Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/cv3/SPLIT.json +120 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/cv3/state_types.tsv +30 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/cv3_full/SPLIT.json +121 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/cv3_full/state_types.tsv +30 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/cv3/SPLIT.json
ADDED
|
@@ -0,0 +1,120 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset": "ye2026_sepsis",
|
| 3 |
+
"kind": "cv",
|
| 4 |
+
"idx": 3,
|
| 5 |
+
"reference": [
|
| 6 |
+
"Abd-PS04",
|
| 7 |
+
"Abd-PS05",
|
| 8 |
+
"Abd-PS07",
|
| 9 |
+
"Abd-PS19",
|
| 10 |
+
"Abd-PS23",
|
| 11 |
+
"Abd-PS27",
|
| 12 |
+
"Abd-S120",
|
| 13 |
+
"Abd-S123",
|
| 14 |
+
"Abd-S156",
|
| 15 |
+
"Abd-S39",
|
| 16 |
+
"Abd-S42",
|
| 17 |
+
"Abd-S47",
|
| 18 |
+
"Abd-S54",
|
| 19 |
+
"Abd-S57",
|
| 20 |
+
"Abd-S66",
|
| 21 |
+
"Abd-S79",
|
| 22 |
+
"Abd-S98",
|
| 23 |
+
"HC05",
|
| 24 |
+
"HC07",
|
| 25 |
+
"HC09",
|
| 26 |
+
"HC13",
|
| 27 |
+
"HC16",
|
| 28 |
+
"IC10",
|
| 29 |
+
"IC15",
|
| 30 |
+
"IC16",
|
| 31 |
+
"IC19",
|
| 32 |
+
"PHC02",
|
| 33 |
+
"PHC03",
|
| 34 |
+
"PHC05",
|
| 35 |
+
"PIC02",
|
| 36 |
+
"PIC04",
|
| 37 |
+
"PIC05",
|
| 38 |
+
"Res-PS03",
|
| 39 |
+
"Res-PS12",
|
| 40 |
+
"Res-PS22",
|
| 41 |
+
"Res-PS25",
|
| 42 |
+
"Res-PS26",
|
| 43 |
+
"Res-S10",
|
| 44 |
+
"Res-S139",
|
| 45 |
+
"Res-S146",
|
| 46 |
+
"Res-S164",
|
| 47 |
+
"Res-S166",
|
| 48 |
+
"Res-S174",
|
| 49 |
+
"Res-S177",
|
| 50 |
+
"Res-S184",
|
| 51 |
+
"Res-S19",
|
| 52 |
+
"Res-S26",
|
| 53 |
+
"Res-S77",
|
| 54 |
+
"Res-S87",
|
| 55 |
+
"Skin-S140",
|
| 56 |
+
"Skin-S142",
|
| 57 |
+
"Skin-S152",
|
| 58 |
+
"Skin-S43",
|
| 59 |
+
"Skin-S46",
|
| 60 |
+
"Skin-S74",
|
| 61 |
+
"Uri-S147",
|
| 62 |
+
"Uri-S157",
|
| 63 |
+
"Uri-S93",
|
| 64 |
+
"Abd-PS20",
|
| 65 |
+
"HC01",
|
| 66 |
+
"IC23",
|
| 67 |
+
"PHC01",
|
| 68 |
+
"Res-S127",
|
| 69 |
+
"Res-S150",
|
| 70 |
+
"Res-S40",
|
| 71 |
+
"Skin-S52"
|
| 72 |
+
],
|
| 73 |
+
"mixture": [
|
| 74 |
+
"Abd-S102",
|
| 75 |
+
"Abd-S103",
|
| 76 |
+
"Abd-S51",
|
| 77 |
+
"Abd-S83",
|
| 78 |
+
"HC12",
|
| 79 |
+
"IC22",
|
| 80 |
+
"PIC01",
|
| 81 |
+
"Res-PS02",
|
| 82 |
+
"Res-PS16",
|
| 83 |
+
"Res-PS21",
|
| 84 |
+
"Res-S125",
|
| 85 |
+
"Res-S136",
|
| 86 |
+
"Res-S149",
|
| 87 |
+
"Skin-S38",
|
| 88 |
+
"Uri-S134",
|
| 89 |
+
"Uri-S20"
|
| 90 |
+
],
|
| 91 |
+
"run_json_check": true,
