Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261013T223459Z-f01-two-host-dispatch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/REMOTE_CODE_VERIFIED.json

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paper-releases/pbisc-diffusion/updates/20261013T223459Z-f01-two-host-dispatch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/REMOTE_INPUTS_VERIFIED.json

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+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ji2025_chili/disease/draw4/support.json": "0b2a8a6ec8791feece6f444218afd8c1aeb9346e50d7d55ba1c07ec0b2234f17",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw0/support.json": "06dd3dede455dd0c86f2fa337830d03d7bb9e60c33475805818a85f9217c13fc",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw1/support.json": "48e6709c9f80a872fc050c4a8ac855cec56de1201995cee86739847fb750fe50",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw2/support.json": "9dace6bca29e7c153938d33750e2cb1b22e4a94c4f6657ab4bc37ca45e813023",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw3/support.json": "4f329b51b107925621b89dfc62b41f65baebefd6bc7625b10c3848194121296b",
+    "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/ye2026_sepsis/disease/draw4/support.json": "7643e9a575e9008302b152d6413ed1dc79a41efad9731958a54c20ca4603bff7"
+  },
+  "host": "server_2",
+  "mismatches": []
+}

paper-releases/pbisc-diffusion/updates/20261013T223459Z-f01-two-host-dispatch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/TWO_HOST_UPDATE.md

@@ -0,0 +1,16 @@
+# Two-host downstream execution — 2026-10-14
+
+User authorized server_2 use when idle, no duplicate experiments, and Hugging Face preservation.
+
+- Pretraining continues untouched on server_1; same checkpoint, input stream, seed and 6k gene order.
+- Existing controller loads the updated downstream entrypoint only after PRETRAIN_VERIFIED.json. No controller restart.
+- Fixed owner manifest assigns 50 unique adaptation runs to each host. Five aliases inherit their source owner and are reused after the source completes.
+- SLE, global raw/refcal and bulk-only sampling also use two GPU lanes. GPU work on each host uses its own ml-run/shared exclusive lock, no preemption.
+- CPU benchmark scoring stays serialized on server_1 to avoid memory contention. The full pooled CV analysis waits for both lanes.
+- A server_1 singleton lock prevents concurrent downstream controllers. A failed operation retains its receipt and is never reassigned or automatically retried; a busy GPU queues on its designated host.
+- Both workers write distinct outputs to the same NAS payload; all execution receipts are coordinated on server_1.
+- 18 code files and 199 immutable input files were verified equal on server_2. No existing differing replica was overwritten. Both GPUs use torch 2.14.0+cu130; host changes are recorded, not claimed bitwise identical.
+- CPU-only end-to-end remote launch proof passed inside remote ml.slice and wrote back through shared NAS. No scientific training or sampling was repeated for this proof.
+- E16 checkpoint and provenance are uploaded immediately after pretrain verification to gated junidude14/PBISC and private junidude14/PBISC-data under campaigns/f01-6k-trunk4x-20261013. All unique adaptation checkpoints and core result tables follow at data completion. Verify pinned revision + SHA256 before recording HF success.
+- This explicit HF backup precedes the separate independent archive capacity check. An insufficient independent archive remains pending, preserves NAS originals, and never falsely advances paper LATEST.
+- Source/controller/model configs are unchanged. Previous downstream script and workflow seal are preserved in revisions/20261014_before_two_host. The replacement seal records this authorized execution-only change.

paper-releases/pbisc-diffusion/updates/20261013T223459Z-f01-two-host-dispatch/diffusion/dataset/server_1/model8/plans/f01_trunk4x_complete_20261013/TWO_HOST_VERIFIED.json

@@ -0,0 +1,51 @@
+{
+  "at": "2026-10-13T22:34:59.676532+00:00",
+  "pretraining_snapshot": {
+    "device": "cuda",
+    "epoch": 4,
+    "epochs": 16,
+    "estimated_seconds_remaining_in_epoch": 56.736923888151054,
+    "estimated_steps_in_epoch": 47762,
+    "global_step": 190693,
+    "last_checkpoint": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/f01_trunk4x_complete_20261013/payload/pretrain/f01_6k_trunk4x_seed20260627/checkpoint_epoch_003.pt",
+    "latest_grad_norm": 0.010657754726707935,
+    "latest_loss": 0.14190277457237244,
+    "memory": {
+      "cuda_allocated_gib": 3.7039260864257812,
+      "cuda_free_gib": 0.93121337890625,
+      "cuda_peak_allocated_gib": 5.497453689575195,
+      "cuda_reserved_gib": 5.822265625,
+      "cuda_total_gib": 121.68767166137695,
+      "system_available_gib": 91.55462646484375
+    },
+    "schema_version": "pbisc_sdd.status.v1",
+    "started_at": "2026-10-13T13:53:14.596818+00:00",
+    "status": "RUNNING",
+    "step_in_epoch": 47400,
+    "steps_per_second": 6.380324754892116,
+    "training_contract": "pbisc_sdd.ladder_training.v1",
+    "updated_at": "2026-10-13T22:34:34.512668+00:00"
+  },
+  "controller": "ActiveState=active\nSubState=running\n",
+  "tests": {
+    "scheduler_unique_105_routes": true,
+    "unique_adaptations_per_host": [
+      50,
+      50
+    ],
+    "alias_dependencies": true,
+    "failure_no_retry": true,
+    "parallel_lanes": true,
+    "remote_cpu_probe_inside_ml_slice": {
+      "host": "spark-0110.local",
+      "inside_ml_slice": true,
+      "cuda_initialized": false
+    },
+    "remote_cli_imports": true
+  },
+  "hf_visibility": {
+    "junidude14/PBISC": "public gated auto",
+    "junidude14/PBISC-data": "private"
+  },
+  "not_yet_executed": "New E16 downstream scientific operations await pretraining; only dispatch probe executed."
+}