Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw3/adopted_legacy/shards/Uri-S20.json +29 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw3/adopted_legacy/shards/Uri-S93.json +29 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw3/adopted_legacy/status.json +11 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw3/assignment.json +874 -0
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw3/adopted_legacy/shards/Uri-S20.json
ADDED
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@@ -0,0 +1,29 @@
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| 1 |
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{
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| 2 |
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"sample_id": "Uri-S20",
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| 3 |
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"representative": "Abd-S57",
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| 4 |
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"rep_bulk_index": 17,
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| 5 |
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"target_bulk_index": 80,
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| 6 |
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"seed": 20261007,
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| 7 |
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"elapsed_seconds": 281.1771982590144,
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| 8 |
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"device": "cuda:0",
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| 9 |
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"run_signature": "2092030ec9432cb4e6ddd015f295e74d1a589262ed2447d5e744410a7d45af4c",
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"code_signature": "c9c98d6c067ec5f940c93d997ed5d08d8d0af74c06f1c8748c158bf1a2915c9d",
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| 11 |
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"shape": [
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| 12 |
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14291,
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| 13 |
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5975
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| 14 |
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],
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| 15 |
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"dtype": "float32",
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| 16 |
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"nnz": 1896602,
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| 17 |
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"zero_fraction": 0.9777886131921983,
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| 18 |
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"zero_rows": 0,
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| 19 |
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"mean_library_normalized": 8075.6640625,
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| 20 |
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"matrix_unit": "normalized_expression",
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| 21 |
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"upstream_npy": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/fewshot_n5/draw3/scsemi_project/inferreddata/Abd-S57_to_Uri-S20.npy",
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| 22 |
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"upstream_npy_sha256": "06a81430bb8a8d658cf365723482ac5ed274f5eb83e8e4f78c08d1c7304d4700",
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| 23 |
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"shard": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/fewshot_n5/draw3/shards/Uri-S20.npz",
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| 24 |
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"shard_sha256": "5d5e0e4d2db38bc096b156241c3ed70a92ae74b8067ef4de9f3dde386b84cbf6",
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| 25 |
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"lossless_csr_verified": true,
