Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/1a2d18c90fcd8178/donor_deg_summary.csv +26 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/2d86f64d985b27d2/ye2026_sepsis-disease-draw3.json +628 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/4f329b51b1079256/support.json +254 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/54a3f98cd29e2a46/support.json +193 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/1a2d18c90fcd8178/donor_deg_summary.csv
ADDED
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@@ -0,0 +1,26 @@
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| 1 |
+
arm,celltype,status,observed_status,generated_status,n_case_donors_observed,n_control_donors_observed,n_case_donors_generated,n_control_donors_generated,method_observed,method_generated,reason_observed,reason_generated,reason_fit,reason_population,top50_overlap_count,observed_top50_size,generated_top50_size
|
| 2 |
+
lora,T cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,21,50,50
|
| 3 |
+
lora,B cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,1,50,50
|
| 4 |
+
lora,Monocyte,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,18,50,50
|
| 5 |
+
lora,NK cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,16,50,50
|
| 6 |
+
lora,DC,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,19,50,50
|
| 7 |
+
pairedcal,T cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,15,50,50
|
| 8 |
+
pairedcal,B cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,1,50,50
|
| 9 |
+
pairedcal,Monocyte,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,17,50,50
|
| 10 |
+
pairedcal,NK cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,16,50,50
|
| 11 |
+
pairedcal,DC,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,14,50,50
|
| 12 |
+
scsemi,T cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,8,50,50
|
| 13 |
+
scsemi,B cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,1,50,50
|
| 14 |
+
scsemi,Monocyte,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,9,50,50
|
| 15 |
+
scsemi,NK cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,4,50,50
|
| 16 |
+
scsemi,DC,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,9,50,50
|
| 17 |
+
raw,T cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,19,50,50
|
| 18 |
+
raw,B cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,1,50,50
|
| 19 |
+
raw,Monocyte,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,16,50,50
|
| 20 |
+
raw,NK cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,15,50,50
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| 21 |
+
raw,DC,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,14,50,50
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| 22 |
+
refcal,T cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,12,50,50
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| 23 |
+
refcal,B cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,0,50,50
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| 24 |
+
refcal,Monocyte,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,8,50,50
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| 25 |
+
refcal,NK cell,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,7,50,50
|
| 26 |
+
refcal,DC,ok,ok,ok,32,31,32,31,edgeR_TMM_limma_voom_duplicateCorrelation,edgeR_TMM_limma_voom_duplicateCorrelation,,,,,7,50,50
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/2d86f64d985b27d2/ye2026_sepsis-disease-draw3.json
ADDED
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@@ -0,0 +1,628 @@
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/4f329b51b1079256/support.json
ADDED
|
@@ -0,0 +1,254 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "ye2026_sepsis",
|
| 4 |
+
"design": "disease_existing_draw",
|
| 5 |
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"unit": "draw3_n5",
|
| 6 |
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"n_pairs": 5,
|
| 7 |
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"train_sample_ids": [
|
| 8 |
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"PHC05",
|
| 9 |
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"Res-S139",
|
| 10 |
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"Res-S174",
|
| 11 |
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"Skin-S142",
|
| 12 |
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"Abd-S57"
|
| 13 |
+
],
|
| 14 |
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"train_donor_ids": [
|
| 15 |
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"PHC05",
|
| 16 |
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"Res-S139",
|
| 17 |
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"Res-S174",
|
| 18 |
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"Skin-S142",
|
| 19 |
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"Abd-S57"
|
| 20 |
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],
|
| 21 |
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"test_sample_ids": [
|
| 22 |
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"Abd-PS04",
|
| 23 |
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"Abd-PS05",
|
| 24 |
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"Abd-PS07",
|
| 25 |
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"Abd-PS19",
|
| 26 |
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"Abd-PS20",
|
| 27 |
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"Abd-PS23",
|
| 28 |
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"Abd-PS27",
|
| 29 |
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"Abd-S102",
|
| 30 |
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"Abd-S103",
|
| 31 |
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"Abd-S120",
|
| 32 |
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"Abd-S123",
|
| 33 |
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"Abd-S156",
|
| 34 |
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"Abd-S39",
|
| 35 |
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"Abd-S42",
|
| 36 |
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"Abd-S47",
|
| 37 |
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"Abd-S51",
|
| 38 |
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"Abd-S54",
|
| 39 |
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"Abd-S66",
|
| 40 |
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"Abd-S79",
|
| 41 |
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"Abd-S83",
|
| 42 |
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"Abd-S98",
|
| 43 |
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"HC01",
|
| 44 |
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"HC05",
|
| 45 |
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"HC07",
|
| 46 |
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"HC09",
|
| 47 |
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"HC12",
|
| 48 |
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"HC13",
|
| 49 |
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"HC16",
|
| 50 |
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"IC10",
|
| 51 |
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"IC15",
|
| 52 |
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"IC16",
|
| 53 |
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"IC19",
|
| 54 |
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"IC22",
|
| 55 |
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"IC23",
|
| 56 |
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"PHC01",
|
| 57 |
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"PHC02",
|
| 58 |
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"PHC03",
|
| 59 |
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"PIC01",
|
| 60 |
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"PIC02",
|
| 61 |
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"PIC04",
|
| 62 |
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"PIC05",
|
| 63 |
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"Res-PS02",
|
| 64 |
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"Res-PS03",
|
| 65 |
+
"Res-PS12",
|
| 66 |
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"Res-PS16",
|
| 67 |
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"Res-PS21",
|
| 68 |
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"Res-PS22",
|
| 69 |
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"Res-PS25",
|
| 70 |
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"Res-PS26",
|
| 71 |
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"Res-S10",
|
| 72 |
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"Res-S125",
|
| 73 |
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"Res-S127",
|
| 74 |
