r4/RUN.json
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc_sdd.ft_intradataset.run.v1",
|
| 3 |
+
"source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
|
| 4 |
+
"source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
|
| 5 |
+
"dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis",
|
| 6 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/conditions_raw_fixed.npz",
|
| 7 |
+
"condition_npz_sha256": "ce8b61d7dcd3e62b9e63d52189cfb5bba881f87a661384277a7949a629231cb4",
|
| 8 |
+
"fold": 1,
|
| 9 |
+
"mode": "lora",
|
| 10 |
+
"trainable": {
|
| 11 |
+
"mode": "lora",
|
| 12 |
+
"lora_layers": [
|
| 13 |
+
"time_encoder.0",
|
| 14 |
+
"time_encoder.2",
|
| 15 |
+
"condition_encoder.0",
|
| 16 |
+
"condition_encoder.3",
|
| 17 |
+
"context_mixer.2",
|
| 18 |
+
"down_blocks.0.input_projection",
|
| 19 |
+
"down_blocks.0.context_projection.1",
|
| 20 |
+
"down_blocks.1.input_projection",
|
| 21 |
+
"down_blocks.1.context_projection.1",
|
| 22 |
+
"down_blocks.2.input_projection",
|
| 23 |
+
"down_blocks.2.context_projection.1",
|
| 24 |
+
"down_blocks.3.input_projection",
|
| 25 |
+
"down_blocks.3.context_projection.1",
|
| 26 |
+
"up_blocks.0.input_projection",
|
| 27 |
+
"up_blocks.0.context_projection.1",
|
| 28 |
+
"up_blocks.1.input_projection",
|
| 29 |
+
"up_blocks.1.context_projection.1",
|
| 30 |
+
"up_blocks.2.input_projection",
|
| 31 |
+
"up_blocks.2.context_projection.1",
|
| 32 |
+
"output_trunk.0",
|
| 33 |
+
"value_head",
|
| 34 |
+
"active_head"
|
| 35 |
+
],
|
| 36 |
+
"lora_rank": 4,
|
| 37 |
+
"lora_alpha": 4.0,
|
| 38 |
+
"n_trainable": 324056,
|
| 39 |
+
"n_total_base": 54185184,
|
| 40 |
+
"trainable_tensors": 44
|
| 41 |
+
},
|
| 42 |
+
"lr": 0.0005,
|
| 43 |
+
"warmup": 200,
|
| 44 |
+
"batch_size": 256,
|
| 45 |
+
"ema_decay": 0.999,
|
| 46 |
+
"max_steps": 20000,
|
| 47 |
+
"steps_run": 6750,
|
| 48 |
+
"eval_every": 250,
|
| 49 |
+
"patience": 8,
|
| 50 |
+
"train_subset": null,
|
| 51 |
+
"train_donors_file": null,
|
| 52 |
+
"fixed_steps": null,
|
| 53 |
+
"selected_step": 4750,
|
| 54 |
+
"selected_inner_val_loss": 0.1118783610207694,
|
| 55 |
+
"pretrained_inner_val_loss": 0.12158982934696334,
|
| 56 |
+
"train_rows": [
|
| 57 |
+
"Abd-PS04",
|
| 58 |
+
"Abd-PS05",
|
| 59 |
+
"Abd-PS19",
|
| 60 |
+
"Abd-PS20",
|
| 61 |
+
"Abd-PS23",
|
| 62 |
+
"Abd-PS27",
|
| 63 |
+
"Abd-S103",
|
| 64 |
+
"Abd-S123",
|
| 65 |
+
"Abd-S42",
|
| 66 |
+
"Abd-S47",
|
| 67 |
+
"Abd-S51",
|
| 68 |
+
"Abd-S54",
|
| 69 |
+
"Abd-S66",
|
| 70 |
+
"Abd-S79",
|
| 71 |
+
"Abd-S83",
|
| 72 |
+
"Abd-S98",
|
| 73 |