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| 26 |
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"upstream_npy_removed": true,
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| 27 |
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"created_at": "2026-09-29T18:32:34.035187+00:00",
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| 28 |
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"complete": true
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| 29 |
+
}
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw3/adopted_legacy/shards/Uri-S93.json
ADDED
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{
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| 2 |
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"sample_id": "Uri-S93",
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| 3 |
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"representative": "Abd-S57",
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| 4 |
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"rep_bulk_index": 17,
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| 5 |
+
"target_bulk_index": 81,
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| 6 |
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"seed": 20261008,
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| 7 |
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"elapsed_seconds": 273.34922787500545,
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| 8 |
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"device": "cuda:0",
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| 9 |
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"run_signature": "2092030ec9432cb4e6ddd015f295e74d1a589262ed2447d5e744410a7d45af4c",
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| 10 |
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"code_signature": "c9c98d6c067ec5f940c93d997ed5d08d8d0af74c06f1c8748c158bf1a2915c9d",
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| 11 |
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"shape": [
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| 12 |
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14291,
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| 13 |
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5975
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| 14 |
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],
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| 15 |
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"dtype": "float32",
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| 16 |
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"nnz": 1769729,
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| 17 |
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"zero_fraction": 0.9792744416783363,
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| 18 |
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"zero_rows": 0,
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| 19 |
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"mean_library_normalized": 7320.072265625,
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| 20 |
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"matrix_unit": "normalized_expression",
|
| 21 |
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"upstream_npy": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/fewshot_n5/draw3/scsemi_project/inferreddata/Abd-S57_to_Uri-S93.npy",
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| 22 |
+
"upstream_npy_sha256": "8e3eba8c7ebfdeb977c98c5a463b81a74e4da147ad310b043c92d53f3f94d2cf",
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| 23 |
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"shard": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scsemi/work/ye2026_sepsis/fewshot_n5/draw3/shards/Uri-S93.npz",
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| 24 |
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"shard_sha256": "3a8aea128177ff74998e05470d0728c085898d9e6ff8f38bd69ba6dc3ab3cceb",
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| 25 |
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"lossless_csr_verified": true,
