Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/protocol/splits/imperial_eskd/disease/draw2/support.json +444 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/protocol/splits/imperial_eskd/disease/draw3/support.json +440 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/protocol/splits/imperial_eskd/disease/draw4/support.json +447 -0
- paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/protocol/splits/ji2025_chili/disease/draw0/support.json +177 -0
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/protocol/splits/imperial_eskd/disease/draw2/support.json
ADDED
|
@@ -0,0 +1,444 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "imperial_eskd",
|
| 4 |
+
"design": "disease_existing_draw",
|
| 5 |
+
"unit": "draw2_n5",
|
| 6 |
+
"n_pairs": 5,
|
| 7 |
+
"train_sample_ids": [
|
| 8 |
+
"C164_1105",
|
| 9 |
+
"C85_2004",
|
| 10 |
+
"C101_0601",
|
| 11 |
+
"C60_2504",
|
| 12 |
+
"C187_1201"
|
| 13 |
+
],
|
| 14 |
+
"train_donor_ids": [
|
| 15 |
+
"C164",
|
| 16 |
+
"C85",
|
| 17 |
+
"C101",
|
| 18 |
+
"C60",
|
| 19 |
+
"C187"
|
| 20 |
+
],
|
| 21 |
+
"test_sample_ids": [
|
| 22 |
+
"C20_1004",
|
| 23 |
+
"C20_1404",
|
| 24 |
+
"C21_1004",
|
| 25 |
+
"C21_1704",
|
| 26 |
+
"C21_2504",
|
| 27 |
+
"C23_2204",
|
| 28 |
+
"C31_1304",
|
| 29 |
+
"C31_2004",
|
| 30 |
+
"C31_2704",
|
| 31 |
+
"C33_1401",
|
| 32 |
+
"C33_1601",
|
| 33 |
+
"C33_1901",
|
| 34 |
+
"C34_1404",
|
| 35 |
+
"C34_2104",
|
| 36 |
+
"C34_2504",
|
| 37 |
+
"C36_1504",
|
| 38 |
+
"C36_1704",
|
| 39 |
+
"C36_2104",
|
| 40 |
+
"C40_1504",
|
| 41 |
+
"C40_2204",
|
| 42 |
+
"C40_0105",
|
| 43 |
+
"C42_1504",
|
| 44 |
+
"C42_2204",
|
| 45 |
+
"C42_2704",
|
| 46 |
+
"C58_1604",
|
| 47 |
+
"C58_2501",
|
| 48 |
+
"C58_2901",
|
| 49 |
+
"C58_0102",
|
| 50 |
+
"C58_0402",
|
| 51 |
+
"C58_1003",
|
| 52 |
+
"C63_1704",
|
| 53 |
+
"C63_2404",
|
| 54 |
+
"C63_2904",
|
| 55 |
+
"C65_1704",
|
| 56 |
+
"C65_2104",
|
| 57 |
+
"C65_2504",
|
| 58 |
+
"C69_1804",
|
| 59 |
+
"C82_2504",
|
| 60 |
+
"C93_2104",
|
| 61 |
+
"C93_2704",
|
| 62 |
+
"C93_0405",
|
| 63 |
+
"C103_2204",
|
| 64 |
+
"C104_2204",
|
| 65 |
+
"C106_2204",
|
| 66 |
+
"C108_2204",
|
| 67 |
+
"C108_1501",
|
| 68 |
+
"C108_1801",
|
| 69 |
+
"C108_2201",
|
| 70 |
+
"C113_0605",
|
| 71 |
+
"C123_2404",
|
| 72 |
+
"C123_2904",
|
| 73 |
+
"C123_0505",
|
| 74 |
+
"C124_2404",
|
| 75 |
+
"C124_2704",
|
| 76 |
+
"C124_0105",
|
| 77 |
+
"C126_2504",
|
| 78 |
+
"C126_3004",
|
| 79 |
+
"C126_0605",
|
| 80 |
+
"C127_2504",
|
| 81 |
+
"C127_0405",
|
| 82 |
+
"C127_1105",
|
| 83 |
+
"C128_2504",
|
| 84 |
+
"C128_0405",
|
| 85 |
+
"C128_1105",
|
| 86 |
+
"C132_2804",
|
| 87 |
+
"C132_0205",
|
| 88 |
+
"C132_1105",
|
| 89 |
+
"C137_3004",
|
| 90 |
+
"C137_2502",
|
| 91 |
+
"C138_3004",
|
| 92 |
+
"C138_2301",
|
| 93 |
+
"C138_3001",
|
| 94 |
+
"C138_0202",
|
| 95 |
+
"C138_0402",
|
| 96 |
+
"C140_3004",
|
| 97 |
+
"C140_2801",
|
| 98 |
+
"C140_3001",
|
| 99 |
+
"C140_0202",
|
| 100 |
+
"C140_0402",
|
| 101 |
+
"C140_0602",
|
| 102 |
+
"C140_0902",
|
| 103 |
+
"C140_1103",
|
| 104 |
+
"C141_2001",
|
| 105 |
+
"C141_2201",
|
| 106 |
+
"C141_3001",
|
| 107 |
+
"C141_0202",
|
| 108 |
+
"C142_3004",
|
| 109 |
+
"C145_3004",
|
| 110 |
+
"C145_0701",
|
| 111 |
+
"C145_1201",
|
| 112 |
+
"C145_1401",
|
| 113 |
+
"C145_1901",
|
| 114 |
+
"C145_2301",
|
| 115 |
+
"C146_3004",
|
| 116 |
+
"C146_1201",
|
| 117 |
+
"C146_1401",
|
| 118 |
+
"C146_1601",
|
| 119 |
+
"C146_1901",
|
| 120 |
+
"C146_2301",
|
| 121 |
+
"C146_2701",
|
| 122 |
+
"C146_2502",
|
| 123 |
+
"C147_3004",
|
| 124 |
+
"C147_1401",
|
| 125 |
+
"C147_1901",
|
| 126 |
+
"C152_0405",
|
| 127 |
+
"C161_1105",
|
| 128 |
+
"C167_1205",
|
| 129 |
+
"C168_1205",
|
| 130 |
+
"C168_2001",
|
| 131 |
+
"C168_2301",
|
| 132 |
+
"C168_3001",
|
| 133 |
+
"C168_0202",
|
| 134 |
+
"C168_0403",
|
| 135 |
+
"C169_1205",
|
| 136 |
+
"C169_2001",
|
| 137 |
+
"C169_2301",
|
| 138 |
+
"C169_0202",
|
| 139 |
+
"C169_0403",
|
| 140 |
+
"C170_1205",
|
| 141 |
+
"C170_2301",
|
| 142 |
+
"C170_0202",
|
| 143 |
+
"C170_0402",
|
| 144 |
+
"C170_0403",
|
| 145 |
+
"C190_2605",
|
| 146 |
+
"C190_2901",
|
| 147 |
+
"C190_0102",
|
| 148 |
+
"C190_0302",
|
| 149 |
+
"C190_0502",
|
| 150 |
+
"C190_0802",
|
| 151 |
+
"C190_1002",
|
| 152 |
+
"C190_0903",
|
| 153 |
+
"C193_2605",
|
| 154 |
+
"C195_2605",
|
| 155 |
+
"C197_2605",
|
| 156 |
+
"C212_2705",
|
| 157 |
+
"C214_2705",
|
| 158 |
+
"C234_2805",
|
| 159 |
+
"C237_2805",
|
| 160 |
+
"C238_2905",
|
| 161 |
+
"C240_2905",
|
| 162 |
+
"C246_2905",
|
| 163 |
+
"C251_2905"
|
| 164 |
+
],
|
| 165 |
+
"test_donor_ids": [
|
| 166 |
+
"C20",
|
| 167 |
+
"C20",
|
| 168 |
+
"C21",
|
| 169 |
+
"C21",
|
| 170 |
+
"C21",
|
| 171 |
+
"C23",
|
| 172 |
+
"C31",
|
| 173 |
+
"C31",
|
| 174 |
