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Archive 4 checkpoints (1-4)

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paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw1/cat.csv ADDED
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+ dataset,design,unit,arm,predictor,celltype,k,k_eff,cat_same_sign,cat_any_sign,chance_same_sign,chance_any_sign,G_both,pred_defined,n_tested_obs,n_tested_pred
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91
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92
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93
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94
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95
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96
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97
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98
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99
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100
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101
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102
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103
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104
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105
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106
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107
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108
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109
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110
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111
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112
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113
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114
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115
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116
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117
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118
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119
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120
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121
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122
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123
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124
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125
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126
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127
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128
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129
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130
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131
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132
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133
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134
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135
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136
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137
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138
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139
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140
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141
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142
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143
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144
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145
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146
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147
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148
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149
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150
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151
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152
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153
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154
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155
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156
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157
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158
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159
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160
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161
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162
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163
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164
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165
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166
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167
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168
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169
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170
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171
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172
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173
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174
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175
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176
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177
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178
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179
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180
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181
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182
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183
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184
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185
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187
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188
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189
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190
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191
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192
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193
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194
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195
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196
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197
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198
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199
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200
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201
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202
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203
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204
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205
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206
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207
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208
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209
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210
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211
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212
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213
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214
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215
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216
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217
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218
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219
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220
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221
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222
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223
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224
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225
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226
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227
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228
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229
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230
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231
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232
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233
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234
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235
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236
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237
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238
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239
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240
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241
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242
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243
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244
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245
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246
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247
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248
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249
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250
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251
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252
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253
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254
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255
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256
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257
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258
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259
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260
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261
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262
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263
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264
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265
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266
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267
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268
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269