+
"HC07",
|
| 74 |
+
"HC09",
|
| 75 |
+
"HC12",
|
| 76 |
+
"HC16",
|
| 77 |
+
"IC10",
|
| 78 |
+
"IC15",
|
| 79 |
+
"IC19",
|
| 80 |
+
"IC23",
|
| 81 |
+
"PHC02",
|
| 82 |
+
"PHC03",
|
| 83 |
+
"PHC05",
|
| 84 |
+
"PIC01",
|
| 85 |
+
"PIC02",
|
| 86 |
+
"PIC04",
|
| 87 |
+
"Res-PS02",
|
| 88 |
+
"Res-PS03",
|
| 89 |
+
"Res-PS16",
|
| 90 |
+
"Res-PS25",
|
| 91 |
+
"Res-PS26",
|
| 92 |
+
"Res-S125",
|
| 93 |
+
"Res-S127",
|
| 94 |
+
"Res-S136",
|
| 95 |
+
"Res-S139",
|
| 96 |
+
"Res-S146",
|
| 97 |
+
"Res-S149",
|
| 98 |
+
"Res-S150",
|
| 99 |
+
"Res-S164",
|
| 100 |
+
"Res-S166",
|
| 101 |
+
"Res-S174",
|
| 102 |
+
"Res-S177",
|
| 103 |
+
"Res-S26",
|
| 104 |
+
"Res-S40",
|
| 105 |
+
"Res-S77",
|
| 106 |
+
"Res-S87",
|
| 107 |
+
"Skin-S140",
|
| 108 |
+
"Skin-S152",
|
| 109 |
+
"Skin-S38",
|
| 110 |
+
"Skin-S43",
|
| 111 |
+
"Skin-S74",
|
| 112 |
+
"Uri-S134",
|
| 113 |
+
"Uri-S147",
|
| 114 |
+
"Uri-S20"
|
| 115 |
+
],
|
| 116 |
+
"inner_val_rows": [
|
| 117 |
+
"Abd-S102",
|
| 118 |
+
"Abd-S39",
|
| 119 |
+
"Abd-S57",
|
| 120 |
+
"HC01",
|
| 121 |
+
"IC22",
|
| 122 |
+
"Res-PS21",
|
| 123 |
+
"Uri-S93"
|
| 124 |
+
],
|
| 125 |
+
"test_rows_never_loaded_for_training": [
|
| 126 |
+
"Abd-PS07",
|
| 127 |
+
"Abd-S120",
|
| 128 |
+
"Abd-S156",
|
| 129 |
+
"HC05",
|
| 130 |
+
"HC13",
|
| 131 |
+
"IC16",
|
| 132 |
+
"PHC01",
|
| 133 |
+
"PIC05",
|
| 134 |
+
"Res-PS12",
|
| 135 |
+
"Res-PS22",
|
| 136 |
+
"Res-S10",
|
| 137 |
+
"Res-S184",
|
| 138 |
+
"Res-S19",
|
| 139 |
+
"Skin-S142",
|
| 140 |
+
"Skin-S46",
|
| 141 |
+
"Skin-S52",
|
| 142 |
+
"Uri-S157"
|
| 143 |
+
],
|
| 144 |
+
"max_abs_weight_change": 0.5777350664138794,
|
| 145 |
+
"n_tensors_changed": 22,
|
| 146 |
+
"seed": 20260927,
|
| 147 |
+
"wall_seconds": 238.7,
|
| 148 |
+
"written_utc": "2026-10-01T09:35:58.615987+00:00",
|
| 149 |
+
"checkpoint_sha256": "d2082513bca679d482ece3b20be2d3e55fd9280a68b6231cce3d2f5feae74cbb",
|
| 150 |
+
"reload_forward_max_abs_diff": 0.0
|
| 151 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261001T145641Z-lora-rank-sweep-calibration-budget/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_r4/history.json
ADDED
|
@@ -0,0 +1,169 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"step": 0,
|
| 4 |
+
"inner_val_loss": 0.12158982934696334,
|
| 5 |
+
"train_loss": null
|
| 6 |
+
},
|
| 7 |
+
{
|
| 8 |
+
"step": 250,
|
| 9 |
+
"inner_val_loss": 0.12105410865374974,
|
| 10 |
+
"train_loss": 0.11575796777009964,
|
| 11 |
+
"sec": 9.0
|
| 12 |
+
},
|
| 13 |
+
{
|
| 14 |
+
"step": 500,
|
| 15 |
+
"inner_val_loss": 0.11920081132224628,
|
