Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/cv_pooled_cibersortx/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,3258,-0.06702480269870736,0.2548893770824626,-0.16386875515926083,0.32496898186121953
+zero_filled,T cell,pseudobulk_log1p_cpm,3258,-0.06562248212010972,0.2164745523777111,-0.12263468234131543,0.234510549108628
+zero_filled,B cell,mean_cp10k,3310,-0.09694282124680663,0.27458639801653467,-0.10821006006745448,0.02576011914814949
+zero_filled,B cell,pseudobulk_log1p_cpm,3310,0.020223858617399816,0.2711145517540278,0.0013454637137675072,0.06983006892124761
+zero_filled,Monocyte,mean_cp10k,3289,0.03278031388569599,0.5481103923782986,-0.028189037067436033,0.1025949900837766
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3289,0.10139157553664532,0.6203629305570988,0.025705561662150586,0.13122101359196064
+zero_filled,NK cell,mean_cp10k,3240,-0.012144328666813985,0.1861970975708186,0.004540908194832469,-0.08908885912675901
+zero_filled,NK cell,pseudobulk_log1p_cpm,3240,0.001986632639808793,0.05592238177293225,0.010256884227687224,-0.1456482496832203
+covered,T cell,mean_cp10k,1837,0.2290929521811986,0.28770023639135767,0.02798753608666043,0.7329059930305484
+covered,T cell,pseudobulk_log1p_cpm,1837,0.22029072127363813,0.31125467235236826,-0.023001362029669348,0.7538905515042567
+covered,B cell,mean_cp10k,0,,,,
+covered,B cell,pseudobulk_log1p_cpm,0,,,,
+covered,Monocyte,mean_cp10k,23,-0.4843751620042854,0.6475947497575993,-0.4848336159599504,-0.18761667583141753
+covered,Monocyte,pseudobulk_log1p_cpm,23,-0.6376032982586828,0.43030443211727715,-0.5607182963720342,-0.4076673476002944
+covered,NK cell,mean_cp10k,7,-0.120402202512472,0.8691761173460799,0.18248553937510723,-0.2393292698432707
+covered,NK cell,pseudobulk_log1p_cpm,7,0.5445638357409318,0.756004989133863,0.2357662082693812,0.5498085515498052

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/cv_pooled_cibersortx/per_donor.csv

@@ -0,0 +1,83 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
+Abd-PS04,ped_sepsis,0.6015413526833824,0.6015413526833824,0.5144486644248925,0.5144486644248925,0.3770081360494281,0.06332263241559793,0.06332263241559793,0.14094329234721967,0.08803041500108648,0.08803041500108648,0.17030647825289044,0.4199628976400461,0.4199628976400461,0.5608368507983116,0.025410928454195084,0.025410928454195084,0.02147182969352175,0.13256448675081903,0.13256448675081903,0.003853918150119288,0.27070863973825543,0.27070863973825543,0.10258763075793724
+Abd-PS05,ped_sepsis,0.828961049569924,0.828961049569924,0.6567535671033276,0.6567535671033276,0.2455944540727902,0.1549731374608526,0.1549731374608526,0.30387059503177355,0.2928589772421198,0.2928589772421198,0.5060658578856152,0.08402593004849034,0.08402593004849034,0.07019064124783363,0.03673415427289748,0.03673415427289748,0.0891103408434431,0.013552725988317563,0.013552725988317563,0.008954361640670132,0.4178550749873223,0.4178550749873223,0.021808203350664357
+Abd-PS07,ped_sepsis,0.5094310732222059,0.5094310732222059,0.5648442210426228,0.5648442210426228,0.2294900153609831,0.6078996707621689,0.6078996707621689,0.8626152073732719,0.023462005889534305,0.023462005889534305,0.023329493087557603,0.011627497462027089,0.011627497462027089,0.002304147465437788,0.3023702080637778,0.3023702080637778,0.09331797235023041,0.034390733844987316,0.034390733844987316,0.0002880184331797235,0.02024988397750459,0.02024988397750459,0.018145161290322582