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270
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271
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272
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273
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274
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275
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276
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277
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278
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279
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,NK cell,20,20,0.05,0.05,0.008620689655172414,0.017241379310344827,1160,True,4876,1170
280
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,NK cell,50,50,0.06,0.06,0.021551724137931036,0.04310344827586207,1160,True,4876,1170
281
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,NK cell,100,100,0.09,0.09,0.04310344827586207,0.08620689655172414,1160,True,4876,1170
282
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,NK cell,200,200,0.09,0.095,0.08620689655172414,0.1724137931034483,1160,True,4876,1170
283
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,NK cell,500,500,0.126,0.15,0.21551724137931033,0.43103448275862066,1160,True,4876,1170
284
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,NK cell,10,10,0.2,0.2,0.0010302905419328251,0.0020605810838656502,4853,True,4876,5459
285
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,NK cell,20,20,0.15,0.15,0.0020605810838656502,0.0041211621677313005,4853,True,4876,5459
286
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,NK cell,50,50,0.12,0.12,0.005151452709664125,0.01030290541932825,4853,True,4876,5459
287
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,NK cell,100,100,0.11,0.11,0.01030290541932825,0.0206058108386565,4853,True,4876,5459
288
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,NK cell,200,200,0.16,0.16,0.0206058108386565,0.041211621677313,4853,True,4876,5459
289
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,NK cell,500,500,0.2,0.206,0.051514527096641255,0.10302905419328251,4853,True,4876,5459
290
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,DC,10,10,0.1,0.1,0.011961722488038277,0.023923444976076555,418,True,4578,418
291
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,DC,20,20,0.05,0.05,0.023923444976076555,0.04784688995215311,418,True,4578,418
292
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,DC,50,50,0.04,0.06,0.05980861244019139,0.11961722488038277,418,True,4578,418
293
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,DC,100,100,0.04,0.06,0.11961722488038277,0.23923444976076555,418,True,4578,418
294
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,DC,200,200,0.05,0.065,0.23923444976076555,0.4784688995215311,418,True,4578,418
295
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,generated:scsemi5,DC,500,500,0.074,0.104,0.5,1.0,418,True,4578,418
296
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,DC,10,10,0.0,0.0,0.0010972130787798991,0.0021944261575597983,4557,True,4578,5459
297
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,DC,20,20,0.05,0.05,0.0021944261575597983,0.004388852315119597,4557,True,4578,5459
298
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,DC,50,50,0.08,0.08,0.0054860653938994955,0.010972130787798991,4557,True,4578,5459
299
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,DC,100,100,0.06,0.06,0.010972130787798991,0.021944261575597982,4557,True,4578,5459
300
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,DC,200,200,0.095,0.095,0.021944261575597982,0.043888523151195964,4557,True,4578,5459
301
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,broadcast:test_raw.npz@935e890f,DC,500,500,0.162,0.174,0.054860653938994954,0.10972130787798991,4557,True,4578,5459
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw1/ceiling.csv ADDED
@@ -0,0 +1,51 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset,design,unit,predictor,arm,celltype,n_genes,pearson_mean,pearson_sd,spearman_mean,spearman_sd,pearson_s20260926,spearman_s20260926,pearson_s20260927,spearman_s20260927,pearson_s20260928,spearman_s20260928,pearson_s20260929,spearman_s20260929,pearson_s20260930,spearman_s20260930,sb_reliability_pearson,noise_free_ceiling_pearson,sb_reliability_spearman,noise_free_ceiling_spearman,min_n_case_donors_A,min_n_control_donors_A,min_n_case_donors_B,min_n_control_donors_B,mean_n_cells_A,mean_n_cells_B,condition_sha256
2
+ giroux2022,fewshot,fewshot_n5/draw1,split_half_A_vs_B,,T cell,2916.0,0.9728891795362214,0.0006473380633077008,0.9403438639687363,0.000956273653237385,0.9723992800383412,0.9391414361015679,0.9729797877974156,0.941129312291494,0.9729277185924385,0.9410653391573451,0.9722445045458865,0.9394746119243373,0.9738946067070252,0.9409086203689372,0.986258315598775,0.9931053899756939,0.9692548639758911,0.9845074220014246,6.0,4.0,6.0,4.0,29180.0,29182.0,
3
+ giroux2022,fewshot,fewshot_n5/draw1,split_half_A_vs_B,,B cell,3099.0,0.729459891361711,0.008779828574888703,0.5961473124535833,0.013281729943002323,0.7314806568194792,0.6021035457749894,0.7376595021682094,0.604962314146907,0.73738448524886,0.6047573327652028,0.7181959125453947,0.5733895616141135,0.7225789000266116,0.5955238079667037,0.8435695965025959,0.9184604490682198,0.7469828227034898,0.8642816801850481,6.0,4.0,6.0,4.0,3086.0,3091.0,
