Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw4_cibersortx/per_donor.csv +25 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw4_cibersortx/summary.json +157 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw4_full/contrast.csv +17 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw4_full/per_donor.csv +25 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw4_cibersortx/per_donor.csv
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| 1 |
+
donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
|
| 2 |
+
N032_AC,AC,0.4534644250056128,0.4534644250056128,0.5781406152088886,0.5781406152088886,0.3956190476190475,0.46533288236924086,0.46533288236924086,0.5891156462585034,0.19239154800951178,0.19239154800951178,0.10979591836734694,0.11657675802939599,0.11657675802939599,0.17551020408163265,0.0030588273706655313,0.0030588273706655313,0.04707482993197279,0.0831945617073438,0.0831945617073438,0.025714285714285714,0.13944542251384193,0.13944542251384193,0.0527891156462585
|
| 3 |
+
N038_BC,BC,0.6560094980131507,0.6560094980131507,0.7559061427755037,0.7559061427755037,0.4366545281447101,0.37249316681854727,0.37249316681854727,0.5608711174580507,0.08715079689594663,0.08715079689594663,0.0046411995715815784,0.15338830859892003,0.15338830859892003,0.16565512317029632,0.09564395626360023,0.09564395626360023,0.2170653338093538,0.02833486750942961,0.02833486750942961,0.034273473759371655,0.26298890391355617,0.26298890391355617,0.017493752231345947
|
| 4 |
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N038_AC,AC,0.859374485603895,0.859374485603895,0.958593388271038,0.958593388271038,0.199869885982562,0.27973084288479355,0.27973084288479355,0.6830985915492958,0.09884428577484974,0.09884428577484974,0.00829979879275654,0.20899355744853448,0.20899355744853448,0.1290241448692153,0.10703396530044737,0.10703396530044737,0.12072434607645875,0.01931253653796251,0.01931253653796251,0.03194164989939638,0.2860848120534124,0.2860848120534124,0.026911468812877263
|
| 5 |
+
N055_AC,AC,0.8136691472017668,0.8136691472017668,0.792269046542138,0.792269046542138,0.8540018570102137,0.08488171298537221,0.08488171298537221,0.340297121634169,0.19995343580138447,0.19995343580138447,0.07799442896935933,0.25606832995271833,0.25606832995271833,0.32474466109563604,0.12245679478878835,0.12245679478878835,0.2051996285979573,0.02160651047110256,0.02160651047110256,0.0060352831940575676,0.315033216000634,0.315033216000634,0.0457288765088208
|
| 6 |
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N136_TOL,TOL,0.6764241491534099,0.6764241491534099,0.7701474208294744,0.7701474208294744,0.819699604743083,0.1889884108519585,0.1889884108519585,0.48616600790513836,0.11355376680786383,0.11355376680786383,0.10013175230566534,0.3809058082161628,0.3809058082161628,0.19104084321475626,0.052509659498872735,0.052509659498872735,0.0922266139657444,0.0,0.0,0.0013175230566534915,0.2640423546251421,0.2640423546251421,0.12911725955204217
|
| 7 |
+
N136_FU1,FU1,0.5798647091307753,0.5798647091307753,0.7051685179989572,0.7051685179989572,0.8205498234825191,0.271184445613936,0.271184445613936,0.4246668944311582,0.17315143651488432,0.17315143651488432,0.14724974376494704,0.4574027151123414,0.4574027151123414,0.19337205329689103,0.006789224369026306,0.006789224369026306,0.09531943969935087,0.0,0.0,0.0023915271609156134,0.09147217838981198,0.09147217838981198,0.13700034164673727
|
| 8 |
+
N138_TOL,TOL,1.036131480151435,1.036131480151435,0.9739670371945944,0.9739670371945944,1.525104828751544,0.047038059896872354,0.047038059896872354,0.13803860401637746,0.15363987594378806,0.15363987594378806,0.02807564827451745,0.30729498515998865,0.30729498515998865,0.5878338857477091,0.03050626458471534,0.03050626458471534,0.17703255995320724,0.02828228323365896,0.02828228323365896,0.006044063170208618,0.4332385311809766,0.4332385311809766,0.06297523883798012
|
| 9 |
+
N138_FU1,FU1,0.9097738141498777,0.9097738141498777,0.9010241768900182,0.9010241768900182,0.8522721088435373,0.007720170737744699,0.007720170737744699,0.2728998576174656,0.12456244994482375,0.12456244994482375,0.04841006169909824,0.3618595952607222,0.3618595952607222,0.4831514000949217,0.04501600371824111,0.04501600371824111,0.1134314190792596,0.10104234417554081,0.10104234417554081,0.005220692928334125,0.35979943616292737,0.35979943616292737,0.07688656858092074
|
| 10 |
