Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T003810Z-behcet-pair-recovery/diffusion/dataset/server_1/model8/plans/behcet_pair_recovery_20261004/out/match_gene_view.csv

@@ -0,0 +1,17 @@
+sc_sample,best_bulk,gene,bulk_log2cpm,sc_log2cpm,bulk_rank_among_19,sc_rank_among_8
+PBMC_BD_2,BDV4,S100B,4.344121848083959,6.6095177768645526,2,1
+PBMC_BD_2,BDV4,FOLR3,6.518429320800352,5.892085341982496,2,1
+PBMC_BD_2,BDV4,ZNF683,5.994806142024388,5.505723255914175,2,1
+PBMC_BD_2,BDV4,XRRA1,4.761570434848902,5.580914349167376,1,1
+PBMC_BD_2,BDV4,PF4V1,0.9911191297389697,0.5715862070090797,19,8
+PBMC_BD_2,BDV4,HLA-DQB2,3.4947168780179365,3.249102699262734,1,1
+PBMC_BD_3,BDV5,TMEM176A,6.431315137527618,5.587515299953161,2,1
+PBMC_BD_3,BDV5,PRSS21,1.1684896299516303,0.4435823982230863,19,8
+PBMC_BD_3,BDV5,XRRA1,3.016061209606244,2.9707737160573062,19,8
+PBMC_BD_3,BDV5,MARCO,5.535218852591488,4.735000685475747,2,1
+PBMC_BD_3,BDV5,AGAP1,5.386668351876237,2.5596604395929243,2,1
+PBMC_BD_4,BDV6,MDGA1,0.2889799328345399,0.0,19,8
+PBMC_BD_4,BDV6,ZNF683,0.8731520463209298,0.8200309084394954,19,8
+PBMC_BD_4,BDV6,LGALS2,7.390866069031707,8.141238841350555,1,1
+PBMC_BD_4,BDV6,GLB1L,3.7581272604172575,2.199027727079863,1,1
+PBMC_HC_1,HC6,FOLR3,2.083711045637356,1.2650324126486767,19,8

paper-releases/pbisc-diffusion/updates/20261004T003810Z-behcet-pair-recovery/diffusion/dataset/server_1/model8/plans/behcet_pair_recovery_20261004/out/pairs_recovered.csv

@@ -0,0 +1,4 @@
+sc_sample,sc_gsm,bulk_sample,bulk_gsm,age,rules_calling_it,rules,primary_rule_called,primary_r_best,tier
+PBMC_BD_2,GSM5953768,BDV4,GSM5951805,31,8,9,True,0.7842087546676991,expression_identity_called_by_primary_rule+age_equal
+PBMC_BD_3,GSM5953769,BDV5,GSM5951806,58,6,9,False,0.555423006090796,expression_best_and_mutual_in_all_rules+age_equal
+PBMC_BD_4,GSM5953770,BDV6,GSM5951807,41,8,9,True,0.7455896536503368,expression_identity_called_by_primary_rule+age_equal

paper-releases/pbisc-diffusion/updates/20261004T003810Z-behcet-pair-recovery/diffusion/dataset/server_1/model8/plans/behcet_pair_recovery_20261004/out/rule_agreement.csv

@@ -0,0 +1,10 @@
+genes,stat,called
+G100,dc_margin,PBMC_BD_2->BDV4;PBMC_BD_3->BDV5;PBMC_BD_4->BDV6
+G100,margin_z,PBMC_BD_2->BDV4;PBMC_BD_3->BDV5;PBMC_BD_4->BDV6;PBMC_HC_1->HC6
+G100,r_best,PBMC_BD_2->BDV4;PBMC_BD_4->BDV6
+G200,dc_margin,PBMC_BD_2->BDV4;PBMC_BD_3->BDV5;PBMC_BD_4->BDV6
+G200,margin_z,PBMC_BD_2->BDV4;PBMC_BD_3->BDV5;PBMC_BD_4->BDV6;PBMC_HC_1->HC6
+G200,r_best,PBMC_BD_2->BDV4
+G50,dc_margin,PBMC_BD_2->BDV4;PBMC_BD_3->BDV5;PBMC_BD_4->BDV6
+G50,margin_z,PBMC_BD_3->BDV5;PBMC_BD_4->BDV6;PBMC_HC_1->HC6
+G50,r_best,PBMC_BD_2->BDV4;PBMC_BD_4->BDV6

paper-releases/pbisc-diffusion/updates/20261004T003810Z-behcet-pair-recovery/diffusion/dataset/server_1/model8/plans/behcet_pair_recovery_20261004/out/sex_check.csv

@@ -0,0 +1,28 @@
+sample,modality,group,chrY_cpm,cells
+HC1,bulk,HC,991.9093561268455,
+HC2,bulk,HC,938.5612882546311,
+HC3,bulk,HC,1000.8744648079928,
+HC4,bulk,HC,806.2769328342348,
+HC5,bulk,HC,917.0119197301858,
+HC6,bulk,HC,1149.723557289384,
+HC7,bulk,HC,993.3071401491638,
+HC8,bulk,HC,1026.6471951303422,
+HC9,bulk,HC,988.3811975344191,
+HC10,bulk,HC,967.0238429123684,
+BDU1,bulk,BD,915.2449664183324,
+BDU2,bulk,BD,783.6411392828277,
+BDU3,bulk,BD,864.1580992141791,
+BDV1,bulk,BD,849.3909360705264,
+BDV2,bulk,BD,792.3953220697504,
+BDV3,bulk,BD,796.4293720236413,
+BDV4,bulk,BD,890.435273208062,
+BDV5,bulk,BD,831.2367141648272,
+BDV6,bulk,BD,969.0507006794332,
+PBMC_BD_1,sc,BD,1072.2533251383536,4670.0
+PBMC_BD_2,sc,BD,1010.5252431743482,6304.0
+PBMC_BD_3,sc,BD,885.5437573448836,3508.0
+PBMC_BD_4,sc,BD,943.4389424015894,6823.0
+PBMC_HC_1,sc,HC,0.35083152333503254,2453.0
+PBMC_HC_2,sc,HC,0.802656579235515,5745.0
+PBMC_HC_3,sc,HC,969.4879641434213,6503.0
+PBMC_HC_4,sc,HC,997.0481058509805,5596.0