+
"C31",
|
| 175 |
+
"C33",
|
| 176 |
+
"C33",
|
| 177 |
+
"C33",
|
| 178 |
+
"C34",
|
| 179 |
+
"C34",
|
| 180 |
+
"C34",
|
| 181 |
+
"C36",
|
| 182 |
+
"C36",
|
| 183 |
+
"C36",
|
| 184 |
+
"C40",
|
| 185 |
+
"C40",
|
| 186 |
+
"C40",
|
| 187 |
+
"C42",
|
| 188 |
+
"C42",
|
| 189 |
+
"C42",
|
| 190 |
+
"C58",
|
| 191 |
+
"C58",
|
| 192 |
+
"C58",
|
| 193 |
+
"C58",
|
| 194 |
+
"C58",
|
| 195 |
+
"C58",
|
| 196 |
+
"C63",
|
| 197 |
+
"C63",
|
| 198 |
+
"C63",
|
| 199 |
+
"C65",
|
| 200 |
+
"C65",
|
| 201 |
+
"C65",
|
| 202 |
+
"C69",
|
| 203 |
+
"C82",
|
| 204 |
+
"C93",
|
| 205 |
+
"C93",
|
| 206 |
+
"C93",
|
| 207 |
+
"C103",
|
| 208 |
+
"C104",
|
| 209 |
+
"C106",
|
| 210 |
+
"C108",
|
| 211 |
+
"C108",
|
| 212 |
+
"C108",
|
| 213 |
+
"C108",
|
| 214 |
+
"C113",
|
| 215 |
+
"C123",
|
| 216 |
+
"C123",
|
| 217 |
+
"C123",
|
| 218 |
+
"C124",
|
| 219 |
+
"C124",
|
| 220 |
+
"C124",
|
| 221 |
+
"C126",
|
| 222 |
+
"C126",
|
| 223 |
+
"C126",
|
| 224 |
+
"C127",
|
| 225 |
+
"C127",
|
| 226 |
+
"C127",
|
| 227 |
+
"C128",
|
| 228 |
+
"C128",
|
| 229 |
+
"C128",
|
| 230 |
+
"C132",
|
| 231 |
+
"C132",
|
| 232 |
+
"C132",
|
| 233 |
+
"C137",
|
| 234 |
+
"C137",
|
| 235 |
+
"C138",
|
| 236 |
+
"C138",
|
| 237 |
+
"C138",
|
| 238 |
+
"C138",
|
| 239 |
+
"C138",
|
| 240 |
+
"C140",
|
| 241 |
+
"C140",
|
| 242 |
+
"C140",
|
| 243 |
+
"C140",
|
| 244 |
+
"C140",
|
| 245 |
+
"C140",
|
| 246 |
+
"C140",
|
| 247 |
+
"C140",
|
| 248 |
+
"C141",
|
| 249 |
+
"C141",
|
| 250 |
+
"C141",
|
| 251 |
+
"C141",
|
| 252 |
+
"C142",
|
| 253 |
+
"C145",
|
| 254 |
+
"C145",
|
| 255 |
+
"C145",
|
| 256 |
+
"C145",
|
| 257 |
+
"C145",
|
| 258 |
+
"C145",
|
| 259 |
+
"C146",
|
| 260 |
+
"C146",
|
| 261 |
+
"C146",
|
| 262 |
+
"C146",
|
| 263 |
+
"C146",
|
| 264 |
+
"C146",
|
| 265 |
+
"C146",
|
| 266 |
+
"C146",
|
| 267 |
+
"C147",
|
| 268 |
+
"C147",
|
| 269 |
+
"C147",
|
| 270 |
+
"C152",
|
| 271 |
+
"C161",
|
| 272 |
+
"C167",
|
| 273 |
+
"C168",
|
| 274 |
+
"C168",
|
| 275 |
+
"C168",
|
| 276 |
+
"C168",
|
| 277 |
+
"C168",
|
| 278 |
+
"C168",
|
| 279 |
+
"C169",
|
| 280 |
+
"C169",
|
| 281 |
+
"C169",
|
| 282 |
+
"C169",
|
| 283 |
+
"C169",
|
| 284 |
+
"C170",
|
| 285 |
+
"C170",
|
| 286 |
+
"C170",
|
| 287 |
+
"C170",
|
| 288 |
+
"C170",
|
| 289 |
+
"C190",
|
| 290 |
+
"C190",
|
| 291 |
+
"C190",
|
| 292 |
+
"C190",
|
| 293 |
+
"C190",
|
| 294 |
+
"C190",
|
| 295 |
+
"C190",
|
| 296 |
+
"C190",
|
| 297 |
+
"C193",
|
| 298 |
+
"C195",
|
| 299 |
+
"C197",
|
| 300 |
+
"C212",
|
| 301 |
+
"C214",
|
| 302 |
+
"C234",
|
| 303 |
+
"C237",
|
| 304 |
+
"C238",
|
| 305 |
+
"C240",
|
| 306 |
+
"C246",
|
| 307 |
+
"C251"
|
| 308 |
+
],
|
| 309 |
+
"excluded_sample_ids": [
|
| 310 |
+
"C101_1101",
|
| 311 |
+
"C101_1301",
|
| 312 |
+
"C101_1801",
|
| 313 |
+
"C101_2001",
|
| 314 |
+
"C101_2502",
|
| 315 |
+
"C187_1401",
|
| 316 |
+
"C187_1901",
|
| 317 |
+
"C187_2301",
|
| 318 |
+
"C187_2502",
|
| 319 |
+
"C187_2605"
|
| 320 |
+
],
|
| 321 |
+
"seed": null,
|
| 322 |
+
"selection_audit": [
|
| 323 |
+
{
|
| 324 |
+
"donor_id": "C164",
|
| 325 |
+
"assigned_stratum": false,
|
| 326 |
+
"selected_sample_id": "C164_1105",
|
| 327 |
+
"candidates": [
|
| 328 |
+
{
|
| 329 |
+
"sample_id": "C164_1105",
|
| 330 |
+
"time_value": 737556.0,
|
| 331 |
+
"time_raw": "11/05/2020",
|
| 332 |
+
"time_field": "sample_date",
|
| 333 |
+
"group": "covid_negative"
|
| 334 |
+
}
|
| 335 |
+
]
|
| 336 |
+
},
|
| 337 |
+
{
|
| 338 |
+
"donor_id": "C85",
|
| 339 |
+
"assigned_stratum": false,
|
| 340 |
+
"selected_sample_id": "C85_2004",
|
| 341 |
+
"candidates": [
|
| 342 |
+
{
|
| 343 |
+
"sample_id": "C85_2004",
|
| 344 |
+
"time_value": 737535.0,
|
| 345 |
+
"time_raw": "20/04/2020",
|
| 346 |
+
"time_field": "sample_date",
|
| 347 |
+
"group": "covid_negative"
|
| 348 |
+
}
|
| 349 |
+
]
|
| 350 |
+
},
|
| 351 |
+
{
|
| 352 |
+
"donor_id": "C101",
|
| 353 |
+
"assigned_stratum": true,
|
| 354 |
+
"selected_sample_id": "C101_0601",
|
| 355 |
+
"candidates": [
|
| 356 |
+
{
|
| 357 |
+
"sample_id": "C101_0601",
|
| 358 |
+
"time_value": 737796.0,
|
| 359 |
+
"time_raw": "06/01/2021",
|
| 360 |
+
"time_field": "sample_date",
|
| 361 |
+
"group": "covid_positive"
|
| 362 |
+
},
|
| 363 |
+
{
|
| 364 |
+
"sample_id": "C101_1101",
|
| 365 |
+
"time_value": 737801.0,
|
| 366 |
+
"time_raw": "11/01/2021",
|
| 367 |
+
"time_field": "sample_date",
|
| 368 |
+
"group": "covid_positive"
|
| 369 |
+
},
|
| 370 |
+
{
|
| 371 |
+
"sample_id": "C101_1301",
|
| 372 |
+
"time_value": 737803.0,
|
| 373 |
+
"time_raw": "13/01/2021",
|
| 374 |
+
"time_field": "sample_date",
|
| 375 |
+
"group": "covid_positive"
|
| 376 |
+
},
|
| 377 |
+
{
|
| 378 |
+
"sample_id": "C101_1801",
|
| 379 |
+
"time_value": 737808.0,
|
| 380 |
+