|
| 92 |
+
"n_train_rows": 58,
|
| 93 |
+
"n_inner_val_rows": 8,
|
| 94 |
+
"n_reference_samples": 66,
|
| 95 |
+
"n_mixture_samples": 16,
|
| 96 |
+
"reference_cells": 485283,
|
| 97 |
+
"states": 29,
|
| 98 |
+
"states_merged_minor": 0,
|
| 99 |
+
"types": [
|
| 100 |
+
"B cell",
|
| 101 |
+
"DC",
|
| 102 |
+
"Monocyte",
|
| 103 |
+
"NK cell",
|
| 104 |
+
"Other",
|
| 105 |
+
"T cell"
|
| 106 |
+
],
|
| 107 |
+
"missing_types": [],
|
| 108 |
+
"bp_axis_genes": 5959,
|
| 109 |
+
"genes_kept": 5893,
|
| 110 |
+
"genes_dropped_not_bulk_valid": 0,
|
| 111 |
+
"genes_dropped_zero_reference": 66,
|
| 112 |
+
"aggregates_sha256": "d38afdb00f5616ada109babfb6fc0f16bc37b33a434807d263d0163895e1f9de",
|
| 113 |
+
"files": {
|
| 114 |
+
"reference.tsv.gz": "acd521f9895387eb4da7638e1b856dbb17fc8ace899cf9cdeb7e469ddfd29dc7",
|
| 115 |
+
"state_types.tsv": "650bad37dd3daac4bc0ef95973789c46c54d07fd1a101c07e874646446b33d5f",
|
| 116 |
+
"mixture.tsv.gz": "c664a050b2ac029c286e1076c66301871e3571d353d9d88fb1e03749a782faa9"
|
| 117 |
+
},
|
| 118 |
+
"tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
|
| 119 |
+
"common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
|
| 120 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/cv3/state_types.tsv
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
state type n_cells
|
| 2 |
+
B cell|Effector B cell B cell 8037
|
| 3 |
+
B cell|Memory B cell B cell 15355
|
| 4 |
+
B cell|Naive B cell B cell 27393
|
| 5 |
+
B cell|Plasma cell B cell 7466
|
| 6 |
+
B cell|Transitional B cell B cell 21394
|
| 7 |
+
DC|ASDC DC 80
|
| 8 |
+
DC|cDC1 DC 159
|
| 9 |
+
DC|cDC2 DC 2154
|
| 10 |
+
DC|pDC DC 623
|
| 11 |
+
Monocyte|CD14 monocyte Monocyte 69332
|
| 12 |
+
Monocyte|CD16 monocyte Monocyte 14466
|
| 13 |
+
Monocyte|Intermediate monocyte Monocyte 7935
|
| 14 |
+
NK cell|CD56bright NK cell NK cell 3281
|
| 15 |
+
NK cell|CD56dim NK cell NK cell 29686
|
| 16 |
+
NK cell|Proliferating NK cell NK cell 7078
|
| 17 |
+
Other|Erythrocyte Other 8632
|
| 18 |
+
Other|ILC Other 1741
|
| 19 |
+
Other|Platelet Other 10527
|
| 20 |
+
Other|Progenitor cell Other 573
|
| 21 |
+
T cell|CD8aa T cell 14355
|
| 22 |
+
T cell|DN T cell T cell 9144
|
| 23 |
+
T cell|MAIT T cell 6017
|
| 24 |
+
T cell|Memory CD4 T cell T cell 60840
|
| 25 |
+
T cell|Memory CD8 T cell T cell 43275
|
| 26 |
+
T cell|Naive CD4 T cell T cell 43821
|
| 27 |
+
T cell|Naive CD8 T cell T cell 28373