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"Res-S136",
|
| 75 |
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"Res-S146",
|
| 76 |
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"Res-S149",
|
| 77 |
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"Res-S150",
|
| 78 |
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"Res-S164",
|
| 79 |
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"Res-S166",
|
| 80 |
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"Res-S177",
|
| 81 |
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"Res-S184",
|
| 82 |
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"Res-S19",
|
| 83 |
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"Res-S26",
|
| 84 |
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"Res-S40",
|
| 85 |
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"Res-S77",
|
| 86 |
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"Res-S87",
|
| 87 |
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"Skin-S140",
|
| 88 |
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"Skin-S152",
|
| 89 |
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"Skin-S38",
|
| 90 |
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"Skin-S43",
|
| 91 |
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"Skin-S46",
|
| 92 |
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"Skin-S52",
|
| 93 |
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"Skin-S74",
|
| 94 |
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"Uri-S134",
|
| 95 |
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"Uri-S147",
|
| 96 |
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"Uri-S157",
|
| 97 |
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"Uri-S20",
|
| 98 |
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"Uri-S93"
|
| 99 |
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],
|
| 100 |
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"test_donor_ids": [
|
| 101 |
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"Abd-PS04",
|
| 102 |
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"Abd-PS05",
|
| 103 |
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"Abd-PS07",
|
| 104 |
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"Abd-PS19",
|
| 105 |
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"Abd-PS20",
|
| 106 |
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"Abd-PS23",
|
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"Abd-PS27",
|
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"Abd-S102",
|
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"Abd-S103",
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"Abd-S120",
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"Abd-S42",
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"Abd-S51",
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"Abd-S54",
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"Abd-S66",
|
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"Abd-S79",
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| 120 |
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"Abd-S83",
|
| 121 |
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"Abd-S98",
|
| 122 |
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"HC01",
|
| 123 |
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"HC05",
|
| 124 |
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"HC07",
|
| 125 |
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"HC09",
|
| 126 |
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"HC12",
|
| 127 |
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"HC13",
|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 178 |
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],
|
| 179 |
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|
| 180 |
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|
| 181 |
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"selection_audit": [
|
| 182 |
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{
|
| 183 |
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|
| 184 |
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|
| 185 |
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"selected_sample_id": "PHC05",
|
| 186 |
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|
| 187 |
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{
|
| 188 |
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|
| 189 |
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|
| 190 |
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|
| 191 |
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|
| 192 |
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|
| 193 |
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}
|
| 194 |
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]
|
| 195 |
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},
|
| 196 |
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{
|
| 197 |
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"donor_id": "Res-S139",
|
| 198 |
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"assigned_stratum": true,
|
| 199 |
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"selected_sample_id": "Res-S139",
|
| 200 |
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"candidates": [
|
| 201 |
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{
|
| 202 |
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"sample_id": "Res-S139",
|
| 203 |
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"time_value": 0.0,
|
| 204 |
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"time_raw": "none (single sample per donor)",
|
| 205 |
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"time_field": "timepoint",
|
| 206 |
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"group": "adult_sepsis"
|
| 207 |
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}
|
| 208 |
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]
|
| 209 |
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},
|
| 210 |
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{
|
| 211 |
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|
| 212 |
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"assigned_stratum": true,
|
| 213 |
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"selected_sample_id": "Res-S174",
|
| 214 |
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|
| 215 |
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{
|
| 216 |
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"sample_id": "Res-S174",
|
| 217 |
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"time_value": 0.0,
|
| 218 |
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"time_raw": "none (single sample per donor)",
|
| 219 |
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"time_field": "timepoint",
|
| 220 |
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"group": "adult_sepsis"
|
| 221 |
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}
|
| 222 |
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]
|
| 223 |
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},
|
| 224 |
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{
|
| 225 |
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"donor_id": "Skin-S142",
|
| 226 |
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"assigned_stratum": true,
|
| 227 |
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"selected_sample_id": "Skin-S142",
|
| 228 |
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"candidates": [
|
| 229 |
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{
|
| 230 |
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"sample_id": "Skin-S142",
|
| 231 |
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"time_value": 0.0,
|
| 232 |
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"time_raw": "none (single sample per donor)",
|
| 233 |
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"time_field": "timepoint",
|
| 234 |
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"group": "adult_sepsis"
|
| 235 |
+
}
|
| 236 |
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]
|
| 237 |
+
},
|
| 238 |
+
{
|
| 239 |
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"donor_id": "Abd-S57",
|
| 240 |
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"assigned_stratum": true,
|
| 241 |
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"selected_sample_id": "Abd-S57",
|
| 242 |
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"candidates": [
|
| 243 |
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{
|
| 244 |
+
"sample_id": "Abd-S57",
|
| 245 |
+
"time_value": 0.0,
|
| 246 |
+
"time_raw": "none (single sample per donor)",
|
| 247 |
+