"time_raw": "18/01/2021",
|
| 381 |
+
"time_field": "sample_date",
|
| 382 |
+
"group": "covid_positive"
|
| 383 |
+
},
|
| 384 |
+
{
|
| 385 |
+
"sample_id": "C101_2001",
|
| 386 |
+
"time_value": 737810.0,
|
| 387 |
+
"time_raw": "20/01/2021",
|
| 388 |
+
"time_field": "sample_date",
|
| 389 |
+
"group": "covid_positive"
|
| 390 |
+
}
|
| 391 |
+
]
|
| 392 |
+
},
|
| 393 |
+
{
|
| 394 |
+
"donor_id": "C60",
|
| 395 |
+
"assigned_stratum": true,
|
| 396 |
+
"selected_sample_id": "C60_2504",
|
| 397 |
+
"candidates": [
|
| 398 |
+
{
|
| 399 |
+
"sample_id": "C60_2504",
|
| 400 |
+
"time_value": 737540.0,
|
| 401 |
+
"time_raw": "25/04/2020",
|
| 402 |
+
"time_field": "sample_date",
|
| 403 |
+
"group": "covid_positive"
|
| 404 |
+
}
|
| 405 |
+
]
|
| 406 |
+
},
|
| 407 |
+
{
|
| 408 |
+
"donor_id": "C187",
|
| 409 |
+
"assigned_stratum": true,
|
| 410 |
+
"selected_sample_id": "C187_1201",
|
| 411 |
+
"candidates": [
|
| 412 |
+
{
|
| 413 |
+
"sample_id": "C187_1201",
|
| 414 |
+
"time_value": 737802.0,
|
| 415 |
+
"time_raw": "12/01/2021",
|
| 416 |
+
"time_field": "sample_date",
|
| 417 |
+
"group": "covid_positive"
|
| 418 |
+
},
|
| 419 |
+
{
|
| 420 |
+
"sample_id": "C187_1401",
|
| 421 |
+
"time_value": 737804.0,
|
| 422 |
+
"time_raw": "14/01/2021",
|
| 423 |
+
"time_field": "sample_date",
|
| 424 |
+
"group": "covid_positive"
|
| 425 |
+
},
|
| 426 |
+
{
|
| 427 |
+
"sample_id": "C187_1901",
|
| 428 |
+
"time_value": 737809.0,
|
| 429 |
+
"time_raw": "19/01/2021",
|
| 430 |
+
"time_field": "sample_date",
|
| 431 |
+
"group": "covid_positive"
|
| 432 |
+
},
|
| 433 |
+
{
|
| 434 |
+
"sample_id": "C187_2301",
|
| 435 |
+
"time_value": 737813.0,
|
| 436 |
+
"time_raw": "23/01/2021",
|
| 437 |
+
"time_field": "sample_date",
|
| 438 |
+
"group": "covid_positive"
|
| 439 |
+
}
|
| 440 |
+
]
|
| 441 |
+
}
|
| 442 |
+
],
|
| 443 |
+
"sha256": "7cc7f8a8c723f40018201189afbe5460063eaa6b81a1ac9198b46e388f4d9e8e"
|
| 444 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/protocol/splits/imperial_eskd/disease/draw3/support.json
ADDED
|
@@ -0,0 +1,440 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "imperial_eskd",
|
| 4 |
+
"design": "disease_existing_draw",
|
| 5 |
+
"unit": "draw3_n5",
|
| 6 |
+
"n_pairs": 5,
|
| 7 |
+
"train_sample_ids": [
|
| 8 |
+
"C240_2905",
|
| 9 |
+
"C251_2905",
|
| 10 |
+
"C31_1304",
|
| 11 |
+
"C108_1501",
|
| 12 |
+
"C40_1504"
|
| 13 |
+
],
|
| 14 |
+
"train_donor_ids": [
|
| 15 |
+
"C240",
|
| 16 |
+
"C251",
|
| 17 |
+
"C31",
|
| 18 |
+
"C108",
|
| 19 |
+
"C40"
|
| 20 |
+
],
|
| 21 |
+
"test_sample_ids": [
|
| 22 |
+
"C20_1004",
|
| 23 |
+
"C20_1404",
|
| 24 |
+
"C21_1004",
|
| 25 |
+
"C21_1704",
|
| 26 |
+
"C21_2504",
|
| 27 |
+
"C23_2204",
|
| 28 |
+
"C33_1401",
|
| 29 |
+
"C33_1601",
|
| 30 |
+
"C33_1901",
|
| 31 |
+
"C34_1404",
|
| 32 |
+
"C34_2104",
|
| 33 |
+
"C34_2504",
|
| 34 |
+
"C36_1504",
|
| 35 |
+
"C36_1704",
|
| 36 |
+
"C36_2104",
|
| 37 |
+
"C42_1504",
|
| 38 |
+
"C42_2204",
|
| 39 |
+
"C42_2704",
|
| 40 |
+
"C58_1604",
|
| 41 |
+
"C58_2501",
|
| 42 |
+
"C58_2901",
|
| 43 |
+
"C58_0102",
|
| 44 |
+
"C58_0402",
|
| 45 |
+
"C58_1003",
|
| 46 |
+
"C60_2504",
|
| 47 |
+
"C63_1704",
|
| 48 |
+
"C63_2404",
|
| 49 |
+
"C63_2904",
|
| 50 |
+
"C65_1704",
|
| 51 |
+
"C65_2104",
|
| 52 |
+
"C65_2504",
|
| 53 |
+
"C69_1804",
|
| 54 |
+
"C82_2504",
|
| 55 |
+
"C85_2004",
|
| 56 |
+
"C93_2104",
|
| 57 |
+
"C93_2704",
|
| 58 |
+
"C93_0405",
|
| 59 |
+
"C101_0601",
|
| 60 |
+
"C101_1101",
|
| 61 |
+
"C101_1301",
|
| 62 |
+
"C101_1801",
|
| 63 |
+
"C101_2001",
|
| 64 |
+
"C101_2502",
|
| 65 |
+
"C103_2204",
|
| 66 |
+
"C104_2204",
|
| 67 |
+
"C106_2204",
|
| 68 |
+
"C113_0605",
|
| 69 |
+
"C123_2404",
|
| 70 |
+
"C123_2904",
|
| 71 |
+
"C123_0505",
|
| 72 |
+
"C124_2404",
|
| 73 |
+
"C124_2704",
|
| 74 |
+
"C124_0105",
|
| 75 |
+
"C126_2504",
|
| 76 |
+
"C126_3004",
|
| 77 |
+
"C126_0605",
|
| 78 |
+
"C127_2504",
|
| 79 |
+
"C127_0405",
|
| 80 |
+
"C127_1105",
|
| 81 |
+
"C128_2504",
|
| 82 |
+
"C128_0405",
|
| 83 |
+
"C128_1105",
|
| 84 |
+
"C132_2804",
|
| 85 |
+
"C132_0205",
|
| 86 |
+
"C132_1105",
|
| 87 |
+
"C137_3004",
|
| 88 |
+
"C137_2502",
|
| 89 |
+
"C138_3004",
|
| 90 |
+
"C138_2301",
|
| 91 |
+
"C138_3001",
|
| 92 |
+
"C138_0202",
|
| 93 |
+
"C138_0402",
|
| 94 |
+
"C140_3004",
|
| 95 |
+
"C140_2801",
|
| 96 |
+
"C140_3001",
|
| 97 |
+
"C140_0202",
|
| 98 |
+
"C140_0402",
|
| 99 |
+
"C140_0602",
|
| 100 |
+
"C140_0902",
|
| 101 |
+
"C140_1103",
|
| 102 |
+
"C141_2001",
|
| 103 |
+
"C141_2201",
|
| 104 |
+
"C141_3001",
|
| 105 |
+
"C141_0202",
|
| 106 |
+
"C142_3004",
|
| 107 |
+
"C145_3004",
|
| 108 |
+
"C145_0701",
|
| 109 |
+
"C145_1201",
|
| 110 |
+
"C145_1401",
|
| 111 |
+
"C145_1901",
|
| 112 |
+
"C145_2301",
|