| 16 |
+
"train_loss": 0.11223616823554039,
|
| 17 |
+
"sec": 17.8
|
| 18 |
+
},
|
| 19 |
+
{
|
| 20 |
+
"step": 750,
|
| 21 |
+
"inner_val_loss": 0.11692301290375846,
|
| 22 |
+
"train_loss": 0.11163840636610985,
|
| 23 |
+
"sec": 26.6
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"step": 1000,
|
| 27 |
+
"inner_val_loss": 0.11499111301132611,
|
| 28 |
+
"train_loss": 0.11163749659061432,
|
| 29 |
+
"sec": 35.2
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"step": 1250,
|
| 33 |
+
"inner_val_loss": 0.1137561361704554,
|
| 34 |
+
"train_loss": 0.11187987712025642,
|
| 35 |
+
"sec": 43.9
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"step": 1500,
|
| 39 |
+
"inner_val_loss": 0.1130413327898298,
|
| 40 |
+
"train_loss": 0.11166136255860329,
|
| 41 |
+
"sec": 52.7
|
| 42 |
+
},
|
| 43 |
+
{
|
| 44 |
+
"step": 1750,
|
| 45 |
+
"inner_val_loss": 0.11262497784835952,
|
| 46 |
+
"train_loss": 0.11160015079379082,
|
| 47 |
+
"sec": 61.6
|
| 48 |
+
},
|
| 49 |
+
{
|
| 50 |
+
"step": 2000,
|
| 51 |
+
"inner_val_loss": 0.11237480491399765,
|
| 52 |
+
"train_loss": 0.11128047654032708,
|
| 53 |
+
"sec": 70.4
|
| 54 |
+
},
|
| 55 |
+
{
|
| 56 |
+
"step": 2250,
|
| 57 |
+
"inner_val_loss": 0.1122129378574235,
|
| 58 |
+
"train_loss": 0.11176008334755898,
|
| 59 |
+
"sec": 79.1
|
| 60 |
+
},
|
| 61 |
+
{
|
| 62 |
+
"step": 2500,
|
| 63 |
+
"inner_val_loss": 0.11210613963859421,
|
| 64 |
+
"train_loss": 0.11149347957968712,
|
| 65 |
+
"sec": 87.9
|
| 66 |
+
},
|
| 67 |
+
{
|
| 68 |
+
"step": 2750,
|
| 69 |
+
"inner_val_loss": 0.11202908307313919,
|
| 70 |
+
"train_loss": 0.11123762702941895,
|
| 71 |
+
"sec": 96.6
|
| 72 |
+
},
|
| 73 |
+
{
|
| 74 |
+
"step": 3000,
|
| 75 |
+
"inner_val_loss": 0.1119754926434585,
|
| 76 |
+
"train_loss": 0.11176344567537308,
|
| 77 |
+
"sec": 105.2
|
| 78 |
+
},
|
| 79 |
+
{
|
| 80 |
+
"step": 3250,
|
| 81 |
+
"inner_val_loss": 0.11194358287113053,
|
| 82 |
+
"train_loss": 0.11117379304766654,
|
| 83 |
+
"sec": 113.8
|
| 84 |
+
},
|
| 85 |
+
{
|
| 86 |
+
"step": 3500,
|
| 87 |
+
"inner_val_loss": 0.11192158556410245,
|
| 88 |
+
"train_loss": 0.11132070589065551,
|
| 89 |
+
"sec": 122.9
|
| 90 |
+
},
|
| 91 |
+
{
|
| 92 |
+
"step": 3750,
|
| 93 |
+
"inner_val_loss": 0.1119060745196683,
|
| 94 |
+
"train_loss": 0.1112499749660492,
|
| 95 |
+
"sec": 131.9
|
| 96 |
+
},
|
| 97 |
+
{
|
| 98 |
+
"step": 4000,
|
| 99 |
+
"inner_val_loss": 0.1118970736861229,
|
| 100 |
+
"train_loss": 0.11129197785258294,
|
| 101 |
+
"sec": 140.6
|
| 102 |
+
},
|
| 103 |
+
{
|
| 104 |
+
"step": 4250,
|
| 105 |
+