|
| 28 |
+
T cell|Proliferating T cell T cell 4196
|
| 29 |
+
T cell|Treg T cell 11225
|
| 30 |
+
T cell|gdT T cell 28125
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/cv3_full/SPLIT.json
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset": "ye2026_sepsis",
|
| 3 |
+
"kind": "cv",
|
| 4 |
+
"idx": 3,
|
| 5 |
+
"reference": [
|
| 6 |
+
"Abd-PS04",
|
| 7 |
+
"Abd-PS05",
|
| 8 |
+
"Abd-PS07",
|
| 9 |
+
"Abd-PS19",
|
| 10 |
+
"Abd-PS23",
|
| 11 |
+
"Abd-PS27",
|
| 12 |
+
"Abd-S120",
|
| 13 |
+
"Abd-S123",
|
| 14 |
+
"Abd-S156",
|
| 15 |
+
"Abd-S39",
|
| 16 |
+
"Abd-S42",
|
| 17 |
+
"Abd-S47",
|
| 18 |
+
"Abd-S54",
|
| 19 |
+
"Abd-S57",
|
| 20 |
+
"Abd-S66",
|
| 21 |
+
"Abd-S79",
|
| 22 |
+
"Abd-S98",
|
| 23 |
+
"HC05",
|
| 24 |
+
"HC07",
|
| 25 |
+
"HC09",
|
| 26 |
+
"HC13",
|
| 27 |
+
"HC16",
|
| 28 |
+
"IC10",
|
| 29 |
+
"IC15",
|
| 30 |
+
"IC16",
|
| 31 |
+
"IC19",
|
| 32 |
+
"PHC02",
|
| 33 |
+
"PHC03",
|
| 34 |
+
"PHC05",
|
| 35 |
+
"PIC02",
|
| 36 |
+
"PIC04",
|
| 37 |
+
"PIC05",
|
| 38 |
+
"Res-PS03",
|
| 39 |
+
"Res-PS12",
|
| 40 |
+
"Res-PS22",
|
| 41 |
+
"Res-PS25",
|
| 42 |
+
"Res-PS26",
|
| 43 |
+
"Res-S10",
|
| 44 |
+
"Res-S139",
|
| 45 |
+
"Res-S146",
|
| 46 |
+
"Res-S164",
|
| 47 |
+
"Res-S166",
|
| 48 |
+
"Res-S174",
|
| 49 |
+
"Res-S177",
|
| 50 |
+
"Res-S184",
|
| 51 |
+
"Res-S19",
|
| 52 |
+
"Res-S26",
|
| 53 |
+
"Res-S77",
|
| 54 |
+
"Res-S87",
|
| 55 |
+
"Skin-S140",
|
| 56 |
+
"Skin-S142",
|
| 57 |
+
"Skin-S152",
|
| 58 |
+
"Skin-S43",
|
| 59 |
+
"Skin-S46",
|
| 60 |
+
"Skin-S74",
|
| 61 |
+
"Uri-S147",
|
| 62 |
+
"Uri-S157",
|
| 63 |
+
"Uri-S93",
|
| 64 |
+
"Abd-PS20",
|
| 65 |
+
"HC01",
|
| 66 |
+
"IC23",
|
| 67 |
+
"PHC01",
|
| 68 |
+
"Res-S127",
|
| 69 |
+
"Res-S150",
|
| 70 |
+
"Res-S40",
|
| 71 |
+
"Skin-S52"
|
| 72 |
+
],
|
| 73 |
+
"mixture": [
|
| 74 |
+
"Abd-S102",
|
| 75 |
+
"Abd-S103",
|
| 76 |
+
"Abd-S51",
|
| 77 |
+
"Abd-S83",
|
| 78 |
+
"HC12",
|
| 79 |
+
"IC22",
|
| 80 |
+
"PIC01",
|
| 81 |
+
"Res-PS02",
|
| 82 |
+
"Res-PS16",
|
| 83 |
+
"Res-PS21",
|
| 84 |
+
"Res-S125",
|
| 85 |
+
"Res-S136",
|
| 86 |
+
"Res-S149",
|
| 87 |
+
"Skin-S38",
|
| 88 |
+
"Uri-S134",
|
| 89 |
+
"Uri-S20"
|
| 90 |
+
],
|
| 91 |
+
"run_json_check": true,
|
| 92 |
+
"n_train_rows": 58,
|
| 93 |
+
"n_inner_val_rows": 8,
|
| 94 |
+
"n_reference_samples": 66,
|
| 95 |
+
"n_mixture_samples": 16,
|
| 96 |
+
"reference_cells": 485283,
|
| 97 |
+