| 113 |
+
"C146_3004",
|
| 114 |
+
"C146_1201",
|
| 115 |
+
"C146_1401",
|
| 116 |
+
"C146_1601",
|
| 117 |
+
"C146_1901",
|
| 118 |
+
"C146_2301",
|
| 119 |
+
"C146_2701",
|
| 120 |
+
"C146_2502",
|
| 121 |
+
"C147_3004",
|
| 122 |
+
"C147_1401",
|
| 123 |
+
"C147_1901",
|
| 124 |
+
"C152_0405",
|
| 125 |
+
"C161_1105",
|
| 126 |
+
"C164_1105",
|
| 127 |
+
"C167_1205",
|
| 128 |
+
"C168_1205",
|
| 129 |
+
"C168_2001",
|
| 130 |
+
"C168_2301",
|
| 131 |
+
"C168_3001",
|
| 132 |
+
"C168_0202",
|
| 133 |
+
"C168_0403",
|
| 134 |
+
"C169_1205",
|
| 135 |
+
"C169_2001",
|
| 136 |
+
"C169_2301",
|
| 137 |
+
"C169_0202",
|
| 138 |
+
"C169_0403",
|
| 139 |
+
"C170_1205",
|
| 140 |
+
"C170_2301",
|
| 141 |
+
"C170_0202",
|
| 142 |
+
"C170_0402",
|
| 143 |
+
"C170_0403",
|
| 144 |
+
"C187_2605",
|
| 145 |
+
"C187_1201",
|
| 146 |
+
"C187_1401",
|
| 147 |
+
"C187_1901",
|
| 148 |
+
"C187_2301",
|
| 149 |
+
"C187_2502",
|
| 150 |
+
"C190_2605",
|
| 151 |
+
"C190_2901",
|
| 152 |
+
"C190_0102",
|
| 153 |
+
"C190_0302",
|
| 154 |
+
"C190_0502",
|
| 155 |
+
"C190_0802",
|
| 156 |
+
"C190_1002",
|
| 157 |
+
"C190_0903",
|
| 158 |
+
"C193_2605",
|
| 159 |
+
"C195_2605",
|
| 160 |
+
"C197_2605",
|
| 161 |
+
"C212_2705",
|
| 162 |
+
"C214_2705",
|
| 163 |
+
"C234_2805",
|
| 164 |
+
"C237_2805",
|
| 165 |
+
"C238_2905",
|
| 166 |
+
"C246_2905"
|
| 167 |
+
],
|
| 168 |
+
"test_donor_ids": [
|
| 169 |
+
"C20",
|
| 170 |
+
"C20",
|
| 171 |
+
"C21",
|
| 172 |
+
"C21",
|
| 173 |
+
"C21",
|
| 174 |
+
"C23",
|
| 175 |
+
"C33",
|
| 176 |
+
"C33",
|
| 177 |
+
"C33",
|
| 178 |
+
"C34",
|
| 179 |
+
"C34",
|
| 180 |
+
"C34",
|
| 181 |
+
"C36",
|
| 182 |
+
"C36",
|
| 183 |
+
"C36",
|
| 184 |
+
"C42",
|
| 185 |
+
"C42",
|
| 186 |
+
"C42",
|
| 187 |
+
"C58",
|
| 188 |
+
"C58",
|
| 189 |
+
"C58",
|
| 190 |
+
"C58",
|
| 191 |
+
"C58",
|
| 192 |
+
"C58",
|
| 193 |
+
"C60",
|
| 194 |
+
"C63",
|
| 195 |
+
"C63",
|
| 196 |
+
"C63",
|
| 197 |
+
"C65",
|
| 198 |
+
"C65",
|
| 199 |
+
"C65",
|
| 200 |
+
"C69",
|
| 201 |
+
"C82",
|
| 202 |
+
"C85",
|
| 203 |
+
"C93",
|
| 204 |
+
"C93",
|
| 205 |
+
"C93",
|
| 206 |
+
"C101",
|
| 207 |
+
"C101",
|
| 208 |
+
"C101",
|
| 209 |
+
"C101",
|
| 210 |
+
"C101",
|
| 211 |
+
"C101",
|
| 212 |
+
"C103",
|
| 213 |
+
"C104",
|
| 214 |
+
"C106",
|
| 215 |
+
"C113",
|
| 216 |
+
"C123",
|
| 217 |
+
"C123",
|
| 218 |
+
"C123",
|
| 219 |
+
"C124",
|
| 220 |
+
"C124",
|
| 221 |
+
"C124",
|
| 222 |
+
"C126",
|
| 223 |
+
"C126",
|
| 224 |
+
"C126",
|
| 225 |
+
"C127",
|
| 226 |
+
"C127",
|
| 227 |
+
"C127",
|
| 228 |
+
"C128",
|
| 229 |
+
"C128",
|
| 230 |
+
"C128",
|
| 231 |
+
"C132",
|
| 232 |
+
"C132",
|
| 233 |
+
"C132",
|
| 234 |
+
"C137",
|
| 235 |
+
"C137",
|
| 236 |
+
"C138",
|
| 237 |
+
"C138",
|
| 238 |
+
"C138",
|
| 239 |
+
"C138",
|
| 240 |
+
"C138",
|
| 241 |
+
"C140",
|
| 242 |
+
"C140",
|
| 243 |
+
"C140",
|
| 244 |
+
"C140",
|
| 245 |
+
"C140",
|
| 246 |
+
"C140",
|
| 247 |
+
"C140",
|
| 248 |
+
"C140",
|
| 249 |
+
"C141",
|
| 250 |
+
"C141",
|
| 251 |
+
"C141",
|
| 252 |
+
"C141",
|
| 253 |
+
"C142",
|
| 254 |
+
"C145",
|
| 255 |
+
"C145",
|
| 256 |
+
"C145",
|
| 257 |
+
"C145",
|
| 258 |
+
"C145",
|
| 259 |
+
"C145",
|
| 260 |
+
"C146",
|
| 261 |
+
"C146",
|
| 262 |
+
"C146",
|
| 263 |
+
"C146",
|
| 264 |
+
"C146",
|
| 265 |
+
"C146",
|
| 266 |
+
"C146",
|
| 267 |
+
"C146",
|
| 268 |
+
"C147",
|
| 269 |
+
"C147",
|
| 270 |
+
"C147",
|
| 271 |
+
"C152",
|
| 272 |
+
"C161",
|
| 273 |
+
"C164",
|
| 274 |
+
"C167",
|
| 275 |
+
"C168",
|
| 276 |
+
"C168",
|
| 277 |
+
"C168",
|
| 278 |
+
"C168",
|
| 279 |
+
"C168",
|
| 280 |
+
"C168",
|
| 281 |
+
"C169",
|
| 282 |
+
"C169",
|
| 283 |
+
"C169",
|
| 284 |
+
"C169",
|
| 285 |
+
"C169",
|
| 286 |
+
"C170",
|
| 287 |
+
"C170",
|
| 288 |
+
"C170",
|
| 289 |
+
"C170",
|
| 290 |
+
"C170",
|
| 291 |
+
"C187",
|
| 292 |
+
"C187",
|
| 293 |
+
"C187",
|
| 294 |
+
"C187",
|
| 295 |
+
"C187",
|
| 296 |
+
"C187",
|
| 297 |
+
"C190",
|
| 298 |
+
"C190",
|
| 299 |
+
"C190",
|
| 300 |
+
"C190",
|
| 301 |
+
"C190",
|
| 302 |
+
"C190",
|
| 303 |
+
"C190",
|
| 304 |
+
"C190",
|
| 305 |
+
"C193",
|
| 306 |
+
"C195",
|
| 307 |
+
"C197",
|
| 308 |
+
"C212",
|
| 309 |
+
"C214",
|
| 310 |
+
"C234",
|
| 311 |
+
"C237",
|
| 312 |
+
"C238",
|
| 313 |
+
"C246"
|
| 314 |
+
],
|
| 315 |
+
"excluded_sample_ids": [
|
| 316 |
+
"C108_1801",
|
| 317 |
+
"C108_2201",
|
| 318 |
+
"C108_2204",
|
| 319 |
+
"C31_2004",
|
| 320 |
+
"C31_2704",
|
| 321 |
+
"C40_0105",
|
| 322 |
+
"C40_2204"
|
| 323 |
+
],
|
| 324 |
+
"seed": null,
|
| 325 |
+
"selection_audit": [
|
| 326 |
+
{
|
| 327 |
+
"donor_id": "C240",
|
| 328 |
+
"assigned_stratum": false,
|
| 329 |
+
"selected_sample_id": "C240_2905",
|
| 330 |
+
"candidates": [
|
| 331 |
+
{
|
| 332 |
+