+Abd-PS19,ped_sepsis,0.5076716673173196,0.5076716673173196,0.5395395617041848,0.5395395617041848,0.3432024048096192,0.4918728075200995,0.4918728075200995,0.4622995991983968,0.07399523472456297,0.07399523472456297,0.11209919839679358,0.07798055486327016,0.07798055486327016,0.2937124248496994,0.08630626585704222,0.08630626585704222,0.05586172344689379,0.11536576725899184,0.11536576725899184,0.0156563126252505,0.1544793697760332,0.1544793697760332,0.06037074148296593
+Abd-PS20,ped_sepsis,0.23237698513253502,0.23237698513253502,0.2317176956096886,0.2317176956096886,0.3857322719370483,0.39400380646586575,0.39400380646586575,0.30496843261048584,0.6052480953784692,0.6052480953784692,0.5780949766675817,0.0007480981556649197,0.0007480981556649197,0.08770244304144935,0.0,0.0,0.007823222618720834,0.0,0.0,0.0005489980785067252,0.0,0.0,0.02086192698325556
+Abd-PS23,ped_sepsis,0.8121140110340503,0.8121140110340503,0.5644584928997279,0.5644584928997279,0.608717567881179,0.2770060280216038,0.2770060280216038,0.2529589231840334,0.194135408101601,0.194135408101601,0.3272220932931075,0.06399881404440476,0.06399881404440476,0.32142028312833604,0.0,0.0,0.013460199582269667,0.0,0.0,0.002088651659317707,0.4648597498323905,0.4648597498323905,0.08284984915293572
+Abd-PS27,ped_sepsis,0.3519045715245931,0.3519045715245931,0.4548728378055049,0.4548728378055049,0.6182166118595522,0.7575515213879217,0.7575515213879217,0.6126021003500584,0.016645280066725936,0.016645280066725936,0.06078285774901877,0.044836230750303845,0.044836230750303845,0.13196138750397793,0.0,0.0,0.010289593720165482,0.033973056726130456,0.033973056726130456,0.0029701920016972526,0.14699391106891802,0.14699391106891802,0.1813938686750822
+Abd-S102,adult_sepsis,1.2912289731922635,1.2912289731922635,1.342606326943688,1.342606326943688,0.3606717129240259,0.22003898336114422,0.22003898336114422,0.47981497056349875,0.08359558752938584,0.08359558752938584,0.39318755256518084,0.3136863481256531,0.3136863481256531,0.0053616484440706475,0.019632355465398797,0.019632355465398797,0.095878889823381,0.08736192887727509,0.08736192887727509,0.0007359125315391085,0.27568479664114287,0.27568479664114287,0.02502102607232969
+Abd-S103,adult_sepsis,0.43354526233092083,0.43354526233092083,0.2664542205475038,0.2664542205475038,0.5684134564363792,0.37677759672925726,0.37677759672925726,0.4813753581661891,0.06141885022726367,0.06141885022726367,0.14782977820227103,0.06636673524667273,0.06636673524667273,0.0024408362517245037,0.018171110777519844,0.018171110777519844,0.04393505253104107,0.009898826181956848,0.009898826181956848,0.00021224663058473945,0.46736688083732963,0.46736688083732963,0.3242067282181895
+Abd-S120,adult_sepsis,0.4461011496288649,0.4461011496288649,0.41993385023633933,0.41993385023633933,0.1132934463081446,0.34845256077004644,0.34845256077004644,0.3140238630468615,0.09634137943369848,0.09634137943369848,0.11049628220646723,0.2555691386102471,0.2555691386102471,0.46446481065191075,0.10411200642960577,0.10411200642960577,0.07297250561992046,0.0961663699912151,0.0961663699912151,0.0008646031471554556,0.09935854476518712,0.09935854476518712,0.03717793532768459