4
+ giroux2022,fewshot,fewshot_n5/draw1,split_half_A_vs_B,,Monocyte,3045.0,0.9157169506719873,0.003696124127608765,0.7629945132602909,0.00869181198069013,0.910194656258511,0.7512482919698491,0.9143809044089846,0.7592825647934904,0.9192965278373143,0.7707473684841808,0.9159113304730301,0.7613405651363959,0.9188013343820967,0.7723537759175375,0.9560044351549699,0.9777547929593441,0.8655665205098019,0.930358275348697,6.0,4.0,6.0,4.0,9231.0,9236.0,
5
+ giroux2022,fewshot,fewshot_n5/draw1,split_half_A_vs_B,,NK cell,2993.0,0.8604990395346729,0.003408641768183619,0.6709348164553539,0.005259862939022492,0.85987662089608,0.665014788667619,0.8598146187458879,0.6713033618546655,0.8660851143010612,0.6792559244390395,0.8567377931779465,0.6684532295731502,0.8599810505523888,0.6706467777422949,0.9250196009237299,0.9617793930646101,0.8030652181617053,0.896139061843476,6.0,4.0,6.0,4.0,4521.0,4529.0,
6
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_raw,zs_raw,T cell,2916.0,0.68924835772902,0.001468021879229934,0.6061770394419879,0.0031259448728682493,0.6916290006567875,0.6089823689533493,0.6892990261430049,0.6101539377277352,0.688586773466916,0.6038077847243413,0.6876755028339441,0.6041286638336157,0.6890514855444478,0.6038124419708979,,,,,,,,,,,
7
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_raw,zs_raw,B cell,3099.0,0.12019089569210466,0.0062194320606653525,0.04588116205089902,0.0037837156495341448,0.12644310994385913,0.0454623660019662,0.11299326300627806,0.040481012296293424,0.11560214105174743,0.04871658009145764,0.11925264578435663,0.04459455459810069,0.12666331867428204,0.050151297266677115,,,,,,,,,,,
8
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_raw,zs_raw,Monocyte,3045.0,0.27975485216507534,0.004471464355663558,0.14863888528179842,0.006307389229230076,0.27732272172917016,0.1437685579958735,0.2843233938837916,0.1589521284117673,0.2810985140031268,0.15003883683713767,0.27325412970633794,0.14386148654824948,0.2827755015029501,0.14657341661596412,,,,,,,,,,,
9
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_raw,zs_raw,NK cell,2993.0,0.3869770190094501,0.008938375413064886,0.2702724754122831,0.012905749645221627,0.3824545370929955,0.2684198805645678,0.39425699441552864,0.27707096740744497,0.398488812099033,0.2880045293138938,0.3774134165163369,0.2541894811756736,0.3822713349233564,0.2636775185998355,,,,,,,,,,,
10
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_pseudo,zs_pseudo,T cell,2916.0,0.627742214496714,0.0015473248392390533,0.513268746133475,0.003826115990098972,0.6274031981786603,0.5102131906535716,0.6274959010681976,0.5167544506113075,0.6301051578070165,0.5169293317896634,0.6257956274482412,0.5084572301363586,0.6279111879814545,0.513989527476474,,,,,,,,,,,
11
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_pseudo,zs_pseudo,B cell,3099.0,0.16864813440299115,0.008422344146035975,0.09174855829120923,0.006401424185968309,0.1645973853891842,0.08426075732971874,0.15879249439999502,0.09809314158027323,0.164905528729733,0.0857419366322934,0.1769979148823324,0.0935983082407841,0.1779473486137112,0.09704864767297659,,,,,,,,,,,
12
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_pseudo,zs_pseudo,Monocyte,3045.0,0.19618889510169119,0.012436665307953825,0.09400445007402548,0.014057871967617585,0.17611913312293703,0.07073319019388863,0.21006883188865624,0.10785888333744353,0.19948296242102456,0.09410448173159937,0.1956130400507048,0.09605642672375768,0.1996605080251333,0.10126926838343821,,,,,,,,,,,
13
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_pseudo,zs_pseudo,NK cell,2993.0,0.3496067528336055,0.0067867148718458795,0.2154027005322463,0.008167724798873918,0.3483981143662008,0.21595264628765234,0.34046662711398823,0.20163556441680308,0.3595038500878946,0.2227404452410859,0.35060094634634265,0.21662719765684635,0.3490642262536012,0.2200576490588438,,,,,,,,,,,
14
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_cal,zs_cal,T cell,2916.0,0.5624972356792407,0.002424751368312937,0.4417312470358719,0.00315443834439192,0.560185382531954,0.4396492377262073,0.5613566668695061,0.44302674164819755,0.5658058062468523,0.4464927501240937,0.5608494042986293,0.4384755497799521,0.5642889184492617,0.441011955900909,,,,,,,,,,,
15
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_cal,zs_cal,B cell,3099.0,0.1603739354885007,0.008164341486621209,0.11040917698731867,0.006487100704962199,0.15221888022786775,0.10046525384726437,0.15362433882522974,0.10737648586362962,0.16819942786402994,0.11618907442931554,0.16975596018517994,0.11331924098005809,0.15807107034019613,0.11469582981632571,,,,,,,,,,,
16
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_cal,zs_cal,Monocyte,3045.0,0.1800454731835291,0.01312338901106355,0.1116089335680722,0.01699300656535101,0.16022888124311294,0.08266380292395878,0.18684544378121512,0.12678722827849465,0.1936971877731766,0.11747995420261165,0.17409829702842622,0.11230053677175586,0.1853575560917144,0.11881314566354004,,,,,,,,,,,
17