"sample_id": "C240_2905",
|
| 333 |
+
"time_value": 737574.0,
|
| 334 |
+
"time_raw": "29/05/2020",
|
| 335 |
+
"time_field": "sample_date",
|
| 336 |
+
"group": "covid_negative"
|
| 337 |
+
}
|
| 338 |
+
]
|
| 339 |
+
},
|
| 340 |
+
{
|
| 341 |
+
"donor_id": "C251",
|
| 342 |
+
"assigned_stratum": false,
|
| 343 |
+
"selected_sample_id": "C251_2905",
|
| 344 |
+
"candidates": [
|
| 345 |
+
{
|
| 346 |
+
"sample_id": "C251_2905",
|
| 347 |
+
"time_value": 737574.0,
|
| 348 |
+
"time_raw": "29/05/2020",
|
| 349 |
+
"time_field": "sample_date",
|
| 350 |
+
"group": "covid_negative"
|
| 351 |
+
}
|
| 352 |
+
]
|
| 353 |
+
},
|
| 354 |
+
{
|
| 355 |
+
"donor_id": "C31",
|
| 356 |
+
"assigned_stratum": true,
|
| 357 |
+
"selected_sample_id": "C31_1304",
|
| 358 |
+
"candidates": [
|
| 359 |
+
{
|
| 360 |
+
"sample_id": "C31_1304",
|
| 361 |
+
"time_value": 737528.0,
|
| 362 |
+
"time_raw": "13/04/2020",
|
| 363 |
+
"time_field": "sample_date",
|
| 364 |
+
"group": "covid_positive"
|
| 365 |
+
},
|
| 366 |
+
{
|
| 367 |
+
"sample_id": "C31_2004",
|
| 368 |
+
"time_value": 737535.0,
|
| 369 |
+
"time_raw": "20/04/2020",
|
| 370 |
+
"time_field": "sample_date",
|
| 371 |
+
"group": "covid_positive"
|
| 372 |
+
},
|
| 373 |
+
{
|
| 374 |
+
"sample_id": "C31_2704",
|
| 375 |
+
"time_value": 737542.0,
|
| 376 |
+
"time_raw": "27/04/2020",
|
| 377 |
+
"time_field": "sample_date",
|
| 378 |
+
"group": "covid_positive"
|
| 379 |
+
}
|
| 380 |
+
]
|
| 381 |
+
},
|
| 382 |
+
{
|
| 383 |
+
"donor_id": "C108",
|
| 384 |
+
"assigned_stratum": true,
|
| 385 |
+
"selected_sample_id": "C108_1501",
|
| 386 |
+
"candidates": [
|
| 387 |
+
{
|
| 388 |
+
"sample_id": "C108_1501",
|
| 389 |
+
"time_value": 737805.0,
|
| 390 |
+
"time_raw": "15/01/2021",
|
| 391 |
+
"time_field": "sample_date",
|
| 392 |
+
"group": "covid_positive"
|
| 393 |
+
},
|
| 394 |
+
{
|
| 395 |
+
"sample_id": "C108_1801",
|
| 396 |
+
"time_value": 737808.0,
|
| 397 |
+
"time_raw": "18/01/2021",
|
| 398 |
+
"time_field": "sample_date",
|
| 399 |
+
"group": "covid_positive"
|
| 400 |
+
},
|
| 401 |
+
{
|
| 402 |
+
"sample_id": "C108_2201",
|
| 403 |
+
"time_value": 737812.0,
|
| 404 |
+
"time_raw": "22/01/2021",
|
| 405 |
+
"time_field": "sample_date",
|
| 406 |
+
"group": "covid_positive"
|
| 407 |
+
}
|
| 408 |
+
]
|
| 409 |
+
},
|
| 410 |
+
{
|
| 411 |
+
"donor_id": "C40",
|
| 412 |
+
"assigned_stratum": true,
|
| 413 |
+
"selected_sample_id": "C40_1504",
|
| 414 |
+
"candidates": [
|
| 415 |
+
{
|
| 416 |
+
"sample_id": "C40_1504",
|
| 417 |
+
"time_value": 737530.0,
|
| 418 |
+
"time_raw": "15/04/2020",
|
| 419 |
+
"time_field": "sample_date",
|
| 420 |
+
"group": "covid_positive"
|
| 421 |
+
},
|
| 422 |
+
{
|
| 423 |
+
"sample_id": "C40_2204",
|
| 424 |
+
"time_value": 737537.0,
|
| 425 |
+
"time_raw": "22/04/2020",
|
| 426 |
+
"time_field": "sample_date",
|
| 427 |
+
"group": "covid_positive"
|
| 428 |
+
},
|
| 429 |
+
{
|
| 430 |
+
"sample_id": "C40_0105",
|
| 431 |
+
"time_value": 737546.0,
|
| 432 |
+
"time_raw": "01/05/2020",
|
| 433 |
+
"time_field": "sample_date",
|
| 434 |
+
"group": "covid_positive"
|
| 435 |
+
}
|
| 436 |
+
]
|
| 437 |
+
}
|
| 438 |
+
],
|
| 439 |
+
"sha256": "28fb70b356b7850892eab0f7c543f47d99041c1b6ac91d776d04125d532c08ce"
|
| 440 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/protocol/splits/imperial_eskd/disease/draw4/support.json
ADDED
|
@@ -0,0 +1,447 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "imperial_eskd",
|
| 4 |
+
"design": "disease_existing_draw",
|
| 5 |
+
"unit": "draw4_n5",
|
| 6 |
+
"n_pairs": 5,
|
| 7 |
+
"train_sample_ids": [
|
| 8 |
+
"C152_0405",
|
| 9 |
+
"C137_3004",
|
| 10 |
+
"C33_1401",
|
| 11 |
+
"C170_2301",
|
| 12 |
+
"C36_1504"
|
| 13 |
+
],
|
| 14 |
+
"train_donor_ids": [
|
| 15 |
+
"C152",
|
| 16 |
+
"C137",
|
| 17 |
+
"C33",
|
| 18 |
+
"C170",
|
| 19 |
+
"C36"
|
| 20 |
+
],
|
| 21 |
+
"test_sample_ids": [
|
| 22 |
+
"C20_1004",
|
| 23 |
+
"C20_1404",
|
| 24 |
+
"C21_1004",
|
| 25 |
+
"C21_1704",
|
| 26 |
+
"C21_2504",
|
| 27 |
+
"C23_2204",
|
| 28 |
+
"C31_1304",
|
| 29 |
+
"C31_2004",
|
| 30 |
+
"C31_2704",
|
| 31 |
+
"C34_1404",
|
| 32 |
+
"C34_2104",
|
| 33 |
+
"C34_2504",
|
| 34 |
+
"C40_1504",
|
| 35 |
+
"C40_2204",
|
| 36 |
+
"C40_0105",
|
| 37 |
+
"C42_1504",
|
| 38 |
+
"C42_2204",
|
| 39 |
+
"C42_2704",
|
| 40 |
+
"C58_1604",
|
| 41 |
+
"C58_2501",
|
| 42 |
+
"C58_2901",
|
| 43 |
+
"C58_0102",
|
| 44 |
+
"C58_0402",
|
| 45 |
+
"C58_1003",
|
| 46 |
+
"C60_2504",
|
| 47 |
+
"C63_1704",
|
| 48 |
+
"C63_2404",
|
| 49 |
+
"C63_2904",
|
| 50 |
+
"C65_1704",
|
| 51 |
+
"C65_2104",
|
| 52 |
+
"C65_2504",
|
| 53 |
+
"C69_1804",
|
| 54 |
+
"C82_2504",
|
| 55 |
+
"C85_2004",
|
| 56 |
+
"C93_2104",
|
| 57 |
+
"C93_2704",
|
| 58 |
+
"C93_0405",