+Abd-S123,adult_sepsis,0.931350751920348,0.931350751920348,0.8692325930284164,0.8692325930284164,0.40709255437371,0.15503264447668388,0.15503264447668388,0.16986823305286552,0.0,0.0,0.08779171297031275,0.13973014435120373,0.13973014435120373,0.5027782187648833,0.11561438756968853,0.11561438756968853,0.10938244165740593,0.13534796756726655,0.13534796756726655,0.0007937767899666614,0.4542748560351573,0.4542748560351573,0.1293856167645658
+Abd-S156,adult_sepsis,0.6593126203467689,0.6593126203467689,0.6568723439818109,0.6568723439818109,0.5273359984770607,0.23895319395555958,0.23895319395555958,0.3343803540833809,0.013493373182234427,0.013493373182234427,0.08209594517418618,0.2502923491584447,0.2502923491584447,0.39406053683609366,0.06923241487817802,0.06923241487817802,0.0910908052541405,0.13935924227592264,0.13935924227592264,0.0012849800114220445,0.2886694265496605,0.2886694265496605,0.0970873786407767
+Abd-S39,adult_sepsis,1.0172283221304141,1.0172283221304141,0.782207200426567,0.782207200426567,0.8112340557756543,0.13578392079520102,0.13578392079520102,0.13819622465625728,0.021492516818932095,0.021492516818932095,0.06152412025168958,0.22714132861033584,0.22714132861033584,0.6933115823817292,0.09571641776430996,0.09571641776430996,0.049638778839431366,0.056740748108383005,0.056740748108383005,0.0013982754602656724,0.46312506790283803,0.46312506790283803,0.05593101841062689
+Abd-S42,adult_sepsis,0.487218412856395,0.487218412856395,0.600709295385238,0.600709295385238,0.1889142683112532,0.48687682040443386,0.48687682040443386,0.5748439165524593,0.004383248898461349,0.004383248898461349,0.09760925841327851,0.10798134098887069,0.10798134098887069,0.17039744175422566,0.21720925581091932,0.21720925581091932,0.05862646566164154,0.08195295070910849,0.08195295070910849,0.0016750418760469012,0.10159638318820621,0.10159638318820621,0.0968478757423481
+Abd-S47,adult_sepsis,0.20196039629949683,0.20196039629949683,0.14511392698995895,0.14511392698995895,0.1654567808305106,0.7926902660814916,0.7926902660814916,0.7027976414502571,0.17425177620723697,0.17425177620723697,0.20474219044034625,0.014683907759712057,0.014683907759712057,0.03224187680341237,0.0,0.0,0.019069125580228326,0.01171484738628464,0.01171484738628464,0.0006272738677706687,0.006659202565274735,0.006659202565274735,0.040521891857985194
+Abd-S51,adult_sepsis,0.5259975746491563,0.5259975746491563,0.7280158523345924,0.7280158523345924,0.3662083029861617,0.22983768044374497,0.22983768044374497,0.25273124544792425,0.28424916423995145,0.28424916423995145,0.269482884195193,0.14386698250447713,0.14386698250447713,0.3551347414420976,0.09360073497236275,0.09360073497236275,0.03670793882010197,0.19279637536645186,0.19279637536645186,0.0014566642388929353,0.055649062473011865,0.055649062473011865,0.08448652585579024
+Abd-S54,adult_sepsis,0.5954088664200995,0.5954088664200995,0.6541843358572024,0.6541843358572024,0.5083407521105142,0.21727013446992996,0.21727013446992996,0.4854182655410591,0.10692361599871053,0.10692361599871053,0.1364799181376311,0.10583576416427003,0.10583576416427003,0.012918905090816066,0.3825879945439369,0.3825879945439369,0.340752110514198,0.06882494547140705,0.06882494547140705,0.0011511895625479663,0.1185575453517457,0.1185575453517457,0.023279611153747763
+Abd-S57,adult_sepsis,0.8531214546227628,0.8531214546227628,1.002029082015999,1.002029082015999,0.7179777482331537,0.43590140220595286,0.43590140220595286,0.8422783570079071,0.0,0.0,0.009026660135749773,0.10945806438001034,0.10945806438001034,0.016164019312854244,0.0955534047349923,0.0955534047349923,0.10671051710866979,0.14451367392040218,0.14451367392040218,0.0012595339724302008,0.21457345475864223,0.21457345475864223,0.024560912462388916