"inner_val_loss": 0.11189305941973414,
|
| 106 |
+
"train_loss": 0.11151008239388466,
|
| 107 |
+
"sec": 149.4
|
| 108 |
+
},
|
| 109 |
+
{
|
| 110 |
+
"step": 4500,
|
| 111 |
+
"inner_val_loss": 0.11188545716660363,
|
| 112 |
+
"train_loss": 0.11151254555583,
|
| 113 |
+
"sec": 158.2
|
| 114 |
+
},
|
| 115 |
+
{
|
| 116 |
+
"step": 4750,
|
| 117 |
+
"inner_val_loss": 0.1118783610207694,
|
| 118 |
+
"train_loss": 0.11136356735229493,
|
| 119 |
+
"sec": 166.9
|
| 120 |
+
},
|
| 121 |
+
{
|
| 122 |
+
"step": 5000,
|
| 123 |
+
"inner_val_loss": 0.11188114434480667,
|
| 124 |
+
"train_loss": 0.11139211949706078,
|
| 125 |
+
"sec": 175.7
|
| 126 |
+
},
|
| 127 |
+
{
|
| 128 |
+
"step": 5250,
|
| 129 |
+
"inner_val_loss": 0.111885238971029,
|
| 130 |
+
"train_loss": 0.11131393334269524,
|
| 131 |
+
"sec": 184.4
|
| 132 |
+
},
|
| 133 |
+
{
|
| 134 |
+
"step": 5500,
|
| 135 |
+
"inner_val_loss": 0.11188930698803493,
|
| 136 |
+
"train_loss": 0.1111615924835205,
|
| 137 |
+
"sec": 193.0
|
| 138 |
+
},
|
| 139 |
+
{
|
| 140 |
+
"step": 5750,
|
| 141 |
+
"inner_val_loss": 0.11188767211777824,
|
| 142 |
+
"train_loss": 0.11123855912685394,
|
| 143 |
+
"sec": 201.9
|
| 144 |
+
},
|
| 145 |
+
{
|
| 146 |
+
"step": 6000,
|
| 147 |
+
"inner_val_loss": 0.11189311849219459,
|
| 148 |
+
"train_loss": 0.11135905036330224,
|
| 149 |
+
"sec": 210.7
|
| 150 |
+
},
|
| 151 |
+
{
|
| 152 |
+
"step": 6250,
|
| 153 |
+
"inner_val_loss": 0.11189665592142514,
|
| 154 |
+
"train_loss": 0.11093546715378762,
|
| 155 |
+
"sec": 219.4
|
| 156 |
+
},
|
| 157 |
+
{
|
| 158 |
+
"step": 6500,
|
| 159 |
+
"inner_val_loss": 0.11190849649054664,
|
| 160 |
+
"train_loss": 0.1108680053949356,
|
| 161 |
+
"sec": 228.2
|
| 162 |
+
},
|
| 163 |
+
{
|
| 164 |
+
"step": 6750,
|
| 165 |
+
"inner_val_loss": 0.11190963802593094,
|
| 166 |
+
"train_loss": 0.11106232258677483,
|
| 167 |
+
"sec": 237.1
|
| 168 |
+
}
|
| 169 |
+
]
|
paper-releases/pbisc-diffusion/updates/20261001T145641Z-lora-rank-sweep-calibration-budget/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_r4_n20/RUN.json
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc_sdd.ft_intradataset.run.v1",
|
| 3 |
+
"source_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/runs/f01_6k_1x_seed20260627/checkpoint_epoch_016.pt",
|
| 4 |
+
"source_checkpoint_sha256": "8c7cd0e83e2bc19fe03dfcbc084919a1e2f61be8cc8bc12f4caf543dfda91633",
|
| 5 |
+
"dataset_dir": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis",
|
| 6 |
+
"condition_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/data/ye2026_sepsis/conditions_raw_fixed.npz",