|
| 59 |
+
"C101_0601",
|
| 60 |
+
"C101_1101",
|
| 61 |
+
"C101_1301",
|
| 62 |
+
"C101_1801",
|
| 63 |
+
"C101_2001",
|
| 64 |
+
"C101_2502",
|
| 65 |
+
"C103_2204",
|
| 66 |
+
"C104_2204",
|
| 67 |
+
"C106_2204",
|
| 68 |
+
"C108_2204",
|
| 69 |
+
"C108_1501",
|
| 70 |
+
"C108_1801",
|
| 71 |
+
"C108_2201",
|
| 72 |
+
"C113_0605",
|
| 73 |
+
"C123_2404",
|
| 74 |
+
"C123_2904",
|
| 75 |
+
"C123_0505",
|
| 76 |
+
"C124_2404",
|
| 77 |
+
"C124_2704",
|
| 78 |
+
"C124_0105",
|
| 79 |
+
"C126_2504",
|
| 80 |
+
"C126_3004",
|
| 81 |
+
"C126_0605",
|
| 82 |
+
"C127_2504",
|
| 83 |
+
"C127_0405",
|
| 84 |
+
"C127_1105",
|
| 85 |
+
"C128_2504",
|
| 86 |
+
"C128_0405",
|
| 87 |
+
"C128_1105",
|
| 88 |
+
"C132_2804",
|
| 89 |
+
"C132_0205",
|
| 90 |
+
"C132_1105",
|
| 91 |
+
"C138_3004",
|
| 92 |
+
"C138_2301",
|
| 93 |
+
"C138_3001",
|
| 94 |
+
"C138_0202",
|
| 95 |
+
"C138_0402",
|
| 96 |
+
"C140_3004",
|
| 97 |
+
"C140_2801",
|
| 98 |
+
"C140_3001",
|
| 99 |
+
"C140_0202",
|
| 100 |
+
"C140_0402",
|
| 101 |
+
"C140_0602",
|
| 102 |
+
"C140_0902",
|
| 103 |
+
"C140_1103",
|
| 104 |
+
"C141_2001",
|
| 105 |
+
"C141_2201",
|
| 106 |
+
"C141_3001",
|
| 107 |
+
"C141_0202",
|
| 108 |
+
"C142_3004",
|
| 109 |
+
"C145_3004",
|
| 110 |
+
"C145_0701",
|
| 111 |
+
"C145_1201",
|
| 112 |
+
"C145_1401",
|
| 113 |
+
"C145_1901",
|
| 114 |
+
"C145_2301",
|
| 115 |
+
"C146_3004",
|
| 116 |
+
"C146_1201",
|
| 117 |
+
"C146_1401",
|
| 118 |
+
"C146_1601",
|
| 119 |
+
"C146_1901",
|
| 120 |
+
"C146_2301",
|
| 121 |
+
"C146_2701",
|
| 122 |
+
"C146_2502",
|
| 123 |
+
"C147_3004",
|
| 124 |
+
"C147_1401",
|
| 125 |
+
"C147_1901",
|
| 126 |
+
"C161_1105",
|
| 127 |
+
"C164_1105",
|
| 128 |
+
"C167_1205",
|
| 129 |
+
"C168_1205",
|
| 130 |
+
"C168_2001",
|
| 131 |
+
"C168_2301",
|
| 132 |
+
"C168_3001",
|
| 133 |
+
"C168_0202",
|
| 134 |
+
"C168_0403",
|
| 135 |
+
"C169_1205",
|
| 136 |
+
"C169_2001",
|
| 137 |
+
"C169_2301",
|
| 138 |
+
"C169_0202",
|
| 139 |
+
"C169_0403",
|
| 140 |
+
"C187_2605",
|
| 141 |
+
"C187_1201",
|
| 142 |
+
"C187_1401",
|
| 143 |
+
"C187_1901",
|
| 144 |
+
"C187_2301",
|
| 145 |
+
"C187_2502",
|
| 146 |
+
"C190_2605",
|
| 147 |
+
"C190_2901",
|
| 148 |
+
"C190_0102",
|
| 149 |
+
"C190_0302",
|
| 150 |
+
"C190_0502",
|
| 151 |
+
"C190_0802",
|
| 152 |
+
"C190_1002",
|
| 153 |
+
"C190_0903",
|
| 154 |
+
"C193_2605",
|
| 155 |
+
"C195_2605",
|
| 156 |
+
"C197_2605",
|
| 157 |
+
"C212_2705",
|
| 158 |
+
"C214_2705",
|
| 159 |
+
"C234_2805",
|
| 160 |
+
"C237_2805",
|
| 161 |
+
"C238_2905",
|
| 162 |
+
"C240_2905",
|
| 163 |
+
"C246_2905",
|
| 164 |
+
"C251_2905"
|
| 165 |
+
],
|
| 166 |
+
"test_donor_ids": [
|
| 167 |
+
"C20",
|
| 168 |
+
"C20",
|
| 169 |
+
"C21",
|
| 170 |
+
"C21",
|
| 171 |
+
"C21",
|
| 172 |
+
"C23",
|
| 173 |
+
"C31",
|
| 174 |
+
"C31",
|
| 175 |
+
"C31",
|
| 176 |
+
"C34",
|
| 177 |
+
"C34",
|
| 178 |
+
"C34",
|
| 179 |
+
"C40",
|
| 180 |
+
"C40",
|
| 181 |
+
"C40",
|
| 182 |
+
"C42",
|
| 183 |
+
"C42",
|
| 184 |
+
"C42",
|
| 185 |
+
"C58",
|
| 186 |
+
"C58",
|
| 187 |
+
"C58",
|
| 188 |
+
"C58",
|
| 189 |
+
"C58",
|
| 190 |
+
"C58",
|
| 191 |
+
"C60",
|
| 192 |
+
"C63",
|
| 193 |
+
"C63",
|
| 194 |
+
"C63",
|
| 195 |
+
"C65",
|
| 196 |
+
"C65",
|
| 197 |
+
"C65",
|
| 198 |
+
"C69",
|
| 199 |
+
"C82",
|
| 200 |
+
"C85",
|
| 201 |
+
"C93",
|
| 202 |
+
"C93",
|
| 203 |
+
"C93",
|
| 204 |
+
"C101",
|
| 205 |
+
"C101",
|
| 206 |
+
"C101",
|
| 207 |
+
"C101",
|
| 208 |
+
"C101",
|
| 209 |
+
"C101",
|
| 210 |
+
"C103",
|
| 211 |
+
"C104",
|
| 212 |
+
"C106",
|
| 213 |
+
"C108",
|
| 214 |
+
"C108",
|
| 215 |
+
"C108",
|
| 216 |
+
"C108",
|
| 217 |
+
"C113",
|
| 218 |
+
"C123",
|
| 219 |
+
"C123",
|
| 220 |
+
"C123",
|
| 221 |
+
"C124",
|
| 222 |
+
"C124",
|
| 223 |
+
"C124",
|
| 224 |
+
"C126",
|
| 225 |
+
"C126",
|
| 226 |
+
"C126",
|
| 227 |
+
"C127",
|
| 228 |
+
"C127",
|
| 229 |
+
"C127",
|
| 230 |
+
"C128",
|
| 231 |
+
"C128",
|
| 232 |
+
"C128",
|
| 233 |
+
"C132",
|
| 234 |
+
"C132",
|
| 235 |
+
"C132",
|
| 236 |
+
"C138",
|
| 237 |
+
"C138",
|
| 238 |
+
"C138",
|
| 239 |
+
"C138",
|
| 240 |
+
"C138",
|
| 241 |
+
"C140",
|
| 242 |
+
"C140",
|
| 243 |
+
"C140",
|
| 244 |
+
"C140",
|
| 245 |
+
"C140",
|
| 246 |
+
"C140",
|
| 247 |
+
"C140",
|
| 248 |
+
"C140",
|
| 249 |
+
"C141",
|
| 250 |
+
"C141",
|
| 251 |
+
"C141",
|
| 252 |
+
"C141",
|
| 253 |
+
"C142",
|
| 254 |
+
"C145",
|
| 255 |
+
"C145",
|
| 256 |
+
"C145",
|
| 257 |
+
"C145",
|
| 258 |
+
"C145",
|
| 259 |
+
"C145",
|
| 260 |
+
"C146",
|
| 261 |
+
"C146",
|
| 262 |
+
"C146",
|
| 263 |
+
"C146",
|
| 264 |
+
"C146",
|
| 265 |
+
"C146",
|
| 266 |
+
"C146",
|
| 267 |
+
"C146",
|
| 268 |
+
"C147",
|
| 269 |
+
"C147",
|
| 270 |
+
"C147",
|
| 271 |
+
"C161",
|
| 272 |
+
"C164",
|