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N128_BC,BC,0.4472846100911242,0.4472846100911242,0.6103957966198779,0.6103957966198779,0.4963820263112934,0.3706683048980565,0.3706683048980565,0.5158892875448488,0.1452207297091874,0.1452207297091874,0.06817016914402871,0.3007851025050411,0.3007851025050411,0.29420809841107126,0.0,0.0,0.07842132239876987,0.07220247502339286,0.07220247502339286,0.03331624807790876,0.11112338786432209,0.11112338786432209,0.00999487442337263
|
| 11 |
+
N128_AC,AC,0.47927662889155587,0.47927662889155587,0.6560681266492318,0.6560681266492318,0.4450291190563952,0.3795293128961065,0.3795293128961065,0.5488389237007003,0.10987723364287105,0.10987723364287105,0.06524143015112421,0.2726018960090582,0.2726018960090582,0.2790269074824917,0.006866672741943506,0.006866672741943506,0.07077036490969407,0.11069119155879242,0.11069119155879242,0.029487652045705862,0.12043369315122839,0.12043369315122839,0.006634721710283818
|
| 12 |
+
N147_TOL,TOL,0.2889426336651708,0.2889426336651708,0.4357546255094898,0.4357546255094898,0.2993644859813084,0.3438475044912794,0.3438475044912794,0.44205607476635517,0.03260898439477503,0.03260898439477503,0.00809968847352025,0.4678111096835593,0.4678111096835593,0.4193146417445483,0.03130734690043431,0.03130734690043431,0.07102803738317758,0.0,0.0,0.0065420560747663555,0.124425054529952,0.124425054529952,0.0529595015576324
|
| 13 |
+
N150_BC,BC,0.7964447251898439,0.7964447251898439,0.8732599586015115,0.8732599586015115,0.1989609535552815,0.4292699839385313,0.4292699839385313,0.802301685162351,0.028079194249070946,0.028079194249070946,0.02301685162351007,0.11332146357752086,0.11332146357752086,0.1385121249486231,0.041132865597369124,0.041132865597369124,0.02178380600082203,0.047069561764344015,0.047069561764344015,0.005754212905877518,0.34112693087316376,0.34112693087316376,0.008631319358816275
|
| 14 |
+
N159_BC,BC,0.3584162049416853,0.3584162049416853,0.4524148251182648,0.4524148251182648,0.1656586398518126,0.718925252077082,0.718925252077082,0.6996559936491136,0.030557264258621455,0.030557264258621455,0.018523418893887273,0.1867857202157966,0.1867857202157966,0.08123842286319131,0.0,0.0,0.173590897062715,0.008407668897244085,0.008407668897244085,0.014024874305371792,0.055324094551255774,0.055324094551255774,0.01296639322572109
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| 15 |
+
N001_TOL,TOL,0.6020044564564232,0.6020044564564232,0.7799838312289789,0.7799838312289789,0.6438656769176387,0.5219750603352877,0.5219750603352877,0.51926475786497,0.025945223550145755,0.025945223550145755,0.03375751148815836,0.10861514773049825,0.10861514773049825,0.21067515022976316,0.025200921169829475,0.025200921169829475,0.2163308589607635,0.10670767292967256,0.10670767292967256,0.003711558854718982,0.21155597428456632,0.21155597428456632,0.016260162601626018
|
| 16 |
+
N001_FU1,FU1,0.622746055350986,0.622746055350986,0.5552807843219554,0.5552807843219554,0.8924287075727587,0.38532533706707167,0.38532533706707167,0.29601935341983726,0.07722172267475437,0.07722172267475437,0.06575764240158347,0.23747828788744704,0.23747828788744704,0.48823400043985044,0.07529647418854447,0.07529647418854447,0.13591378931163403,0.04482374839082814,0.04482374839082814,0.0010996261271167802,0.1798544297913544,0.1798544297913544,0.012975588299978007
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| 17 |
+
N012_TOL,TOL,0.40710923932438925,0.40710923932438925,0.39198391972538876,0.39198391972538876,0.841008992895116,0.3274936082257585,0.3274936082257585,0.34759278581010583,0.12842415925979614,0.12842415925979614,0.07884930690117753,0.31635642784550233,0.31635642784550233,0.4672827545088687,0.05317665295636419,0.05317665295636419,0.08570576837084513,0.006762510077164748,0.006762510077164748,0.0005962140408406618,0.1677866416354141,0.1677866416354141,0.01997317036816217
|
| 18 |
+
N012_FU1,FU1,0.5129528412435768,0.5129528412435768,0.6067706128467424,0.6067706128467424,0.734175631342031,0.1671751265739877,0.1671751265739877,0.35889219501029984,0.24176548034964787,0.24176548034964787,0.19249256122682537,0.39952483120275445,0.39952483120275445,0.3126573586633097,0.04373229350003534,0.04373229350003534,0.10849164568551156,0.027674212530203465,0.027674212530203465,0.000686655985351339,0.12012805584337118,0.12012805584337118,0.02677958342870222
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| 19 |
+