|
| 7 |
+
"condition_npz_sha256": "ce8b61d7dcd3e62b9e63d52189cfb5bba881f87a661384277a7949a629231cb4",
|
| 8 |
+
"fold": 1,
|
| 9 |
+
"mode": "lora",
|
| 10 |
+
"trainable": {
|
| 11 |
+
"mode": "lora",
|
| 12 |
+
"lora_layers": [
|
| 13 |
+
"time_encoder.0",
|
| 14 |
+
"time_encoder.2",
|
| 15 |
+
"condition_encoder.0",
|
| 16 |
+
"condition_encoder.3",
|
| 17 |
+
"context_mixer.2",
|
| 18 |
+
"down_blocks.0.input_projection",
|
| 19 |
+
"down_blocks.0.context_projection.1",
|
| 20 |
+
"down_blocks.1.input_projection",
|
| 21 |
+
"down_blocks.1.context_projection.1",
|
| 22 |
+
"down_blocks.2.input_projection",
|
| 23 |
+
"down_blocks.2.context_projection.1",
|
| 24 |
+
"down_blocks.3.input_projection",
|
| 25 |
+
"down_blocks.3.context_projection.1",
|
| 26 |
+
"up_blocks.0.input_projection",
|
| 27 |
+
"up_blocks.0.context_projection.1",
|
| 28 |
+
"up_blocks.1.input_projection",
|
| 29 |
+
"up_blocks.1.context_projection.1",
|
| 30 |
+
"up_blocks.2.input_projection",
|
| 31 |
+
"up_blocks.2.context_projection.1",
|
| 32 |
+
"output_trunk.0",
|
| 33 |
+
"value_head",
|
| 34 |
+
"active_head"
|
| 35 |
+
],
|
| 36 |
+
"lora_rank": 4,
|
| 37 |
+
"lora_alpha": 4.0,
|
| 38 |
+
"n_trainable": 324056,
|
| 39 |
+
"n_total_base": 54185184,
|
| 40 |
+
"trainable_tensors": 44
|
| 41 |
+
},
|
| 42 |
+
"lr": 0.0005,
|
| 43 |
+
"warmup": 200,
|
| 44 |
+
"batch_size": 256,
|
| 45 |
+
"ema_decay": 0.999,
|
| 46 |
+
"max_steps": 20000,
|
| 47 |
+
"steps_run": 5500,
|
| 48 |
+
"eval_every": 250,
|
| 49 |
+
"patience": 8,
|
| 50 |
+
"train_subset": {
|
| 51 |
+
"train_n": 20,
|
| 52 |
+
"subset_seed": 1001,
|
| 53 |
+
"strata_regex": "sepsis",
|
| 54 |
+
"allocation": {
|
| 55 |
+
"False": 5,
|
| 56 |
+
"True": 15
|
| 57 |
+
}
|
| 58 |
+
},
|
| 59 |
+
"train_donors_file": null,
|
| 60 |
+
"fixed_steps": null,
|
| 61 |
+
"selected_step": 3500,
|
| 62 |
+
"selected_inner_val_loss": 0.11195417174271174,
|
| 63 |
+
"pretrained_inner_val_loss": 0.12158982934696334,
|
| 64 |
+
"train_rows": [
|
| 65 |
+
"Abd-PS05",
|
| 66 |
+
"Abd-S123",
|
| 67 |
+
"Abd-S42",
|
| 68 |
+
"Abd-S51",
|
| 69 |
+
"Abd-S66",
|
| 70 |
+
"Abd-S79",
|
| 71 |
+
"IC15",
|
| 72 |
+
"IC23",
|
| 73 |
+
"PIC01",
|
| 74 |
+
"PIC02",
|
| 75 |
+
"PIC04",
|
| 76 |
+
"Res-PS02",
|
| 77 |
+
"Res-PS03",
|
| 78 |
+
"Res-PS16",
|
| 79 |
+
"Res-S125",
|
| 80 |
+
"Res-S136",
|
| 81 |
+
"Res-S139",
|
| 82 |
+
"Res-S166",
|
| 83 |
+
"Res-S177",
|
| 84 |
+
"Res-S40"
|
| 85 |
+
],
|
| 86 |
+
"inner_val_rows": [
|
| 87 |
+
"Abd-S102",
|
| 88 |
+
"Abd-S39",
|
| 89 |
+
"Abd-S57",
|
| 90 |
+