| 273 |
+
"C167",
|
| 274 |
+
"C168",
|
| 275 |
+
"C168",
|
| 276 |
+
"C168",
|
| 277 |
+
"C168",
|
| 278 |
+
"C168",
|
| 279 |
+
"C168",
|
| 280 |
+
"C169",
|
| 281 |
+
"C169",
|
| 282 |
+
"C169",
|
| 283 |
+
"C169",
|
| 284 |
+
"C169",
|
| 285 |
+
"C187",
|
| 286 |
+
"C187",
|
| 287 |
+
"C187",
|
| 288 |
+
"C187",
|
| 289 |
+
"C187",
|
| 290 |
+
"C187",
|
| 291 |
+
"C190",
|
| 292 |
+
"C190",
|
| 293 |
+
"C190",
|
| 294 |
+
"C190",
|
| 295 |
+
"C190",
|
| 296 |
+
"C190",
|
| 297 |
+
"C190",
|
| 298 |
+
"C190",
|
| 299 |
+
"C193",
|
| 300 |
+
"C195",
|
| 301 |
+
"C197",
|
| 302 |
+
"C212",
|
| 303 |
+
"C214",
|
| 304 |
+
"C234",
|
| 305 |
+
"C237",
|
| 306 |
+
"C238",
|
| 307 |
+
"C240",
|
| 308 |
+
"C246",
|
| 309 |
+
"C251"
|
| 310 |
+
],
|
| 311 |
+
"excluded_sample_ids": [
|
| 312 |
+
"C137_1901",
|
| 313 |
+
"C137_2502",
|
| 314 |
+
"C170_0202",
|
| 315 |
+
"C170_0402",
|
| 316 |
+
"C170_0403",
|
| 317 |
+
"C170_1205",
|
| 318 |
+
"C33_1601",
|
| 319 |
+
"C33_1901",
|
| 320 |
+
"C33_2601",
|
| 321 |
+
"C36_1704",
|
| 322 |
+
"C36_2104"
|
| 323 |
+
],
|
| 324 |
+
"seed": null,
|
| 325 |
+
"selection_audit": [
|
| 326 |
+
{
|
| 327 |
+
"donor_id": "C152",
|
| 328 |
+
"assigned_stratum": false,
|
| 329 |
+
"selected_sample_id": "C152_0405",
|
| 330 |
+
"candidates": [
|
| 331 |
+
{
|
| 332 |
+
"sample_id": "C152_0405",
|
| 333 |
+
"time_value": 737549.0,
|
| 334 |
+
"time_raw": "04/05/2020",
|
| 335 |
+
"time_field": "sample_date",
|
| 336 |
+
"group": "covid_negative"
|
| 337 |
+
}
|
| 338 |
+
]
|
| 339 |
+
},
|
| 340 |
+
{
|
| 341 |
+
"donor_id": "C137",
|
| 342 |
+
"assigned_stratum": false,
|
| 343 |
+
"selected_sample_id": "C137_3004",
|
| 344 |
+
"candidates": [
|
| 345 |
+
{
|
| 346 |
+
"sample_id": "C137_3004",
|
| 347 |
+
"time_value": 737545.0,
|
| 348 |
+
"time_raw": "30/04/2020",
|
| 349 |
+
"time_field": "sample_date",
|
| 350 |
+
"group": "covid_negative"
|
| 351 |
+
},
|
| 352 |
+
{
|
| 353 |
+
"sample_id": "C137_2502",
|
| 354 |
+
"time_value": 737846.0,
|
| 355 |
+
"time_raw": "25/02/2021",
|
| 356 |
+
"time_field": "sample_date",
|
| 357 |
+
"group": "recovery"
|
| 358 |
+
}
|
| 359 |
+
]
|
| 360 |
+
},
|
| 361 |
+
{
|
| 362 |
+
"donor_id": "C33",
|
| 363 |
+
"assigned_stratum": true,
|
| 364 |
+
"selected_sample_id": "C33_1401",
|
| 365 |
+
"candidates": [
|
| 366 |
+
{
|
| 367 |
+
"sample_id": "C33_1401",
|
| 368 |
+
"time_value": 737804.0,
|
| 369 |
+
"time_raw": "14/01/2021",
|
| 370 |
+
"time_field": "sample_date",
|
| 371 |
+
"group": "covid_positive"
|
| 372 |
+
},
|
| 373 |
+
{
|
| 374 |
+
"sample_id": "C33_1601",
|
| 375 |
+
"time_value": 737806.0,
|
| 376 |
+
"time_raw": "16/01/2021",
|
| 377 |
+
"time_field": "sample_date",
|
| 378 |
+
"group": "covid_positive"
|
| 379 |
+
},
|
| 380 |
+
{
|
| 381 |
+
"sample_id": "C33_1901",
|
| 382 |
+
"time_value": 737809.0,
|
| 383 |
+
"time_raw": "19/01/2021",
|
| 384 |
+
"time_field": "sample_date",
|
| 385 |
+
"group": "covid_positive"
|
| 386 |
+
}
|
| 387 |
+
]
|
| 388 |
+
},
|
| 389 |
+
{
|
| 390 |
+
"donor_id": "C170",
|
| 391 |
+
"assigned_stratum": true,
|
| 392 |
+
"selected_sample_id": "C170_2301",
|
| 393 |
+
"candidates": [
|
| 394 |
+
{
|
| 395 |
+
"sample_id": "C170_2301",
|
| 396 |
+
"time_value": 737813.0,
|
| 397 |
+
"time_raw": "23/01/2021",
|
| 398 |
+
"time_field": "sample_date",
|
| 399 |
+
"group": "covid_positive"
|
| 400 |
+
},
|
| 401 |
+
{
|
| 402 |
+
"sample_id": "C170_0202",
|
| 403 |
+
"time_value": 737823.0,
|
| 404 |
+
"time_raw": "02/02/2021",
|
| 405 |
+
"time_field": "sample_date",
|
| 406 |
+
"group": "covid_positive"
|
| 407 |
+
},
|
| 408 |
+
{
|
| 409 |
+
"sample_id": "C170_0402",
|
| 410 |
+
"time_value": 737825.0,
|
| 411 |
+
"time_raw": "04/02/2021",
|
| 412 |
+
"time_field": "sample_date",
|
| 413 |
+
"group": "covid_positive"
|
| 414 |
+
}
|
| 415 |
+
]
|
| 416 |
+
},
|
| 417 |
+
{
|
| 418 |
+
"donor_id": "C36",
|
| 419 |
+
"assigned_stratum": true,
|
| 420 |
+
"selected_sample_id": "C36_1504",
|
| 421 |
+
"candidates": [
|
| 422 |
+
{
|
| 423 |
+
"sample_id": "C36_1504",
|
| 424 |
+
"time_value": 737530.0,
|
| 425 |
+
"time_raw": "15/04/2020",
|
| 426 |
+
"time_field": "sample_date",
|
| 427 |
+
"group": "covid_positive"
|
| 428 |
+
},
|
| 429 |
+
{
|
| 430 |
+
"sample_id": "C36_1704",
|
| 431 |
+
"time_value": 737532.0,
|
| 432 |
+
"time_raw": "17/04/2020",
|
| 433 |
+
"time_field": "sample_date",
|
| 434 |
+
"group": "covid_positive"
|
| 435 |
+
},
|
| 436 |
+
{
|
| 437 |
+
"sample_id": "C36_2104",
|
| 438 |
+
"time_value": 737536.0,
|
| 439 |
+
"time_raw": "21/04/2020",
|
| 440 |
+
"time_field": "sample_date",
|
| 441 |
+
"group": "covid_positive"
|
| 442 |
+
}
|
| 443 |
+
]
|
| 444 |
+
}
|
| 445 |
+
],
|
| 446 |
+