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| 26 |
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"upstream_npy_removed": true,
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| 27 |
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"created_at": "2026-09-29T18:37:08.015263+00:00",
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| 28 |
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"complete": true
|
| 29 |
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}
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw3/adopted_legacy/status.json
ADDED
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{
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"prepared": true,
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| 3 |
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"n_reps": 5,
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| 4 |
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"reps_pretrained": 5,
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"n_targets": 77,
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| 6 |
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"targets_done": 77,
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| 7 |
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"pretrain_complete": true,
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| 8 |
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"infer_complete": true,
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| 9 |
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"run_signature": "2092030ec9432cb4e6ddd015f295e74d1a589262ed2447d5e744410a7d45af4c",
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| 10 |
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"updated": "2026-09-29T18:37:08.154865+00:00"
|
| 11 |
+
}
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paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/scsemi/ye2026_sepsis/disease/draw3/assignment.json
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|
| 1 |
+
{
|
| 2 |
+
"rule": "upstream representative_selection.update_membership: nearest representative by Euclidean distance in processed_bulkdata.obsm['X_pca'] (initsetup PCA of log1p CP10K real bulk)",
|
| 3 |
+
"n_pca_components": 81,
|
| 4 |
+
"bulk_row_order": [
|
| 5 |
+
"Abd-PS04",
|
| 6 |
+
"Abd-PS05",
|
| 7 |
+
"Abd-PS07",
|
| 8 |
+
"Abd-PS19",
|
| 9 |
+
"Abd-PS20",
|
| 10 |
+
"Abd-PS23",
|
| 11 |
+
"Abd-PS27",
|
| 12 |
+
"Abd-S102",
|
| 13 |
+
"Abd-S103",
|
| 14 |
+
"Abd-S120",
|
| 15 |
+
"Abd-S123",
|
| 16 |
+
"Abd-S156",
|
| 17 |
+
"Abd-S39",
|
| 18 |
+
"Abd-S42",
|
| 19 |
+
"Abd-S47",
|
| 20 |
+
"Abd-S51",
|
| 21 |
+
"Abd-S54",
|
| 22 |
+
"Abd-S57",
|
| 23 |
+
"Abd-S66",
|
| 24 |
+
"Abd-S79",
|
| 25 |
+
"Abd-S83",
|
| 26 |
+
"Abd-S98",
|
| 27 |
+
"HC01",
|
| 28 |
+
"HC05",
|
| 29 |
+
"HC07",
|
| 30 |
+
"HC09",
|
| 31 |
+
"HC12",
|
| 32 |
+
"HC13",
|
| 33 |
+
"HC16",
|
| 34 |
+
"IC10",
|
| 35 |
+
"IC15",
|
| 36 |
+
"IC16",
|
| 37 |
+
"IC19",
|
| 38 |
+
"IC22",
|
| 39 |
+
"IC23",
|
| 40 |
+
"PHC01",
|
| 41 |
+
"PHC02",
|
| 42 |
+
"PHC03",
|
| 43 |
+
"PHC05",
|
| 44 |
+
"PIC01",
|
| 45 |
+
"PIC02",
|
| 46 |
+
"PIC04",
|
| 47 |
+
"PIC05",
|
| 48 |
+
"Res-PS02",
|
| 49 |
+
"Res-PS03",
|
| 50 |
+
"Res-PS12",
|
| 51 |
+
"Res-PS16",
|
| 52 |
+
"Res-PS21",
|
| 53 |
+
"Res-PS22",
|
| 54 |
+
"Res-PS25",
|
| 55 |
+
"Res-PS26",
|
| 56 |
+
"Res-S10",
|
| 57 |
+
"Res-S125",
|
| 58 |
+
"Res-S127",
|
| 59 |
+
"Res-S136",
|
| 60 |
+
"Res-S139",
|
| 61 |
+
"Res-S146",
|
| 62 |
+
"Res-S149",
|
| 63 |
+
"Res-S150",
|
| 64 |
+
"Res-S164",
|
| 65 |
+
"Res-S166",
|
| 66 |
+
"Res-S174",
|
| 67 |
+
"Res-S177",
|
| 68 |
+
"Res-S184",
|
| 69 |
+
"Res-S19",
|
| 70 |
+
"Res-S26",
|
| 71 |
+
"Res-S40",
|
| 72 |
+
"Res-S77",
|
| 73 |
+
"Res-S87",
|
| 74 |
+
"Skin-S140",
|
| 75 |
+
"Skin-S142",
|
| 76 |
+
"Skin-S152",
|
| 77 |
+
"Skin-S38",
|
| 78 |
+
"Skin-S43",
|
| 79 |
+
"Skin-S46",
|
| 80 |
+
"Skin-S52",
|
| 81 |
+
"Skin-S74",
|
| 82 |
+
"Uri-S134",
|
| 83 |
+
"Uri-S147",
|
| 84 |
+
"Uri-S157",
|
| 85 |
+
"Uri-S20",
|
| 86 |
+
"Uri-S93"
|
| 87 |
+
],
|
| 88 |
+
"representative_indices": [
|
| 89 |
+
38,
|
| 90 |
+
55,
|
| 91 |
+
61,
|
| 92 |
+
70,
|
| 93 |
+
17
|
| 94 |
+
],
|
| 95 |
+
"targets": {
|
| 96 |
+