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_cal,zs_cal,NK cell,2993.0,0.3732810765187146,0.006332820147305642,0.21970524577489567,0.010086164434161772,0.3730186574019319,0.2259581841756701,0.3736783270477822,0.21423382173581415,0.382912429353916,0.23399987263983418,0.3715396111616892,0.20901235678630123,0.3652563576282536,0.21532199353685885,,,,,,,,,,,
18
+ giroux2022,fewshot,fewshot_n5/draw1,generated:lora5,lora5,T cell,2916.0,0.614370698372862,0.002034693330385195,0.47839369367495077,0.0025264268332560783,0.6125006378951086,0.4763154514458408,0.6159255465513968,0.48078225532150326,0.6164540293239754,0.4793855318435823,0.6119468599863589,0.4751277092879479,0.6150264181074702,0.48035752047587976,,,,,,,,,,,
19
+ giroux2022,fewshot,fewshot_n5/draw1,generated:lora5,lora5,B cell,3099.0,0.17483874122334636,0.005482237363817846,0.12293461467314279,0.008525121172607522,0.171840105073235,0.12374861647272369,0.17531310376666154,0.11526058610234229,0.17944770548734734,0.13141223527401819,0.16717871698462938,0.11323821136952482,0.1804140748048585,0.13101342414710493,,,,,,,,,,,
20
+ giroux2022,fewshot,fewshot_n5/draw1,generated:lora5,lora5,Monocyte,3045.0,0.3330069517074504,0.006651817470521242,0.18765084353666506,0.008369343085241256,0.3260981163458058,0.17717127903374436,0.341569606340718,0.19882494333331444,0.330335702096328,0.18539251884904628,0.3286022930114736,0.18400673059417832,0.3384290407429266,0.19285874587304191,,,,,,,,,,,
21
+ giroux2022,fewshot,fewshot_n5/draw1,generated:lora5,lora5,NK cell,2993.0,0.2663799431712642,0.0038524658955178385,0.1918495114020244,0.0047889614532164206,0.26706994601885375,0.19495738055862155,0.26914324673319834,0.1962387565439524,0.27080929705607554,0.19399092884254604,0.2619063156896134,0.1846037286982066,0.2629709103585799,0.18945676236679546,,,,,,,,,,,
22
+ giroux2022,fewshot,fewshot_n5/draw1,generated:scsemi5,scsemi5,T cell,2916.0,0.45316636572019114,0.0017317455381128215,0.36526118152222853,0.002369566176462135,0.45145621777726647,0.3664100583231042,0.45216588896481935,0.36359182631469245,0.45536714205289464,0.36887955292037655,0.4546656414541639,0.3632318036173713,0.45217693835181155,0.36419266643559806,,,,,,,,,,,
23
+ giroux2022,fewshot,fewshot_n5/draw1,generated:scsemi5,scsemi5,B cell,3099.0,0.31364003882235036,0.006599519709369541,0.16390126182918857,0.003025874154612103,0.3214869167171475,0.1626335209912968,0.31267206476011117,0.16799308464523702,0.30533232572660896,0.16574380398389607,0.309790162006662,0.1601555360808602,0.31891872490122225,0.16298036344465283,,,,,,,,,,,
24
+ giroux2022,fewshot,fewshot_n5/draw1,generated:scsemi5,scsemi5,Monocyte,3045.0,0.4689487015887811,0.0035975926381097423,0.3128612942233336,0.0076467731019461025,0.4716365427748643,0.3239071898535351,0.4706545554227365,0.3025455132247142,0.47190057867484886,0.31434358784538813,0.4635519708584768,0.3111144505397285,0.46699986021297907,0.3123957296533019,,,,,,,,,,,
25
+ giroux2022,fewshot,fewshot_n5/draw1,generated:scsemi5,scsemi5,NK cell,2993.0,0.4034724479808651,0.006365957301517099,0.2770752264527179,0.003999876411320972,0.3994226649158272,0.27324027036628007,0.4039866646774023,0.2768267051040422,0.41299761530580986,0.27671754140945537,0.40476542171528396,0.28372511314016036,0.39618987329000216,0.2748665022436516,,,,,,,,,,,
26
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:all_usable_raw.npz@ac755a41,,T cell,2916.0,0.6535157062054292,0.0013745427771972823,0.6326708590319079,0.0015861261971441252,0.6515876098768298,0.6340782193932406,0.6550433343824913,0.6336843120694045,0.6543789648585332,0.6306203118774115,0.6527124870921938,0.631306289004149,0.6538561348170981,0.6336651628153337,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
27
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:all_usable_raw.npz@ac755a41,,B cell,3099.0,0.3626377635816714,0.014858324859497094,0.2697207569396975,0.015434797143357696,0.3476241769095608,0.24598768362079154,0.35925451067759695,0.2701744927927042,0.3500639764396979,0.2667728927430137,0.3760572716742647,0.27854225751618616,0.38018888220723646,0.28712645802579173,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
28
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:all_usable_raw.npz@ac755a41,,Monocyte,3045.0,0.45047455276425274,0.01685252868524315,0.3088418478030207,0.022703761010815292,0.42504694237042856,0.2751627998768359,0.4716208900070654,0.33449545508040046,0.45126914242241767,0.30602342302692515,0.4564363118446049,0.3243315258860442,0.4479994771767471,0.30419603514489785,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
29
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:all_usable_raw.npz@ac755a41,,NK cell,2993.0,0.48042023803713574,0.005691766208145584,0.39691248302225873,0.007722981337035163,0.47540311216283804,0.38610371487337125,0.4780688462801964,0.39721817820060223,0.48854250071873156,0.40754194927503,0.4760042444336593,0.3947682645118935,0.4840824865902535,0.39893030825039677,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
30
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:all_usable_pseudo.npz@6400d82f,,T cell,2916.0,0.8708245902895513,0.0012229167160642503,0.8722203670429532,0.0018964289021293932,0.8700906997019643,0.874471158178968,0.8728467538059016,0.8739557970490068,0.871087597059181,0.8716934211151943,0.8698465231890815,0.8703373870664006,0.870251377691628,0.870644071805197,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