N018_BC,BC,0.8081418673961476,0.8081418673961476,0.7900263822356552,0.7900263822356552,0.8344958949096881,0.4494259351363221,0.4494259351363221,0.32939244663382594,0.14612181744597855,0.14612181744597855,0.042692939244663386,0.1119510172300105,0.1119510172300105,0.2889983579638752,0.03832944480262176,0.03832944480262176,0.2653530377668309,0.11145255654392645,0.11145255654392645,0.05812807881773399,0.14271922884114055,0.14271922884114055,0.015435139573070607
|
| 20 |
+
N018_AC,AC,0.5187716158544528,0.5187716158544528,0.6666978514653027,0.6666978514653027,0.4732575757575756,0.5159103279474072,0.5159103279474072,0.5900568181818182,0.08637704130833193,0.08637704130833193,0.03664772727272727,0.08200142669710939,0.08200142669710939,0.16164772727272728,0.04355471015552972,0.04355471015552972,0.14914772727272727,0.07907081434186784,0.07907081434186784,0.04261363636363636,0.1930856795497538,0.1930856795497538,0.019886363636363636
|
| 21 |
+
N022_TOL,TOL,0.8761336043451265,0.8761336043451265,1.0135668005389005,1.0135668005389005,0.7231498219665843,0.3685872999129838,0.3685872999129838,0.4864420706655711,0.04040233633256216,0.04040233633256216,0.03697617091207888,0.2761051120875418,0.2761051120875418,0.045740892906053134,0.09802954622998296,0.09802954622998296,0.4182415776499589,0.0,0.0,0.0,0.2168757054369293,0.2168757054369293,0.01259928786633799
|
| 22 |
+
N022_FU1,FU1,0.3648866838759401,0.3648866838759401,0.3555725646920031,0.3555725646920031,0.7131173365814049,0.5300604130742327,0.5300604130742327,0.48477466504263095,0.017967260202775972,0.017967260202775972,0.048721071863580996,0.11093081755331852,0.11093081755331852,0.20259845716605765,0.19332768302619527,0.19332768302619527,0.25334957369062117,0.02833220397215421,0.02833220397215421,0.0,0.1193816221713233,0.1193816221713233,0.010556232237109216
|
| 23 |
+
N035_TOL,TOL,0.7400828226407945,0.7400828226407945,0.786396123987384,0.786396123987384,0.8439599499374218,0.24834773984771558,0.24834773984771558,0.2853566958698373,0.07927084042170773,0.07927084042170773,0.016896120150187734,0.19461554266723502,0.19461554266723502,0.31101376720901125,0.12379130115839437,0.12379130115839437,0.3404255319148936,0.03825401498470043,0.03825401498470043,0.01376720901126408,0.315720560920247,0.315720560920247,0.03254067584480601
|
| 24 |
+
N043_TOL,TOL,0.9083755510066562,0.9083755510066562,1.057102773040322,1.057102773040322,0.8875306975249114,0.2611033076792885,0.2611033076792885,0.3548698167791707,0.12229849501906494,0.12229849501906494,0.05737704918032787,0.1661126952807855,0.1661126952807855,0.04580520732883317,0.12077449058787519,0.12077449058787519,0.4811957569913211,0.06389454652662198,0.06389454652662198,0.0028929604628736743,0.2658164649063639,0.2658164649063639,0.05785920925747348
|
| 25 |
+
N043_FU1,FU1,0.4545592630843396,0.4545592630843396,0.3429254555730019,0.3429254555730019,1.114739210551838,0.2071926521215851,0.2071926521215851,0.1638056444573756,0.09161841506572721,0.09161841506572721,0.06779167878964212,0.3896437800850297,0.3896437800850297,0.5728833284841431,0.10841845628085986,0.10841845628085986,0.14896712249054408,0.0,0.0,0.0034914169333721268,0.20312669644679807,0.20312669644679807,0.043060808844922895
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw4_cibersortx/summary.json
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset": "ji2025_chili",
|
| 3 |
+
"comparison": "fewshot",
|
| 4 |
+
"draw": 4,
|
| 5 |
+
"gene_mode": "cibersortx",
|
| 6 |
+
"stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ji2025_chili/fewshot_n5/draw4",
|
| 7 |
+
"lora_arm": "lora5",
|
| 8 |
+
"n_donors": 24,
|
| 9 |
+
"contrast": true,
|
| 10 |
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"genes_scoring": 5752,
|
| 11 |
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"genes_covered_by_Z_all_donors": 2334,
|
| 12 |
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"bayesprism": {
|
| 13 |
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"comp_l1": 0.6321183546570056,
|
| 14 |
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"comp_l1_by_variant": {
|
| 15 |
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"final_cells": 0.6321183546570056,
|
| 16 |
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"first_cells": 0.6321183546570056,
|
| 17 |
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"final_mrna": 0.7003923657443595,
|
| 18 |
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"first_mrna": 0.7003923657443595
|
| 19 |
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},