+Abd-S66,adult_sepsis,0.9986174651621329,0.9986174651621329,1.0493040742970832,1.0493040742970832,0.2429119892608439,0.1682581136558929,0.1682581136558929,0.49295242889504154,0.0641220538385504,0.0641220538385504,0.23873647118046817,0.2905489504448,0.2905489504448,0.03788069468915178,0.24597317234553503,0.24597317234553503,0.18688648376541656,0.07585557146421881,0.07585557146421881,0.0003775484520513466,0.15524213825100294,0.15524213825100294,0.04316637301787063
+Abd-S79,adult_sepsis,0.7253889749826818,0.7253889749826818,0.8601616576328978,0.8601616576328978,0.6268529753025028,0.36942666006568275,0.36942666006568275,0.5500994530084535,0.1850164997724827,0.1850164997724827,0.30892590750870214,0.29895117216646183,0.29895117216646183,0.024365987071108902,0.03562217365507849,0.03562217365507849,0.09373446046742914,0.029087058293456678,0.029087058293456678,0.00012431626056688214,0.08189643604683755,0.08189643604683755,0.022749875683739432
+Abd-S83,adult_sepsis,1.6343834206108712,1.6343834206108712,1.6448310478011101,1.6448310478011101,0.5345560745154883,0.0,0.0,0.3924947656627476,0.0,0.0,0.16991464003865356,0.26348116787233067,0.26348116787233067,0.049927524561120956,0.046554464601956766,0.046554464601956766,0.3013367692059913,0.07088490003766489,0.07088490003766489,0.0009663391850539539,0.6190794674880477,0.6190794674880477,0.0853599613464326
+Abd-S98,adult_sepsis,1.3599273464139254,1.3599273464139254,1.4033079400549722,1.4033079400549722,0.3852375249500998,0.17436487788386645,0.17436487788386645,0.7477045908183633,0.002956878050887499,0.002956878050887499,0.10958083832335329,0.30972113165654647,0.30972113165654647,0.019560878243512974,0.2022716626312951,0.2022716626312951,0.11037924151696607,0.09331154217962476,0.09331154217962476,0.0015968063872255488,0.21737390759777966,0.21737390759777966,0.011177644710578843
+HC01,adult_HC,0.5452147542128336,0.5452147542128336,0.7914993373360385,0.7914993373360385,0.1363990956453357,0.6282671230892277,0.6282671230892277,0.5901897178806645,0.01760381859482874,0.01760381859482874,0.09938071365378945,0.0,0.0,0.1862774009633343,0.13276382572125162,0.13276382572125162,0.06772830040302762,0.19790297896928855,0.19790297896928855,0.028408532389658903,0.023462253625403412,0.023462253625403412,0.028015334709525212
+HC05,adult_HC,0.46755252220001,0.46755252220001,0.5711000527288826,0.5711000527288826,0.0757682468021068,0.5650809575796945,0.5650809575796945,0.6924604966139954,0.08493510637673396,0.08493510637673396,0.09498871331828443,0.0,0.0,0.08099322799097065,0.27963493601898554,0.27963493601898554,0.10455981941309254,0.07034900002458606,0.07034900002458606,0.01164785553047404,0.0,0.0,0.015349887133182845
+HC07,adult_HC,0.657060799506365,0.657060799506365,0.82181736755679,0.82181736755679,0.3424633781763825,0.3141624090211243,0.3141624090211243,0.3848348960456584,0.0,0.0,0.03770892784345699,0.0,0.0,0.21962902568283735,0.4625727878916263,0.4625727878916263,0.3080921320831635,0.19331187195124233,0.19331187195124233,0.019262128006522626,0.029952931136007117,0.029952931136007117,0.03047289033836119