31
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:all_usable_pseudo.npz@6400d82f,,B cell,3099.0,0.49173288277653526,0.010904366208277103,0.3955196020645829,0.01079209472165373,0.4946160982960333,0.39139849551727335,0.48785168740979545,0.3893893763050835,0.4790261517280245,0.3896795720200057,0.488663705174955,0.39243554548944576,0.5085067712738681,0.41469502099110617,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
32
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:all_usable_pseudo.npz@6400d82f,,Monocyte,3045.0,0.6558243776324333,0.012578675456331718,0.5011615538816531,0.02146812941802311,0.6354348687019467,0.4672269999139612,0.6701271394532955,0.5244199315201303,0.6579979640750682,0.49778027708535577,0.6581052599746615,0.512705654875981,0.6574566559571945,0.5036749060128369,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
33
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:all_usable_pseudo.npz@6400d82f,,NK cell,2993.0,0.6505433502297209,0.005516252316963009,0.5624913386666202,0.00842785136459037,0.6477928425931633,0.5501455276232814,0.6482852288300673,0.5629844855454149,0.6598599393923746,0.5724802741409607,0.6458424445558784,0.5595542951485946,0.6509362957771213,0.5672921108748493,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
34
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:test_cal.npz@aee9467d,,T cell,2916.0,0.6655583236285434,0.002383191317718897,0.6342302763859119,0.002301851459281573,0.6632700129771508,0.6349613781319218,0.6677900399547567,0.635135897349165,0.6671659222927558,0.6343850754576824,0.6626954427997497,0.6303170096071072,0.6668702001183041,0.6363520213836832,,,,,,,,,,,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9
35
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:test_cal.npz@aee9467d,,B cell,3099.0,0.37819341481538193,0.013686717496073345,0.26246419257304077,0.018017158039668434,0.3653993828783229,0.23634586649736153,0.3757169860680024,0.26467418371026546,0.3655751358737968,0.2559901118746781,0.3881771578907277,0.2703082374481641,0.39609841136605967,0.2850025633347346,,,,,,,,,,,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9
36
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:test_cal.npz@aee9467d,,Monocyte,3045.0,0.4582715372836046,0.01835902751817801,0.28535600117258286,0.02465486545592537,0.4312392312191027,0.24918252343356104,0.4828692994738131,0.3144288034443822,0.4581962237022539,0.2797775161205643,0.46167875843609285,0.30081153414479866,0.4573741735867604,0.2825796287196083,,,,,,,,,,,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9
37
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:test_cal.npz@aee9467d,,NK cell,2993.0,0.5038803339634335,0.004845017174718301,0.38332763504134854,0.006497450057277916,0.5017774285608002,0.3754144015947262,0.5012480275970318,0.38402424472993957,0.5113740192559278,0.3927444483778454,0.4991406202711566,0.3795195788562237,0.5058615741322506,0.38493550164800777,,,,,,,,,,,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9
38
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:test_raw.npz@935e890f,,T cell,2916.0,0.6535157062054292,0.0013745427771972823,0.6326708590319079,0.0015861261971441252,0.6515876098768298,0.6340782193932406,0.6550433343824913,0.6336843120694045,0.6543789648585332,0.6306203118774115,0.6527124870921938,0.631306289004149,0.6538561348170981,0.6336651628153337,,,,,,,,,,,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47
39
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:test_raw.npz@935e890f,,B cell,3099.0,0.3626377635816714,0.014858324859497094,0.2697207569396975,0.015434797143357696,0.3476241769095608,0.24598768362079154,0.35925451067759695,0.2701744927927042,0.3500639764396979,0.2667728927430137,0.3760572716742647,0.27854225751618616,0.38018888220723646,0.28712645802579173,,,,,,,,,,,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47
40
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:test_raw.npz@935e890f,,Monocyte,3045.0,0.45047455276425274,0.01685252868524315,0.3088418478030207,0.022703761010815292,0.42504694237042856,0.2751627998768359,0.4716208900070654,0.33449545508040046,0.45126914242241767,0.30602342302692515,0.4564363118446049,0.3243315258860442,0.4479994771767471,0.30419603514489785,,,,,,,,,,,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47
41
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:test_raw.npz@935e890f,,NK cell,2993.0,0.48042023803713574,0.005691766208145584,0.39691248302225873,0.007722981337035163,0.47540311216283804,0.38610371487337125,0.4780688462801964,0.39721817820060223,0.48854250071873156,0.40754194927503,0.4760042444336593,0.3947682645118935,0.4840824865902535,0.39893030825039677,,,,,,,,,,,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47
42
+ giroux2022,fewshot,fewshot_n5/draw1,split_half_A_vs_B,,mean4,,0.869641265276148,0.003073157424254666,0.742605126534491,0.005158885538845634,0.8684878035031028,0.7393770156285063,0.8712087032801243,0.7441693882716393,0.8739234614949185,0.748956491211442,0.8657723851855644,0.7356644920619992,0.8688139729170306,0.7448582454988684,0.9277129870450176,0.962775006266967,0.846217356337722,0.9188216098446613,,,,,,,
43