"HC01",
|
| 91 |
+
"IC22",
|
| 92 |
+
"Res-PS21",
|
| 93 |
+
"Uri-S93"
|
| 94 |
+
],
|
| 95 |
+
"test_rows_never_loaded_for_training": [
|
| 96 |
+
"Abd-PS07",
|
| 97 |
+
"Abd-S120",
|
| 98 |
+
"Abd-S156",
|
| 99 |
+
"HC05",
|
| 100 |
+
"HC13",
|
| 101 |
+
"IC16",
|
| 102 |
+
"PHC01",
|
| 103 |
+
"PIC05",
|
| 104 |
+
"Res-PS12",
|
| 105 |
+
"Res-PS22",
|
| 106 |
+
"Res-S10",
|
| 107 |
+
"Res-S184",
|
| 108 |
+
"Res-S19",
|
| 109 |
+
"Skin-S142",
|
| 110 |
+
"Skin-S46",
|
| 111 |
+
"Skin-S52",
|
| 112 |
+
"Uri-S157"
|
| 113 |
+
],
|
| 114 |
+
"max_abs_weight_change": 0.35842639207839966,
|
| 115 |
+
"n_tensors_changed": 22,
|
| 116 |
+
"seed": 20260927,
|
| 117 |
+
"wall_seconds": 195.6,
|
| 118 |
+
"written_utc": "2026-10-01T08:46:37.079554+00:00",
|
| 119 |
+
"checkpoint_sha256": "f4b6d2ab94b20900313b86c7008721d98e6113cac6f41723e967fc5786ad06ef",
|
| 120 |
+
"reload_forward_max_abs_diff": 0.0
|
| 121 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261001T145641Z-lora-rank-sweep-calibration-budget/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/runs/ye2026_sepsis/fold1/lora_r4_n20/history.json
ADDED
|
@@ -0,0 +1,139 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"step": 0,
|
| 4 |
+
"inner_val_loss": 0.12158982934696334,
|
| 5 |
+
"train_loss": null
|
| 6 |
+
},
|
| 7 |
+
{
|
| 8 |
+
"step": 250,
|
| 9 |
+
"inner_val_loss": 0.12106678422008242,
|
| 10 |
+
"train_loss": 0.11724855774641037,
|
| 11 |
+
"sec": 9.2
|
| 12 |
+
},
|
| 13 |
+
{
|
| 14 |
+
"step": 500,
|
| 15 |
+
"inner_val_loss": 0.11928630300930568,
|
| 16 |
+
"train_loss": 0.11344813337922097,
|
| 17 |
+
"sec": 18.2
|
| 18 |
+
},
|
| 19 |
+
{
|
| 20 |
+
"step": 750,
|
| 21 |
+
"inner_val_loss": 0.11712226803813662,
|
| 22 |
+
"train_loss": 0.1128794626891613,
|
| 23 |
+
"sec": 27.0
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"step": 1000,
|
| 27 |
+
"inner_val_loss": 0.11526291125587054,
|
| 28 |
+
"train_loss": 0.1129139389693737,
|
| 29 |
+
"sec": 35.6
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"step": 1250,
|
| 33 |
+
"inner_val_loss": 0.11398770713380404,
|
| 34 |
+
"train_loss": 0.11303591436147689,
|
| 35 |
+
"sec": 44.3
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"step": 1500,
|
| 39 |
+
"inner_val_loss": 0.11321365886500903,
|
| 40 |
+
"train_loss": 0.11282617455720902,
|
| 41 |
+
"sec": 53.0
|
| 42 |
+
},
|
| 43 |
+
{
|
| 44 |
+
"step": 1750,
|
| 45 |
+
"inner_val_loss": 0.11272087746432849,
|
| 46 |
+
"train_loss": 0.11237754014134407,
|
| 47 |
+
"sec": 61.9
|
| 48 |
+
},
|
| 49 |
+
{
|
| 50 |
+
"step": 2000,
|
| 51 |