|
| 20 |
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"mean_fraction": {
|
| 21 |
+
"final_cells": {
|
| 22 |
+
"T cell": 0.3309,
|
| 23 |
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"B cell": 0.1061,
|
| 24 |
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"Monocyte": 0.249,
|
| 25 |
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"NK cell": 0.0611,
|
| 26 |
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"DC": 0.0428,
|
| 27 |
+
"Other": 0.21
|
| 28 |
+
},
|
| 29 |
+
"first_cells": {
|
| 30 |
+
"T cell": 0.3309,
|
| 31 |
+
"B cell": 0.1061,
|
| 32 |
+
"Monocyte": 0.249,
|
| 33 |
+
"NK cell": 0.0611,
|
| 34 |
+
"DC": 0.0428,
|
| 35 |
+
"Other": 0.21
|
| 36 |
+
},
|
| 37 |
+
"final_mrna": {
|
| 38 |
+
"T cell": 0.2757,
|
| 39 |
+
"B cell": 0.0962,
|
| 40 |
+
"Monocyte": 0.2967,
|
| 41 |
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"NK cell": 0.0483,
|
| 42 |
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"DC": 0.0863,
|
| 43 |
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"Other": 0.1968
|
| 44 |
+
},
|
| 45 |
+
"first_mrna": {
|
| 46 |
+
"T cell": 0.2757,
|
| 47 |
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"B cell": 0.0962,
|
| 48 |
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"Monocyte": 0.2967,
|
| 49 |
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"NK cell": 0.0483,
|
| 50 |
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"DC": 0.0863,
|
| 51 |
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"Other": 0.1968
|
| 52 |
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}
|
| 53 |
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},
|
| 54 |
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"logfc_r_mean_cp10k": 0.19026614523647764,
|
| 55 |
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"partial_r_mean_cp10k": 0.06763998315091661,
|
| 56 |
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"logfc_r_mean_cp10k_covered_genes": 0.33307327503858014,
|
| 57 |
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"deg_top50_sum": 0,
|
| 58 |
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"deg_top50_sum_covered_genes": 0,
|
| 59 |
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"per_type_logfc_r": {
|
| 60 |
+
"T cell": 0.119,
|
| 61 |
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"B cell": NaN,
|
| 62 |
+
"Monocyte": 0.2616,
|
| 63 |
+
"NK cell": NaN
|
| 64 |
+
}
|
| 65 |
+
},
|
| 66 |
+
"observed_mean_fraction": {
|
| 67 |
+
"T cell": 0.4467,
|
| 68 |
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"B cell": 0.0577,
|
| 69 |
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"Monocyte": 0.2738,
|
| 70 |
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"NK cell": 0.1703,
|
| 71 |
+
"DC": 0.0137,
|
| 72 |
+
"Other": 0.0378
|
| 73 |
+
},
|
| 74 |
+
"lora": {
|
| 75 |
+
"comp_l1": 0.6754540168870949,
|
| 76 |
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"coverage": 0.6936111111111111,
|
| 77 |
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"logfc_r_mean_cp10k": 0.2725492074488929,
|
| 78 |
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"deg_top50_sum": 0,
|
| 79 |
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"partial_r_mean_cp10k": 0.2467295164617603
|
| 80 |
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},
|
| 81 |
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"broadcast": {
|
| 82 |
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"logfc_r_mean_cp10k": 0.2254541110690231,
|
| 83 |
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"logfc_r_mean_cp10k_covered_genes": 0.372206471228401,
|
| 84 |
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"deg_top50_sum": 0
|
| 85 |
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},
|
| 86 |
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"other_arms": {
|
| 87 |
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"zs_raw": {
|
| 88 |
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"comp_l1": 0.7317503238566069,
|
| 89 |
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|
| 90 |
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|
| 91 |
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},
|
| 92 |
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"zs_pseudo": {
|
| 93 |
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"comp_l1": 0.19051591849007043,
|
| 94 |