"states": 29,
|
| 98 |
+
"states_merged_minor": 0,
|
| 99 |
+
"types": [
|
| 100 |
+
"B cell",
|
| 101 |
+
"DC",
|
| 102 |
+
"Monocyte",
|
| 103 |
+
"NK cell",
|
| 104 |
+
"Other",
|
| 105 |
+
"T cell"
|
| 106 |
+
],
|
| 107 |
+
"missing_types": [],
|
| 108 |
+
"bp_axis_genes": 18787,
|
| 109 |
+
"genes_kept": 17370,
|
| 110 |
+
"genes_dropped_not_bulk_valid": 0,
|
| 111 |
+
"genes_dropped_zero_reference": 1417,
|
| 112 |
+
"gene_mode": "full",
|
| 113 |
+
"aggregates_sha256": "1c866cbb8990359c870f46804e55cbae4a38cb82b5e0bf5f47bd9a552ada966a",
|
| 114 |
+
"files": {
|
| 115 |
+
"reference.tsv.gz": "c2fcbd5fe669d100078d198d06a0b099cb11763b66373c3ed3060cd3cb1f1e18",
|
| 116 |
+
"state_types.tsv": "650bad37dd3daac4bc0ef95973789c46c54d07fd1a101c07e874646446b33d5f",
|
| 117 |
+
"mixture.tsv.gz": "a558b35fb46a077b5555cfb7eee069a0143b6a51080b85a361da745b4ee36635"
|
| 118 |
+
},
|
| 119 |
+
"tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
|
| 120 |
+
"common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
|
| 121 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/cv3_full/state_types.tsv
ADDED
|
@@ -0,0 +1,30 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
state type n_cells
|
| 2 |
+
B cell|Effector B cell B cell 8037
|
| 3 |
+
B cell|Memory B cell B cell 15355
|
| 4 |
+
B cell|Naive B cell B cell 27393
|
| 5 |
+
B cell|Plasma cell B cell 7466
|
| 6 |
+
B cell|Transitional B cell B cell 21394
|
| 7 |
+
DC|ASDC DC 80
|
| 8 |
+
DC|cDC1 DC 159
|
| 9 |
+
DC|cDC2 DC 2154
|
| 10 |
+
DC|pDC DC 623
|
| 11 |
+
Monocyte|CD14 monocyte Monocyte 69332
|
| 12 |
+
Monocyte|CD16 monocyte Monocyte 14466
|
| 13 |
+
Monocyte|Intermediate monocyte Monocyte 7935
|
| 14 |
+
NK cell|CD56bright NK cell NK cell 3281
|
| 15 |
+
NK cell|CD56dim NK cell NK cell 29686
|
| 16 |
+
NK cell|Proliferating NK cell NK cell 7078
|
| 17 |
+
Other|Erythrocyte Other 8632
|
| 18 |
+
Other|ILC Other 1741
|
| 19 |
+
Other|Platelet Other 10527
|
| 20 |
+
Other|Progenitor cell Other 573
|
| 21 |
+
T cell|CD8aa T cell 14355
|
| 22 |
+
T cell|DN T cell T cell 9144
|
| 23 |
+
T cell|MAIT T cell 6017
|
| 24 |
+
T cell|Memory CD4 T cell T cell 60840
|
| 25 |
+
T cell|Memory CD8 T cell T cell 43275
|
| 26 |
+
T cell|Naive CD4 T cell T cell 43821
|
| 27 |
+
T cell|Naive CD8 T cell T cell 28373
|
| 28 |
+
T cell|Proliferating T cell T cell 4196
|
| 29 |
+
T cell|Treg T cell 11225
|
| 30 |
+
T cell|gdT T cell 28125
|