Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/scanvi_labels_lora3k4_raw_s04_f01common/labels.manifest.json

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+  "method": "generated_GSE198533_all19_lora3study_lora3k4_raw_s04",
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+  "training_source": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/aifi_scanvi_rebuild_20260916/reference/aifi_reference_f01common.h5ad",
+  "target_truth_used_for_fitting": false,
+  "classifier": "aifi_scanvi_rebuild_20260916_frozen_predict[aifi_scanvi_f01common_v1]",
+  "labels": [
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+    "Monocyte",
+    "NK cell",
+    "DC",
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+    "CD14 monocyte",
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+    "CD56bright NK cell",
+    "CD56dim NK cell",
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+    "DN T cell",
+    "Effector B cell",
+    "Erythrocyte",
+    "ILC",
+    "Intermediate monocyte",
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+    "Memory CD8 T cell",
+    "Naive B cell",
+    "Naive CD4 T cell",
+    "Naive CD8 T cell",
+    "Plasma cell",
+    "Platelet",
+    "Progenitor cell",
+    "Proliferating NK cell",
+    "Proliferating T cell",
+    "Transitional B cell",
+    "Treg",
+    "cDC1",
+    "cDC2",
+    "gdT",
+    "pDC"
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+  "n_cells": 95000,
+  "n_genes": 1005,
+  "note": "Evaluation-only annotation with a frozen AIFI scANVI (zero query-training epochs); L1 outside PBMC5 -> Other, never dropped.",
+  "label_source_column": "AIFI_L2 (reference) -> AIFI_L2_TO_L1 -> PBMC5 + Other",
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+  "subset": false,
+  "evaluator_aligned": true,
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+  "readout": {
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+    "input_matrix_key": "generated_counts",
+    "input_n_cells": 95000,
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+    "library_size_handling": "no rescaling (library_scale=1.0): E[library] = generated library",
+    "method_name": "generated_GSE198533_all19_lora3study_lora3k4_raw_s04",
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+    "n_genes": 6000,
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+    "unlabeled_category": "Unknown"
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+  "model": {
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+    "model_pt_sha256": "bf3655899e5abee435340fc008656c4a17342da0f30b70cfd43de8e9223e1930",
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+    "held_out_summary": {
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+      "Erythrocyte": 423,
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+      "Memory CD4 T cell": 11638,
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+      "Naive B cell": 4124,
+      "Intermediate monocyte": 3881,
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+      "CD16 monocyte": 1888,
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+      "pDC": 261,
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+      "Plasma cell": 119,
+      "Progenitor cell": 56,
+      "cDC1": 48,
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+  },
+  "confidence": {
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+    "mean_l1_mass": 0.983802318572998,
+    "frac_l2_max_prob_ge_0.5": 0.975
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+  "timings_s": {
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+    "total": 1.5
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+  "versions": {
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+    "torch": "2.11.0+cu130",
+    "anndata": "0.12.19"
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+  "device": "cpu",
+  "created_at_utc": "2026-10-04T06:38:02.083709+00:00"
+}

paper-releases/pbisc-diffusion/updates/20261004T065028Z-behcet-c1q-k4000-corpus/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/work/scanvi_labels_lora3k4_raw_s04_f01common/labels.parquet

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