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_raw,zs_raw,mean4,,0.36904278114891254,0.0026483435945177133,0.2677423905467421,0.004472250788291205,0.3694623423557031,0.2666582933789392,0.3702181693621508,0.2716645114608102,0.3709440601552058,0.2726419327417076,0.3643989237102439,0.26169354653890986,0.3701904101612591,0.2660536686133437,,,,,,,,,,,
44
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_pseudo,zs_pseudo,mean4,,0.33554649920875046,0.0040065270781165915,0.228606113757739,0.004925679101955326,0.32912945776424557,0.22028994611620784,0.33420596361770927,0.23108550998645683,0.33849937476141717,0.2298790488486605,0.33725188218190527,0.22868479068943667,0.338645817718475,0.23309127314793315,,,,,,,,,,,
45
+ giroux2022,fewshot,fewshot_n5/draw1,generated:zs_cal,zs_cal,mean4,,0.31904943021749627,0.005766914402423701,0.22086365084153964,0.0060720364082378405,0.31141295035121663,0.21218411966827513,0.31887619413093327,0.222856069381534,0.32765371280949374,0.22854041284896376,0.3190608181684812,0.21827692107951682,0.31824347562735644,0.2224607312294084,,,,,,,,,,,
46
+ giroux2022,fewshot,fewshot_n5/draw1,generated:lora5,lora5,mean4,,0.3471490836187307,0.0035360454609174503,0.24520716582169574,0.003956676628553166,0.3443772013332508,0.24304818187773258,0.3504878758479937,0.2477766353252781,0.34926168349093156,0.24754530370229821,0.3424085464180188,0.2392440949874644,0.3492101110034588,0.24842161321570552,,,,,,,,,,,
47
+ giroux2022,fewshot,fewshot_n5/draw1,generated:scsemi5,scsemi5,mean4,,0.4098068885280469,0.001422606776501327,0.27977474100686717,0.0016885030264850163,0.4110005855462764,0.28154775988355407,0.40986979345626734,0.2777392823221715,0.41139941544004055,0.28142112153977905,0.40819329900864665,0.27955672584453006,0.40857134918900373,0.2786088154443011,,,,,,,,,,,
48
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:all_usable_raw.npz@ac755a41,,mean4,,0.48676206514712234,0.006965068305837677,0.4020364866992212,0.009606042163056699,0.47491546032991433,0.38533310444105984,0.49099689533683755,0.40889310953577784,0.4860636461098451,0.4027396442305951,0.49030257876118066,0.4072370842295682,0.4915317451978338,0.405979491059105,,,,,,,,,,,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665
49
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:all_usable_pseudo.npz@6400d82f,,mean4,,0.6672313002320601,0.003789941438067365,0.5828482154139525,0.007210180065993631,0.6619836273232769,0.5708105453083709,0.669777702374765,0.5876873976049088,0.666992913063662,0.5829083860903791,0.6656144832236441,0.5837582206451055,0.671787775174953,0.5890765274209974,,,,,,,,,,,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c
50
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:test_cal.npz@aee9467d,,mean4,,0.5014759024227409,0.006714621540997482,0.39134452629322103,0.010238366427377183,0.49042151390884414,0.37397604241439264,0.506906088273401,0.39956578230843803,0.5005778252811837,0.39072428795769254,0.5029229948494317,0.3952390900140734,0.5065510898008437,0.39721742877150845,,,,,,,,,,,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9
51
+ giroux2022,fewshot,fewshot_n5/draw1,broadcast:test_raw.npz@935e890f,,mean4,,0.48676206514712234,0.006965068305837677,0.4020364866992212,0.009606042163056699,0.47491546032991433,0.38533310444105984,0.49099689533683755,0.40889310953577784,0.4860636461098451,0.4027396442305951,0.49030257876118066,0.4072370842295682,0.4915317451978338,0.405979491059105,,,,,,,,,,,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw1/contrast.csv ADDED
@@ -0,0 +1,51 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset,design,unit,arm,celltype,statistic,label,n_genes,pearson_r_generated,spearman_r_generated,pearson_r_broadcast,spearman_r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,condition,condition_sha256,pearson_r_generated_scorer,pearson_r_broadcast_scorer,partial_r_generated_given_broadcast_scorer,r_generated_vs_broadcast_scorer
2
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,T cell,mean_cp10k,"Zero-shot, real bulk",2916.0,0.6941646975461454,0.6139978247033643,0.6571144835533105,0.6392947831360988,0.5315054403073239,0.5453101812442818,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.6941646975461454,0.6571144835533105,0.5315054403073239,0.5453101812442818
3
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,T cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",2916.0,0.5848005460997957,0.5574358750806251,0.6872156600560435,0.6578344901266384,0.4187479755382132,0.45731346731103817,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.5848005460997957,0.6872156600560435,0.4187479755382132,0.4573134673110381
4
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,B cell,mean_cp10k,"Zero-shot, real bulk",3099.0,0.1138525552225441,0.038178059950753976,0.3825835491576257,0.2894354980491388,0.020369273518178167,0.2499594175518034,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.1138525552225441,0.3825835491576257,0.0203692735181781,0.2499594175518034
5
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,B cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3099.0,0.06128114888974389,0.03408515841482279,0.3771207985959151,0.33190391272473035,0.0064592563971767,0.14680610209963718,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.0612811488897438,0.3771207985959151,0.0064592563971767,0.1468061020996371