"Abd-PS04": {
|
| 97 |
+
"representative": "Skin-S142",
|
| 98 |
+
"distances": {
|
| 99 |
+
"PHC05": 29.145071814268967,
|
| 100 |
+
"Res-S139": 20.475829226636012,
|
| 101 |
+
"Res-S174": 28.18078944712167,
|
| 102 |
+
"Skin-S142": 16.85253274129754,
|
| 103 |
+
"Abd-S57": 20.269400802595445
|
| 104 |
+
}
|
| 105 |
+
},
|
| 106 |
+
"Abd-PS05": {
|
| 107 |
+
"representative": "Res-S174",
|
| 108 |
+
"distances": {
|
| 109 |
+
"PHC05": 24.184598325750677,
|
| 110 |
+
"Res-S139": 24.828221358151982,
|
| 111 |
+
"Res-S174": 22.165454666477004,
|
| 112 |
+
"Skin-S142": 25.974363045908017,
|
| 113 |
+
"Abd-S57": 23.385568051116397
|
| 114 |
+
}
|
| 115 |
+
},
|
| 116 |
+
"Abd-PS07": {
|
| 117 |
+
"representative": "Res-S174",
|
| 118 |
+
"distances": {
|
| 119 |
+
"PHC05": 24.52275892031789,
|
| 120 |
+
"Res-S139": 25.239675774360265,
|
| 121 |
+
"Res-S174": 24.350805882920003,
|
| 122 |
+
"Skin-S142": 31.457560584474884,
|
| 123 |
+
"Abd-S57": 26.53048642496412
|
| 124 |
+
}
|
| 125 |
+
},
|
| 126 |
+
"Abd-PS19": {
|
| 127 |
+
"representative": "Abd-S57",
|
| 128 |
+
"distances": {
|
| 129 |
+
"PHC05": 17.756284792780875,
|
| 130 |
+
"Res-S139": 16.535569116028928,
|
| 131 |
+
"Res-S174": 16.74593758384334,
|
| 132 |
+
"Skin-S142": 18.880725914995768,
|
| 133 |
+
"Abd-S57": 14.803123330329619
|
| 134 |
+
}
|
| 135 |
+
},
|
| 136 |
+
"Abd-PS20": {
|
| 137 |
+
"representative": "PHC05",
|
| 138 |
+
"distances": {
|
| 139 |
+
"PHC05": 25.757070438279616,
|
| 140 |
+
"Res-S139": 37.863781403237965,
|
| 141 |
+
"Res-S174": 28.11338553186984,
|
| 142 |
+
"Skin-S142": 37.19310090714196,
|
| 143 |
+
"Abd-S57": 37.34845670881998
|
| 144 |
+
}
|
| 145 |
+
},
|
| 146 |
+
"Abd-PS23": {
|
| 147 |
+
"representative": "Res-S174",
|
| 148 |
+
"distances": {
|
| 149 |
+
"PHC05": 24.48144067038475,
|
| 150 |
+
"Res-S139": 25.539377100214505,
|
| 151 |
+
"Res-S174": 21.5101275525283,
|
| 152 |
+
"Skin-S142": 25.569430571190452,
|
| 153 |
+
"Abd-S57": 22.60618596898213
|
| 154 |
+
}
|
| 155 |
+
},
|
| 156 |
+
"Abd-PS27": {
|
| 157 |
+
"representative": "Res-S174",
|
| 158 |
+
"distances": {
|
| 159 |
+
"PHC05": 21.417995516334678,
|
| 160 |
+
"Res-S139": 27.25742346632474,
|
| 161 |
+
"Res-S174": 20.856467083170465,
|
| 162 |
+
"Skin-S142": 28.09719133701264,
|
| 163 |
+
"Abd-S57": 23.43096388648803
|
| 164 |
+
}
|
| 165 |
+
},
|
| 166 |
+
"Abd-S102": {
|
| 167 |
+
"representative": "Abd-S57",
|
| 168 |
+
"distances": {
|
| 169 |
+
"PHC05": 29.015111348973498,
|
| 170 |
+
"Res-S139": 24.29904495967782,
|
| 171 |
+
"Res-S174": 24.89832329797185,
|
| 172 |
+
"Skin-S142": 23.0639794777693,
|
| 173 |
+
"Abd-S57": 19.897489049856055
|
| 174 |
+
}
|
| 175 |
+
},
|
| 176 |
+
"Abd-S103": {
|
| 177 |
+
"representative": "Res-S174",
|
| 178 |
+
"distances": {
|
| 179 |
+
"PHC05": 24.662940274715737,
|
| 180 |
+
"Res-S139": 25.859840660983707,
|
| 181 |
+
"Res-S174": 20.59299822093576,
|
| 182 |
+
"Skin-S142": 28.1044235388709,
|
| 183 |
+
"Abd-S57": 21.532273722896807
|
| 184 |
+
}
|
| 185 |
+
},
|
| 186 |
+
"Abd-S120": {
|
| 187 |
+
"representative": "Abd-S57",
|
| 188 |
+
"distances": {
|
| 189 |
+
"PHC05": 22.282245081448036,
|
| 190 |
+
"Res-S139": 17.84685209462652,
|
| 191 |
+
"Res-S174": 21.32471827309088,
|
| 192 |
+
"Skin-S142": 15.769579236657382,
|
| 193 |
+
"Abd-S57": 15.388777455704266
|
| 194 |
+
}
|
| 195 |
+
},
|
| 196 |
+
"Abd-S123": {
|
| 197 |
+
"representative": "Abd-S57",
|
| 198 |
+
"distances": {
|
| 199 |
+
"PHC05": 26.825319091292325,
|
| 200 |
+
"Res-S139": 20.80099492482466,
|
| 201 |
+
"Res-S174": 23.331725513596993,
|
| 202 |
+
"Skin-S142": 20.482771958996423,
|
| 203 |
+
"Abd-S57": 17.584652502449433
|
| 204 |
+
}
|
| 205 |
+
},
|
| 206 |
+
"Abd-S156": {
|
| 207 |
+
"representative": "Abd-S57",
|
| 208 |
+
"distances": {
|
| 209 |
+
"PHC05": 28.86060922313299,
|
| 210 |
+
"Res-S139": 25.99871807973679,
|
| 211 |
+
"Res-S174": 25.69612467197935,
|
| 212 |
+
"Skin-S142": 22.337604703614446,
|
| 213 |
+
"Abd-S57": 22.08303065624155
|
| 214 |
+
}
|
| 215 |
+
},
|
| 216 |
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"Abd-S39": {
|
| 217 |
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"representative": "Abd-S57",
|
| 218 |
+
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