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"logfc_r_mean_cp10k": 0.21609467450510275,
|
| 95 |
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"deg_top50_sum": 4
|
| 96 |
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},
|
| 97 |
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"zs_cal": {
|
| 98 |
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"comp_l1": 0.5272117580098429,
|
| 99 |
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|
| 100 |
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"deg_top50_sum": 0
|
| 101 |
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}
|
| 102 |
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},
|
| 103 |
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"gates": {
|
| 104 |
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"observed_composition_equal": true,
|
| 105 |
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"broadcast_r_equal": true,
|
| 106 |
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"broadcast_deg_equal": true
|
| 107 |
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},
|
| 108 |
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"method": "cibersortx",
|
| 109 |
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"has_cell_type_expression": true,
|
| 110 |
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"n_case": 14,
|
| 111 |
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"n_control": 10,
|
| 112 |
+
"deg_per_type": {
|
| 113 |
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"zero_filled": {
|
| 114 |
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"bp": {
|
| 115 |
+
"T cell": 0,
|
| 116 |
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"B cell": 0,
|
| 117 |
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"Monocyte": 0,
|
| 118 |
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|
| 119 |
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|
| 120 |
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},
|
| 121 |
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"broadcast": {
|
| 122 |
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"T cell": 0,
|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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}
|
| 128 |
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},
|
| 129 |
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"covered": {
|
| 130 |
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"bp": {
|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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},
|
| 137 |
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"broadcast": {
|
| 138 |
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"T cell": 1,
|
| 139 |
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|
| 140 |
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"Monocyte": 1,
|
| 141 |
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|
| 142 |
+
"DC": null
|
| 143 |
+
}
|
| 144 |
+
}
|
| 145 |
+
},
|
| 146 |
+
"hires_imputed_genes": {
|
| 147 |
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"fewshot4|T cell": 216,
|
| 148 |
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"fewshot4|B cell": 0,
|
| 149 |
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"fewshot4|Monocyte": 2154,
|
| 150 |
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"fewshot4|NK cell": 0,
|
| 151 |
+
"fewshot4|DC": 0,
|
| 152 |
+
"fewshot4|Other": 0
|
| 153 |
+
},
|
| 154 |
+
"tool_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
|
| 155 |
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"score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 156 |
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"seconds": 1.3
|
| 157 |
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}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw4_full/contrast.csv
ADDED
|
@@ -0,0 +1,17 @@
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
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|
|
|
|
|
| 1 |
+
genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
|
| 2 |
+
zero_filled,T cell,mean_cp10k,3051,0.22124368162380229,0.22058892790303236,0.08873738256399594,0.7383498288947038
|
| 3 |
+
zero_filled,T cell,pseudobulk_log1p_cpm,3051,0.28625493512311917,0.22354974300191646,0.19675014427299417,0.8909509389046801
|
| 4 |
+
zero_filled,B cell,mean_cp10k,3274,0.089215046253485,0.1250583519693801,0.0053189955487823685,0.6825471461816163
|
| 5 |
+
