Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/cv2/SPLIT.json

@@ -0,0 +1,71 @@
+{
+ "dataset": "ji2025_chili",
+ "kind": "cv",
+ "idx": 2,
+ "reference": [
+  "N064_TOL",
+  "N064_FU1",
+  "N032_AC",
+  "N038_BC",
+  "N038_AC",
+  "N136_TOL",
+  "N136_FU1",
+  "N138_TOL",
+  "N138_FU1",
+  "N128_BC",
+  "N128_AC",
+  "N158_AC",
+  "N159_BC",
+  "N005_BC",
+  "N005_AC",
+  "N012_TOL",
+  "N012_FU1",
+  "N018_BC",
+  "N018_AC",
+  "N022_TOL",
+  "N022_FU1",
+  "N035_TOL",
+  "N043_TOL",
+  "N043_FU1",
+  "N129_BC",
+  "N129_AC",
+  "N147_TOL"
+ ],
+ "mixture": [
+  "N055_AC",
+  "N150_BC",
+  "N001_TOL",
+  "N001_FU1",
+  "N002_TOL",
+  "N002_FU1"
+ ],
+ "run_json_check": true,
+ "n_train_rows": 24,
+ "n_inner_val_rows": 3,
+ "n_reference_samples": 27,
+ "n_mixture_samples": 6,
+ "reference_cells": 96102,
+ "states": 29,
+ "states_merged_minor": 0,
+ "types": [
+  "B cell",
+  "DC",
+  "Monocyte",
+  "NK cell",
+  "Other",
+  "T cell"
+ ],
+ "missing_types": [],
+ "bp_axis_genes": 5736,
+ "genes_kept": 5730,
+ "genes_dropped_not_bulk_valid": 0,
+ "genes_dropped_zero_reference": 6,
+ "aggregates_sha256": "ab2d1c650eea9381badef93975c96714399d8f538655888c433321af04663247",
+ "files": {
+  "reference.tsv.gz": "dc0743838e4e6a0009e23b792e2778a7548551e10cbbe01335159457e9295c3c",
+  "state_types.tsv": "b64774484d133788cceacdb4e4e79d9c454ba853d41f9207bff657770572599e",
+  "mixture.tsv.gz": "75532758cd4d3bffc531fcde2c16d0840a20a337cc85a586e4b765642660c7ea"
+ },
+ "tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/cv2/state_types.tsv

@@ -0,0 +1,30 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	495
+B cell|Memory B cell	B cell	1606
+B cell|Naive B cell	B cell	2270
+B cell|Plasma cell	B cell	534
+B cell|Transitional B cell	B cell	648
+DC|ASDC	DC	46
+DC|cDC1	DC	34
+DC|cDC2	DC	1027
+DC|pDC	DC	342
+Monocyte|CD14 monocyte	Monocyte	20574
+Monocyte|CD16 monocyte	Monocyte	2478
+Monocyte|Intermediate monocyte	Monocyte	1601
+NK cell|CD56bright NK cell	NK cell	1155
+NK cell|CD56dim NK cell	NK cell	9695
+NK cell|Proliferating NK cell	NK cell	3163
+Other|Erythrocyte	Other	571
+Other|ILC	Other	332
+Other|Platelet	Other	1484
+Other|Progenitor cell	Other	553
+T cell|CD8aa	T cell	854
+T cell|DN T cell	T cell	1953
+T cell|MAIT	T cell	508
+T cell|Memory CD4 T cell	T cell	10319
+T cell|Memory CD8 T cell	T cell	8034
+T cell|Naive CD4 T cell	T cell	16200
+T cell|Naive CD8 T cell	T cell	1781
+T cell|Proliferating T cell	T cell	596
+T cell|Treg	T cell	5521
+T cell|gdT	T cell	1728

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/cv2_full/SPLIT.json

@@ -0,0 +1,72 @@
+{
+ "dataset": "ji2025_chili",
+ "kind": "cv",
+ "idx": 2,
+ "reference": [
+  "N064_TOL",
+  "N064_FU1",
+  "N032_AC",
+  "N038_BC",
+  "N038_AC",
+  "N136_TOL",
+  "N136_FU1",
+  "N138_TOL",
+  "N138_FU1",
+  "N128_BC",
+  "N128_AC",
+  "N158_AC",
+  "N159_BC",
+  "N005_BC",
+  "N005_AC",
+  "N012_TOL",
+  "N012_FU1",
+  "N018_BC",
+  "N018_AC",
+  "N022_TOL",
+  "N022_FU1",
+  "N035_TOL",
+  "N043_TOL",
+  "N043_FU1",
+  "N129_BC",
+  "N129_AC",
+  "N147_TOL"
+ ],
+ "mixture": [
+  "N055_AC",
+  "N150_BC",
+  "N001_TOL",
+  "N001_FU1",
+  "N002_TOL",
+  "N002_FU1"
+ ],
+ "run_json_check": true,
+ "n_train_rows": 24,
+ "n_inner_val_rows": 3,
+ "n_reference_samples": 27,
+ "n_mixture_samples": 6,
+ "reference_cells": 96102,
+ "states": 29,
+ "states_merged_minor": 0,
+ "types": [
+  "B cell",
+  "DC",
+  "Monocyte",
+  "NK cell",
+  "Other",
+  "T cell"
+ ],
+ "missing_types": [],
+ "bp_axis_genes": 18172,
+ "genes_kept": 16528,
+ "genes_dropped_not_bulk_valid": 30,
+ "genes_dropped_zero_reference": 1614,
+ "gene_mode": "full",
+ "aggregates_sha256": "0dfbed64479372c0b0cca489dd54f65c6290d9a89da4f1a09d4accaa7140d35f",
+ "files": {
+  "reference.tsv.gz": "cbcaf9b7bb7c149a58e6ae8b87350f0e6f73c905fe254cdb91d185a176c46a24",
+  "state_types.tsv": "b64774484d133788cceacdb4e4e79d9c454ba853d41f9207bff657770572599e",
+  "mixture.tsv.gz": "2e7caeaa8fdb9fbfbe398ece1f231cc6ce9abd74ab138cbd3090609829d463e5"
+ },
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ji2025_chili/cv2_full/state_types.tsv

@@ -0,0 +1,30 @@
+state	type	n_cells
+B cell|Effector B cell	B cell	495
+B cell|Memory B cell	B cell	1606
+B cell|Naive B cell	B cell	2270
+B cell|Plasma cell	B cell	534
+B cell|Transitional B cell	B cell	648
+DC|ASDC	DC	46
+DC|cDC1	DC	34
+DC|cDC2	DC	1027
+DC|pDC	DC	342
+Monocyte|CD14 monocyte	Monocyte	20574
+Monocyte|CD16 monocyte	Monocyte	2478
+Monocyte|Intermediate monocyte	Monocyte	1601
+NK cell|CD56bright NK cell	NK cell	1155
+NK cell|CD56dim NK cell	NK cell	9695
+NK cell|Proliferating NK cell	NK cell	3163
+Other|Erythrocyte	Other	571
+Other|ILC	Other	332
+Other|Platelet	Other	1484
+Other|Progenitor cell	Other	553
+T cell|CD8aa	T cell	854
+T cell|DN T cell	T cell	1953
+T cell|MAIT	T cell	508
+T cell|Memory CD4 T cell	T cell	10319
+T cell|Memory CD8 T cell	T cell	8034
+T cell|Naive CD4 T cell	T cell	16200
+T cell|Naive CD8 T cell	T cell	1781
+T cell|Proliferating T cell	T cell	596
+T cell|Treg	T cell	5521
+T cell|gdT	T cell	1728