"time_field": "timepoint",
|
| 248 |
+
"group": "adult_sepsis"
|
| 249 |
+
}
|
| 250 |
+
]
|
| 251 |
+
}
|
| 252 |
+
],
|
| 253 |
+
"sha256": "ab2ccffd21a8efa2b23ed420fbcdf06d9ac3c8045649e69b11388a9af0d13cc4"
|
| 254 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/54a3f98cd29e2a46/support.json
ADDED
|
@@ -0,0 +1,193 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
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"cohort": "giroux2022",
|
| 4 |
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"design": "disease_existing_draw",
|
| 5 |
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"unit": "draw4_n5",
|
| 6 |
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"n_pairs": 5,
|
| 7 |
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"train_sample_ids": [
|
| 8 |
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"BAAF62_d0",
|
| 9 |
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"0B943B_d0",
|
| 10 |
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"2AD75E_d0",
|
| 11 |
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"82CCF5_d0",
|
| 12 |
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"0BF51C_d0"
|
| 13 |
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],
|
| 14 |
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"train_donor_ids": [
|
| 15 |
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"BAAF62",
|
| 16 |
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"0B943B",
|
| 17 |
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"2AD75E",
|
| 18 |
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"82CCF5",
|
| 19 |
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"0BF51C"
|
| 20 |
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],
|
| 21 |
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"test_sample_ids": [
|
| 22 |
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"450905_d0",
|
| 23 |
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"450905_d14",
|
| 24 |
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"7085CA_d0",
|
| 25 |
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"7085CA_d7",
|
| 26 |
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"7085CA_d14",
|
| 27 |
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"B85D75_d0",
|
| 28 |
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"B85D75_d7",
|
| 29 |
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"180E1A_d0",
|
| 30 |
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"180E1A_d7",
|
| 31 |
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"180E1A_d14"
|
| 32 |
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],
|
| 33 |
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"test_donor_ids": [
|
| 34 |
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"450905",
|
| 35 |
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"450905",
|
| 36 |
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|
| 37 |
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|
| 38 |
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"7085CA",
|
| 39 |
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"B85D75",
|
| 40 |
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"B85D75",
|
| 41 |
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"180E1A",
|
| 42 |
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"180E1A",
|
| 43 |
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|
| 44 |
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],
|
| 45 |
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"excluded_sample_ids": [
|
| 46 |
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"0B943B_d14",
|
| 47 |
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"0BF51C_d14",
|
| 48 |
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"0BF51C_d7",
|
| 49 |
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"2AD75E_d14",
|
| 50 |
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"2AD75E_d7",
|
| 51 |
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"82CCF5_d14",
|
| 52 |
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"82CCF5_d7",
|
| 53 |
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"BAAF62_d14",
|
| 54 |
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"BAAF62_d7"
|
| 55 |
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],
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| 56 |
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"seed": null,
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"selection_audit": [
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| 58 |
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{
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| 59 |
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"donor_id": "BAAF62",
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| 60 |
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| 61 |
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| 62 |
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|
| 63 |
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{
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| 66 |
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| 67 |
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"time_field": "timepoint",
|
| 68 |
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"group": "mild"
|
| 69 |
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| 70 |
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{
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| 71 |
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"sample_id": "BAAF62_d7",
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| 72 |
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| 73 |
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"time_raw": "7",
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| 74 |
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"time_field": "timepoint",
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"group": "mild"
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| 76 |
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{
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| 86 |
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{
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| 87 |
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{
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| 97 |
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{
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| 99 |
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| 104 |
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| 105 |
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| 107 |
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{
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| 132 |
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| 146 |
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| 147 |
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{
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| 148 |
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| 149 |
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| 150 |
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| 151 |
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"time_field": "timepoint",
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| 152 |
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"group": "severe"
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| 153 |
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| 154 |
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{
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| 155 |
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| 161 |
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| 162 |
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| 163 |
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{
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| 181 |
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| 183 |
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| 184 |
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| 187 |
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|
| 188 |
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| 189 |
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| 190 |
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| 191 |
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],
|
| 192 |
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"sha256": "df74fb20effc23b7784248bf76e32951803075e492251168f3d5f83dfdec81ea"
|
| 193 |
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}
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