"sha256": "b428e852548e0e33140289d0bf5a4c7d8d6a642afa0d3a233103112bbf241137"
|
| 447 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261012T130738Z-strictpairs-implementation/diffusion/dataset/server_1/model8/plans/paper_figures_strictpairs_20261012/archive/20261012T130738Z-strictpairs-implementation/snapshot/protocol/splits/ji2025_chili/disease/draw0/support.json
ADDED
|
@@ -0,0 +1,177 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "ji2025_chili",
|
| 4 |
+
"design": "disease_existing_draw",
|
| 5 |
+
"unit": "draw0_n5",
|
| 6 |
+
"n_pairs": 5,
|
| 7 |
+
"train_sample_ids": [
|
| 8 |
+
"N150_BC",
|
| 9 |
+
"N018_BC",
|
| 10 |
+
"N032_AC",
|
| 11 |
+
"N012_TOL",
|
| 12 |
+
"N138_TOL"
|
| 13 |
+
],
|
| 14 |
+
"train_donor_ids": [
|
| 15 |
+
"N150",
|
| 16 |
+
"N018",
|
| 17 |
+
"N032",
|
| 18 |
+
"N012",
|
| 19 |
+
"N138"
|
| 20 |
+
],
|
| 21 |
+
"test_sample_ids": [
|
| 22 |
+
"N064_TOL",
|
| 23 |
+
"N064_FU1",
|
| 24 |
+
"N038_BC",
|
| 25 |
+
"N038_AC",
|
| 26 |
+
"N055_AC",
|
| 27 |
+
"N136_TOL",
|
| 28 |
+
"N136_FU1",
|
| 29 |
+
"N128_BC",
|
| 30 |
+
"N128_AC",
|
| 31 |
+
"N129_BC",
|
| 32 |
+
"N129_AC",
|
| 33 |
+
"N147_TOL",
|
| 34 |
+
"N158_AC",
|
| 35 |
+
"N159_BC",
|
| 36 |
+
"N001_TOL",
|
| 37 |
+
"N001_FU1",
|
| 38 |
+
"N002_TOL",
|
| 39 |
+
"N002_FU1",
|
| 40 |
+
"N005_BC",
|
| 41 |
+
"N005_AC",
|
| 42 |
+
"N022_TOL",
|
| 43 |
+
"N022_FU1",
|
| 44 |
+
"N035_TOL",
|
| 45 |
+
"N043_TOL",
|
| 46 |
+
"N043_FU1"
|
| 47 |
+
],
|
| 48 |
+
"test_donor_ids": [
|
| 49 |
+
"N064",
|
| 50 |
+
"N064",
|
| 51 |
+
"N038",
|
| 52 |
+
"N038",
|
| 53 |
+
"N055",
|
| 54 |
+
"N136",
|
| 55 |
+
"N136",
|
| 56 |
+
"N128",
|
| 57 |
+
"N128",
|
| 58 |
+
"N129",
|
| 59 |
+
"N129",
|
| 60 |
+
"N147",
|
| 61 |
+
"N158",
|
| 62 |
+
"N159",
|
| 63 |
+
"N001",
|
| 64 |
+
"N001",
|
| 65 |
+
"N002",
|
| 66 |
+
"N002",
|
| 67 |
+
"N005",
|
| 68 |
+
"N005",
|
| 69 |
+
"N022",
|
| 70 |
+
"N022",
|
| 71 |
+
"N035",
|
| 72 |
+
"N043",
|
| 73 |
+
"N043"
|
| 74 |
+
],
|
| 75 |
+
"excluded_sample_ids": [
|
| 76 |
+
"N012_FU1",
|
| 77 |
+
"N018_AC",
|
| 78 |
+
"N032_BC",
|
| 79 |
+
"N138_FU1",
|
| 80 |
+
"N150_AC"
|
| 81 |
+
],
|
| 82 |
+
"seed": null,
|
| 83 |
+
"selection_audit": [
|
| 84 |
+
{
|
| 85 |
+
"donor_id": "N150",
|
| 86 |
+
"assigned_stratum": false,
|
| 87 |
+
"selected_sample_id": "N150_BC",
|
| 88 |
+
"candidates": [
|
| 89 |
+
{
|
| 90 |
+
"sample_id": "N150_BC",
|
| 91 |
+
"time_value": 0.0,
|
| 92 |
+
"time_raw": "BC",
|
| 93 |
+
"time_field": "timepoint",
|
| 94 |
+
"group": "BC"
|
| 95 |
+
}
|
| 96 |
+
]
|
| 97 |
+
},
|
| 98 |
+
{
|
| 99 |
+
"donor_id": "N018",
|
| 100 |
+
"assigned_stratum": false,
|
| 101 |
+
"selected_sample_id": "N018_BC",
|
| 102 |
+
"candidates": [
|
| 103 |
+
{
|
| 104 |
+
"sample_id": "N018_BC",
|
| 105 |
+
"time_value": 0.0,
|
| 106 |
+
"time_raw": "BC",
|
| 107 |
+
"time_field": "timepoint",
|
| 108 |
+
"group": "BC"
|
| 109 |
+
},
|
| 110 |
+
{
|
| 111 |
+
"sample_id": "N018_AC",
|
| 112 |
+
"time_value": 1.0,
|
| 113 |
+
"time_raw": "AC",
|
| 114 |
+
"time_field": "timepoint",
|
| 115 |
+
"group": "AC"
|
| 116 |
+
}
|
| 117 |
+
]
|
| 118 |
+
},
|
| 119 |
+
{
|
| 120 |
+
"donor_id": "N032",
|
| 121 |
+
"assigned_stratum": false,
|
| 122 |
+
"selected_sample_id": "N032_AC",
|
| 123 |
+
"candidates": [
|
| 124 |
+
{
|
| 125 |
+
"sample_id": "N032_AC",
|
| 126 |
+
"time_value": 1.0,
|
| 127 |
+
"time_raw": "AC",
|
| 128 |
+
"time_field": "timepoint",
|
| 129 |
+
"group": "AC"
|
| 130 |
+
}
|
| 131 |
+
]
|
| 132 |
+
},
|
| 133 |
+
{
|
| 134 |
+
"donor_id": "N012",
|
| 135 |
+
"assigned_stratum": true,
|
| 136 |
+
"selected_sample_id": "N012_TOL",
|
| 137 |
+
"candidates": [
|
| 138 |
+
{
|
| 139 |
+
"sample_id": "N012_TOL",
|
| 140 |
+
"time_value": 0.0,
|
| 141 |
+
"time_raw": "TOL",
|
| 142 |
+
"time_field": "timepoint",
|
| 143 |
+
"group": "TOL"
|
| 144 |
+
},
|
| 145 |
+
{
|
| 146 |
+
"sample_id": "N012_FU1",
|
| 147 |
+
"time_value": 1.0,
|
| 148 |
+
"time_raw": "FU1",
|
| 149 |
+
"time_field": "timepoint",
|
| 150 |
+
"group": "FU1"
|
| 151 |
+
}
|
| 152 |
+
]
|
| 153 |
+
},
|
| 154 |
+
{
|
| 155 |
+
"donor_id": "N138",
|
| 156 |
+
"assigned_stratum": true,
|
| 157 |
+
"selected_sample_id": "N138_TOL",
|
| 158 |
+
"candidates": [
|
| 159 |
+
{
|
| 160 |
+
"sample_id": "N138_TOL",
|
| 161 |
+
"time_value": 0.0,
|
| 162 |
+
"time_raw": "TOL",
|
| 163 |
+
"time_field": "timepoint",
|
| 164 |
+
"group": "TOL"
|
| 165 |
+
},
|
| 166 |
+
{
|
| 167 |
+
"sample_id": "N138_FU1",
|
| 168 |
+
"time_value": 1.0,
|
| 169 |
+
"time_raw": "FU1",
|
| 170 |
+
"time_field": "timepoint",
|
| 171 |
+
"group": "FU1"
|
| 172 |
+
}
|
| 173 |
+
]
|
| 174 |
+
}
|
| 175 |
+
],
|
| 176 |
+
"sha256": "b361deccb2e2b5da9fc4fcf8d3b558dc4ebefa14390ebba15e419ff8c351b9b8"
|
| 177 |
+
}
|