+
"inner_val_loss": 0.11241684854030609,
|
| 52 |
+
"train_loss": 0.11234402692317963,
|
| 53 |
+
"sec": 70.8
|
| 54 |
+
},
|
| 55 |
+
{
|
| 56 |
+
"step": 2250,
|
| 57 |
+
"inner_val_loss": 0.11221732571721077,
|
| 58 |
+
"train_loss": 0.11302731025218964,
|
| 59 |
+
"sec": 79.6
|
| 60 |
+
},
|
| 61 |
+
{
|
| 62 |
+
"step": 2500,
|
| 63 |
+
"inner_val_loss": 0.11209626549056598,
|
| 64 |
+
"train_loss": 0.11248183238506317,
|
| 65 |
+
"sec": 88.4
|
| 66 |
+
},
|
| 67 |
+
{
|
| 68 |
+
"step": 2750,
|
| 69 |
+
"inner_val_loss": 0.11201464916978564,
|
| 70 |
+
"train_loss": 0.11229715937376022,
|
| 71 |
+
"sec": 97.1
|
| 72 |
+
},
|
| 73 |
+
{
|
| 74 |
+
"step": 3000,
|
| 75 |
+
"inner_val_loss": 0.1119794850902898,
|
| 76 |
+
"train_loss": 0.11255749025940895,
|
| 77 |
+
"sec": 105.7
|
| 78 |
+
},
|
| 79 |
+
{
|
| 80 |
+
"step": 3250,
|
| 81 |
+
"inner_val_loss": 0.11195604396717888,
|
| 82 |
+
"train_loss": 0.11248636820912361,
|
| 83 |
+
"sec": 114.3
|
| 84 |
+
},
|
| 85 |
+
{
|
| 86 |
+
"step": 3500,
|
| 87 |
+
"inner_val_loss": 0.11195417174271174,
|
| 88 |
+
"train_loss": 0.11207142826914787,
|
| 89 |
+
"sec": 123.2
|
| 90 |
+
},
|
| 91 |
+
{
|
| 92 |
+
"step": 3750,
|
| 93 |
+
"inner_val_loss": 0.1119594116296087,
|
| 94 |
+
"train_loss": 0.11226908785104751,
|
| 95 |
+
"sec": 132.1
|
| 96 |
+
},
|
| 97 |
+
{
|
| 98 |
+
"step": 4000,
|
| 99 |
+
"inner_val_loss": 0.1119743963437421,
|
| 100 |
+
"train_loss": 0.11216612860560417,
|
| 101 |
+
"sec": 141.1
|
| 102 |
+
},
|
| 103 |
+
{
|
| 104 |
+
"step": 4250,
|
| 105 |
+
"inner_val_loss": 0.11198425186531884,
|
| 106 |
+
"train_loss": 0.11244111049175262,
|
| 107 |
+
"sec": 150.2
|
| 108 |
+
},
|
| 109 |
+
{
|
| 110 |
+
"step": 4500,
|
| 111 |
+
"inner_val_loss": 0.11200270429253578,
|
| 112 |
+
"train_loss": 0.11240934437513352,
|
| 113 |
+
"sec": 159.2
|
| 114 |
+
},
|
| 115 |
+
{
|
| 116 |
+
"step": 4750,
|
| 117 |
+
"inner_val_loss": 0.11201307071106774,
|
| 118 |
+
"train_loss": 0.1121291823387146,
|
| 119 |
+
"sec": 168.0
|
| 120 |
+
},
|
| 121 |
+
{
|
| 122 |
+
"step": 5000,
|
| 123 |
+
"inner_val_loss": 0.11202984569328171,
|
| 124 |
+
"train_loss": 0.1123135495185852,
|
| 125 |
+
"sec": 176.8
|
| 126 |
+
},
|
| 127 |
+
{
|
| 128 |
+
"step": 5250,
|
| 129 |
+
"inner_val_loss": 0.11205119267106056,
|
| 130 |
+
"train_loss": 0.1120992069542408,
|
| 131 |
+
"sec": 185.5
|
| 132 |
+
},
|
| 133 |
+
{
|
| 134 |
+
"step": 5500,
|
| 135 |
+
"inner_val_loss": 0.11206563455717904,
|
| 136 |
+
"train_loss": 0.11217805668711663,
|
| 137 |
+
"sec": 194.1
|
| 138 |
+
}
|
| 139 |
+
]
|