+HC09,adult_HC,0.5666671044110526,0.5666671044110526,0.6783985490104548,0.6783985490104548,0.1646373217606943,0.5624323051059799,0.5624323051059799,0.6319487497416821,0.02817503956801432,0.02817503956801432,0.06013639181649101,0.0,0.0,0.1529241578838603,0.28726296549452374,0.28726296549452374,0.11365984707584212,0.122129689831482,0.122129689831482,0.012399256044637322,0.0,0.0,0.028931597437487085
+HC12,adult_HC,0.451971798628619,0.451971798628619,0.48748621534530545,0.48748621534530545,0.1597204301075269,0.45649585350436744,0.45649585350436744,0.5456989247311828,0.05941060785666527,0.05941060785666527,0.05725806451612903,0.03176555900928009,0.03176555900928009,0.14623655913978495,0.3668274218079008,0.3668274218079008,0.2196236559139785,0.08550055782178653,0.08550055782178653,0.008870967741935484,0.0,0.0,0.022311827956989248
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/cv_pooled_cibersortx/summary.json

@@ -0,0 +1,234 @@
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+  "cv2|DC": 1351,
+  "cv2|Other": 3,
+  "cv3|T cell": 3447,
+  "cv3|B cell": 86,
+  "cv3|Monocyte": 319,
+  "cv3|NK cell": 666,
+  "cv3|DC": 0,
+  "cv3|Other": 347,
+  "cv4|T cell": 3256,
+  "cv4|B cell": 2660,
+  "cv4|Monocyte": 1157,
+  "cv4|NK cell": 1832,
+  "cv4|DC": 569,
+  "cv4|Other": 665
+ },
+ "scsemi_cv": {
+  "pooled": {
+   "comp_l1": 0.5022299158951089,
+   "logfc_r_mean_cp10k": 0.43526410070392063,
+   "deg_top50_sum": 6
+  }
+ },
+ "tool_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
+ "score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
+ "seconds": 5.9
+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/cv_pooled_full/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,3258,0.12321798014618557,0.2548893770824626,-0.07276830480952697,0.6846340739999043
+zero_filled,T cell,pseudobulk_log1p_cpm,3258,0.1694202318273812,0.2164745523777111,-0.006556129054202617,0.800359946410307
+zero_filled,B cell,mean_cp10k,3310,0.18245307729244786,0.27458639801653467,0.05256385072430494,0.5056610087617734
+zero_filled,B cell,pseudobulk_log1p_cpm,3310,0.18776151377286632,0.2711145517540278,0.03546012934761868,0.5909978236531717
+zero_filled,Monocyte,mean_cp10k,3289,0.5804369224147756,0.5481103923782986,0.36788768737691946,0.6173309407280226
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3289,0.5819556644060953,0.6203629305570988,0.1950334186461418,0.7854877811803096
+zero_filled,NK cell,mean_cp10k,3240,0.13576034093508382,0.1861970975708186,0.031179248458875677,0.5971518813398687
+zero_filled,NK cell,pseudobulk_log1p_cpm,3240,0.01598816406951922,0.05592238177293225,-0.018842789423434893,0.563759942687768
+covered,T cell,mean_cp10k,3062,0.11313279840964188,0.18603800999270456,-0.03521269937544967,0.7343495001152145
+covered,T cell,pseudobulk_log1p_cpm,3062,0.1786603827758736,0.20102829340172665,0.019548039493756806,0.8365419719945847
+covered,B cell,mean_cp10k,3115,0.17757783392245124,0.20918308344431927,0.07729130060407809,0.5462685236952579
+covered,B cell,pseudobulk_log1p_cpm,3115,0.19326396504970095,0.27117526958398397,0.03178294266179462,0.6245886488652816
+covered,Monocyte,mean_cp10k,3098,0.6034930347236448,0.5082987501029343,0.4130227301963839,0.6641233119043294
+covered,Monocyte,pseudobulk_log1p_cpm,3098,0.5960763533812481,0.6342111183143434,0.17781519396631085,0.8139353316040103
+covered,NK cell,mean_cp10k,3044,0.11915101400876962,0.1091111864233934,0.0647805388261137,0.6371496172673086
+covered,NK cell,pseudobulk_log1p_cpm,3044,0.014750561115145716,0.03803386066018049,-0.00929145532978294,0.5856924872782383