zero_filled,B cell,pseudobulk_log1p_cpm,3274,0.051996611741777374,0.03179791067265472,0.05054347708980637,0.8796797194483481
|
| 6 |
+
zero_filled,Monocyte,mean_cp10k,3154,0.399613104981586,0.3600824414237215,0.18960478904574693,0.8550655548287991
|
| 7 |
+
zero_filled,Monocyte,pseudobulk_log1p_cpm,3154,0.35339560580407736,0.34831134154512483,0.07847130464841055,0.9463620007879046
|
| 8 |
+
zero_filled,NK cell,mean_cp10k,3068,0.12413086336578888,0.19608672297995844,-0.042739978913150324,0.7695323488816801
|
| 9 |
+
zero_filled,NK cell,pseudobulk_log1p_cpm,3068,0.04691936834588368,0.07191205216182345,-0.04622098380208959,0.9134059812157062
|
| 10 |
+
covered,T cell,mean_cp10k,2862,0.2460854848419974,0.18640770823134187,0.16892345738478512,0.8473376403954404
|
| 11 |
+
covered,T cell,pseudobulk_log1p_cpm,2862,0.30188321047703026,0.2362847108061807,0.23470340603438927,0.9347889025818369
|
| 12 |
+
covered,B cell,mean_cp10k,3086,0.09275275736701731,0.10693411322037455,0.015235747551568007,0.7784630905085338
|
| 13 |
+
covered,B cell,pseudobulk_log1p_cpm,3086,0.0528190038126005,0.039800660683763735,0.041808159433154204,0.922868050929382
|
| 14 |
+
covered,Monocyte,mean_cp10k,2976,0.4088189950821539,0.3734187292621495,0.18038385755649494,0.9293064370726384
|
| 15 |
+
covered,Monocyte,pseudobulk_log1p_cpm,2976,0.35934304241186843,0.34620786896881595,0.10726518508061551,0.9797709480755937
|
| 16 |
+
covered,NK cell,mean_cp10k,2884,0.1412711576582645,0.155926542331662,0.011748280442490275,0.8692132596384368
|
| 17 |
+
covered,NK cell,pseudobulk_log1p_cpm,2884,0.047506682587710174,0.06658410378658286,-0.05747816805909948,0.9586388840447106
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ji2025_chili/fewshot_draw4_full/per_donor.csv
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
|
| 2 |
+
N032_AC,AC,1.0518299112619596,1.2060593602357448,1.1440589697354004,1.2428595297194003,0.3956190476190475,0.07651788004292369,0.1634497540736224,0.5891156462585034,0.04024620358775522,0.035253924298166706,0.10979591836734694,0.25642553863902334,0.3116321200355093,0.17551020408163265,0.05874856459147244,0.05858185534263727,0.04707482993197279,0.004832086591584744,7.216337367194893e-06,0.025714285714285714,0.5632297265472406,0.43107512991269714,0.0527891156462585
|
| 3 |
+
N038_BC,BC,1.1396868474574853,1.2806330895972382,1.2579477267927242,1.3469780819035455,0.4366545281447101,0.037119364122513196,0.07249120552959602,0.5608711174580507,0.018802977421328637,0.008484410655165366,0.0046411995715815784,0.3339309234409567,0.39057641691670103,0.16565512317029632,0.129556850362801,0.1698702377793998,0.2170653338093538,0.005217165742842817,5.057989037621743e-06,0.034273473759371655,0.4753727189095576,0.3585726711301001,0.017493752231345947
|
| 4 |
+
N038_AC,AC,1.370435067462015,1.3988758228589109,1.402523260674513,1.4532141832699979,0.199869885982562,0.020756330564528126,0.03519537927521656,0.6830985915492958,0.01360350110089658,0.002919235957841577,0.00829979879275654,0.36061798915562543,0.4172894362790523,0.1290241448692153,0.1112733908228483,0.15222536926501032,0.12072434607645875,0.004296954708319118,7.891277382993959e-06,0.03194164989939638,0.48945183364778255,0.3923626879454962,0.026911468812877263
|
| 5 |
+
N055_AC,AC,0.9120540476850811,1.009590584007761,1.0105129697511226,1.0673848901023981,0.8540018570102137,0.0016742648736117582,4.591692918323871e-05,0.340297121634169,0.01646305447594065,0.008240456590701132,0.07799442896935933,0.4794471696623706,0.5626738062290884,0.32474466109563604,0.1036434957929432,0.1652100627732002,0.2051996285979573,0.0029503552491669523,3.0022599180531205e-06,0.0060352831940575676,0.39582165994596674,0.26382675521790905,0.0457288765088208
|
| 6 |
+
N136_TOL,TOL,0.956179995813372,1.0681258918737089,1.065915127122941,1.14159137859501,0.819699604743083,0.0667651421887398,0.0994480530810376,0.48616600790513836,0.017602510702730452,0.017457335131278024,0.10013175230566534,0.3922888461105024,0.4568439801068795,0.19104084321475626,0.060093775348223334,0.08484512725298703,0.0922266139657444,0.0024771369848875643,1.3838612128865018e-06,0.0013175230566534915,0.4607725886649165,0.3414041205666049,0.12911725955204217
|
| 7 |
+
N136_FU1,FU1,0.881368366145377,1.055354221021095,1.0086137306306973,1.1253502471913814,0.8205498234825191,0.037136519007009317,0.10544837204458841,0.4246668944311582,0.030527067129595263,0.028951750195272786,0.14724974376494704,0.4301829549331668,0.4960912982030613,0.19337205329689103,0.07189538124830383,0.09454245758689718,0.09531943969935087,0.0032435923739836457,8.421569248348964e-07,0.0023915271609156134,0.4270144853079411,0.2749652798132554,0.13700034164673727
|
| 8 |
+
N138_TOL,TOL,0.7290595074613123,0.8229704460371075,0.5811799765603646,0.6869438096315501,1.525104828751544,0.02334224456900394,0.0006570083119897317,0.13803860401637746,0.023116082872060247,0.020896029095202787,0.02807564827451745,0.38203160620913107,0.43036857067075984,0.5878338857477091,0.09100554132306225,0.11857697288589218,0.17703255995320724,0.008207295654797529,0.0019964264675192043,0.006044063170208618,0.4722972293719449,0.4275049925686362,0.06297523883798012
|
| 9 |
+
N138_FU1,FU1,0.6305832970191634,0.6787192276480876,0.6913467622502552,0.7125028761408321,0.8522721088435373,0.004759197351372452,7.232424444999798e-05,0.2728998576174656,0.019891726317262954,0.011164541435480122,0.04841006169909824,0.47452517791368604,0.5402248991606556,0.4831514000949217,0.08102704832838357,0.11919395302889714,0.1134314190792596,0.0035506676843305245,2.098055386152773e-06,0.005220692928334125,0.4162461824049645,0.32934218407513094,0.07688656858092074
|
| 10 |
+
N128_BC,BC,0.9745373180838881,1.0533633271276726,1.0485758983490745,1.1111776271160054,0.4963820263112934,0.05703391076670709,0.10287284168763129,0.5158892875448488,0.0261284218690867,0.027226018063925057,0.06817016914402871,0.4155534162097876,0.4792788204677039,0.29420809841107126,0.08536029775476814,0.11445811770290316,0.07842132239876987,0.007531708567156083,8.185973285837511e-06,0.03331624807790876,0.4083922448324943,0.27615601610455076,0.00999487442337263
|
| 11 |
+
N128_AC,AC,0.9951563001580452,1.077296308361666,1.076387810229375,1.1115832036188638,0.4450291190563952,0.070014635661807,0.11829011585346054,0.5488389237007003,0.026327735864097222,0.02718996723664019,0.06524143015112421,0.4056874087921416,0.4700885061067374,0.2790269074824917,0.10144839382108342,0.13439188044036215,0.07077036490969407,0.008577480190793102,0.0005097727284071223,0.029487652045705862,0.3879443456700776,0.2495297576343927,0.006634721710283818
|
| 12 |
+
N147_TOL,TOL,0.7856437877777505,0.9312629462778967,0.8648060929067558,0.9356850160969123,0.2993644859813084,0.04237756503708912,0.09924319262453346,0.44205607476635517,0.006525552583258635,0.0033564717373858835,0.00809968847352025,0.40131631299982934,0.45722949989361455,0.4193146417445483,0.03022733958195347,0.03230331106437774,0.07102803738317758,0.0009622551012887308,9.87382647086974e-07,0.0065420560747663555,0.5185909746965808,0.4078665372974414,0.0529595015576324
|
| 13 |
+
N150_BC,BC,1.4993232730720898,1.5580551999102261,1.5461579973381328,1.5777993210152657,0.1989609535552815,0.033595289084414406,0.07951749460871436,0.802301685162351,0.014592938992300694,0.001891503457321431,0.02301685162351007,0.35500191592651187,0.4034339320091243,0.1385121249486231,0.10586488777322614,0.12903927815446978,0.02178380600082203,0.0038569216599103453,2.1150896579237986e-06,0.005754212905877518,0.4870880465636364,0.3861156766807123,0.008631319358816275
|
| 14 |
+
N159_BC,BC,0.8508224599931806,1.0566512693380328,1.043101153681275,1.2018435675119514,0.1656586398518126,0.32754246249548313,0.47126758579939326,0.6996559936491136,0.009957005781977986,0.009001665621468424,0.018523418893887273,0.22308317199727484,0.24953013947971997,0.08123842286319131,0.038156502830932665,0.00011330962687496346,0.173590897062715,0.0018135781336775126,1.3928667605969009e-06,0.014024874305371792,0.3994472787606539,0.2700859066057827,0.01296639322572109
|
| 15 |
+
N001_TOL,TOL,0.9738602838708603,1.1206128657158643,1.1090972455156805,1.208561378648478,0.6438656769176387,0.07453620420356882,0.15522734571686428,0.51926475786497,0.028697769687363338,0.01923203424343032,0.03375751148815836,0.298755473648384,0.35553748064657115,0.21067515022976316,0.10633529226830803,0.1116709977620733,0.2163308589607635,0.0031889881514383517,4.167510812853502e-06,0.003711558854718982,0.4884862720409373,0.35832797412024825,0.016260162601626018
|
| 16 |
+
N001_FU1,FU1,0.5448958761243344,0.7850385262292827,0.6367480500678115,0.7590602564679729,0.8924287075727587,0.020773680255277056,0.0843698627345989,0.29601935341983726,0.018403849870452686,0.0060535692870740156,0.06575764240158347,0.4359923624021691,0.5108058703987644,0.48823400043985044,0.11827787628859751,0.1605341040256544,0.13591378931163403,0.0010573797688843136,5.251864697469887e-06,0.0010996261271167802,0.4054948514146194,0.23823134168921098,0.012975588299978007
|
| 17 |
+
N012_TOL,TOL,0.6582569699060716,0.7688610032481766,0.7181343083829129,0.7635364975417606,0.841008992895116,0.03478591845196684,0.08418052626489314,0.34759278581010583,0.02559261868376706,0.013713758320650239,0.07884930690117753,0.4489158084603298,0.5254461806087023,0.4672827545088687,0.1150135531570207,0.16502804298850185,0.08570576837084513,0.004217683331552586,1.5537213544783273e-05,0.0005962140408406618,0.37147441791536295,0.21161595460370763,0.01997317036816217
|
| 18 |
+
N012_FU1,FU1,1.047257786668193,1.0422163496142254,1.0651578106958282,1.0910308348506268,0.734175631342031,0.008719760128545688,0.019239235709022827,0.35889219501029984,0.021556821301466886,0.009200482835675724,0.19249256122682537,0.5391862089925616,0.6258461668227436,0.3126573586633097,0.12779757894750868,0.2020934044072646,0.10849164568551156,0.0020738255440797613,2.8003436815792495e-06,0.000686655985351339,0.3006658050858373,0.14361790988161166,0.02677958342870222
|
| 19 |
+
N018_BC,BC,0.6719865443191351,0.943320454262445,0.8402847669160447,1.0138431312902016,0.8344958949096881,0.051125270758945976,0.16162980101929006,0.32939244663382594,0.05718565212057392,0.03683397800579916,0.042692939244663386,0.30970741101916865,0.3848740373816322,0.2889983579638752,0.12583240507623045,0.16110331817732687,0.2653530377668309,0.004255660251991887,6.133101070591091e-06,0.05812807881773399,0.45189360077308915,0.2555527323148811,0.015435139573070607
|
| 20 |
+
N018_AC,AC,1.2387278427938693,1.3727852318112732,1.3194016662145176,1.4080883425118678,0.4732575757575756,0.016698476870992754,0.07925833398588217,0.5900568181818182,0.022429019937580497,0.012067603569990787,0.03664772727272727,0.20259820584280128,0.2578136558572564,0.16164772727272728,0.08947951533210775,0.10776696382678526,0.14914772727272727,0.0034662810445915977,9.08631131631265e-06,0.04261363636363636,0.6653285009719262,0.5430843564487693,0.019886363636363636
|
| 21 |
+
N022_TOL,TOL,1.3488655863239494,1.524269541771292,1.4956849246745134,1.6134402074153076,0.7231498219665843,0.03276392685533121,0.09555063730088263,0.4864420706655711,0.007116597215038006,0.0006521893021510583,0.03697617091207888,0.4106050990385406,0.4856189365754112,0.045740892906053134,0.1396445242715937,0.1710241994626004,0.4182415776499589,0.0018809791384855525,3.871697346599881e-06,0.0,0.4079888734810109,0.24715016566160808,0.01259928786633799
|
| 22 |
+
N022_FU1,FU1,0.6054599856716132,0.8038272353614205,0.8128089469851582,0.9571466554735873,0.7131173365814049,0.16704500979568845,0.23512710833550785,0.48477466504263095,0.013941643728917694,0.009080495457135783,0.048721071863580996,0.2772978319948024,0.34062379260799397,0.20259845716605765,0.20394503939151673,0.23990771396838284,0.25334957369062117,0.002259162612440088,2.853321269099185e-06,0.0,0.3355113124766347,0.17525803630971037,0.010556232237109216
|
| 23 |
+
N035_TOL,TOL,0.9579245414200874,1.0362702519976672,1.0454394549292623,1.0926319633403574,0.8439599499374218,0.016805930296651853,0.03223498759855726,0.2853566958698373,0.012470194472363803,0.0012037788181288134,0.016896120150187734,0.3423097809229219,0.4032279027646897,0.31101376720901125,0.10697849483456758,0.14403973789664645,0.3404255319148936,0.002055811343765838,4.7819228065374744e-06,0.01376720901126408,0.5193797881297288,0.41928881099917126,0.03254067584480601
|
| 24 |
+
N043_TOL,TOL,1.4351272748249193,1.5265258050986397,1.528338032396791,1.5875570562883792,0.8875306975249114,0.02085711170924539,0.03109102055872151,0.3548698167791707,0.012718621206318574,0.004153621463630236,0.05737704918032787,0.3848998393291187,0.4528848458771178,0.04580520732883317,0.09730277883797764,0.14352369413197383,0.4811957569913211,0.0021941691108318664,3.6098469081384734e-06,0.0028929604628736743,0.48202747980650784,0.36834320812164856,0.05785920925747348
|
| 25 |
+
N043_FU1,FU1,0.4602818187761718,0.7570574268928629,0.37459343277509427,0.6287841249749411,1.114739210551838,0.05946823531494594,0.12831866363211206,0.1638056444573756,0.018961555672740788,0.013192789461474867,0.06779167878964212,0.39016939047492216,0.45772868693467,0.5728833284841431,0.10799529799737721,0.1275533303817744,0.14896712249054408,0.0018159982486595301,4.811356959884556e-06,0.0034914169333721268,0.4215895222913543,0.2732017182330088,0.043060808844922895
|