6
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,Monocyte,mean_cp10k,"Zero-shot, real bulk",3045.0,0.2807635458190615,0.15048829030302294,0.4614533190457718,0.32603358394924603,0.19689665570699816,0.24105319457250984,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.2807635458190615,0.4614533190457718,0.1968966557069981,0.2410531945725098
7
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,Monocyte,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3045.0,0.19862773577093154,0.19505107917488354,0.5171610414843097,0.4324407618337607,0.14403396632623977,0.14833797869334936,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.1986277357709315,0.5171610414843097,0.1440339663262397,0.1483379786933493
8
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,NK cell,mean_cp10k,"Zero-shot, real bulk",2993.0,0.40631463137063795,0.2915263899227895,0.5038596937916778,0.4307654082031371,0.28825774144163785,0.34203880857736113,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.4063146313706379,0.5038596937916778,0.2882577414416378,0.3420388085773611
9
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,NK cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",2993.0,0.24604810101340488,0.23563506877472945,0.5135427805432597,0.4529732865270942,0.16524222220053855,0.20912533410440912,all_usable_raw.npz@ac755a41,ac755a41a900fac61df07f3a95be029353cfd4869439fa19612e599527d37665,0.2460481010134048,0.5135427805432597,0.1652422222005385,0.2091253341044091
10
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,T cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",2916.0,0.6312748200995737,0.5173313707433845,0.8753248972730474,0.8842801826880555,0.1748837431636346,0.6475744598340504,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.6312748200995737,0.8753248972730474,0.1748837431636346,0.6475744598340504
11
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,T cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",2916.0,0.48005891940408774,0.4648192205144478,0.8993954773674893,0.9039394354882468,0.1520287115772071,0.46847642115217336,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.4800589194040877,0.8993954773674893,0.1520287115772071,0.4684764211521733
12
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,B cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3099.0,0.1691076101921048,0.0949568794644049,0.5167546713330611,0.4173826143801944,0.047836881983849396,0.25052288553203095,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.1691076101921048,0.5167546713330611,0.0478368819838493,0.2505228855320309
13
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,B cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3099.0,0.07809917602680334,0.07292593280483056,0.5287036687086795,0.5018685133649602,0.02195769339125771,0.11269084819828173,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.0780991760268033,0.5287036687086795,0.0219576933912577,0.1126908481982817
14
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,Monocyte,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3045.0,0.19993304579628043,0.10081269351844485,0.6707342448154312,0.5310312159794177,-0.04338563586546226,0.3431437405667999,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.1999330457962804,0.6707342448154312,-0.0433856358654622,0.3431437405667999
15
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,Monocyte,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3045.0,0.16186623961889918,0.18647415106821782,0.7792972513316908,0.7082872650240168,0.018305657414375995,0.1932653966630712,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.1618662396188991,0.7792972513316908,0.0183056574143759,0.1932653966630712
16
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,NK cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",2993.0,0.3686117310542686,0.23299193283864908,0.6774325846019351,0.6149398979129655,0.19799026703155634,0.34211716597682845,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.3686117310542686,0.6774325846019351,0.1979902670315563,0.3421171659768284
17
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,NK cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",2993.0,0.16306271259739602,0.18170244999235732,0.6852871246862202,0.6569572963873721,0.063366535444739,0.17160566148067027,all_usable_pseudo.npz@6400d82f,6400d82fe1115aed544736b06fe6513734b9e1818dce1bc902c6501676f5a86c,0.163062712597396,0.6852871246862202,0.063366535444739,0.1716056614806702
18
+ giroux2022,fewshot,fewshot_n5/draw1,zs_cal,T cell,mean_cp10k,Zero-shot + calibration,2916.0,0.5660225954803184,0.4461611591375792,0.6692760347358511,0.6406591768050691,0.3504310293781072,0.5114065255988911,test_cal.npz@aee9467d,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9,0.5660225954803184,0.6692760347358511,0.3504310293781072,0.5114065255988911
19
+ giroux2022,fewshot,fewshot_n5/draw1,zs_cal,T cell,pseudobulk_log1p_cpm,Zero-shot + calibration,2916.0,0.37283375029012755,0.38034355890282573,0.676533051156422,0.6540586954106222,0.24021218510504905,0.30181494730587677,test_cal.npz@aee9467d,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9,0.3728337502901275,0.676533051156422,0.240212185105049,0.3018149473058767
20
+ giroux2022,fewshot,fewshot_n5/draw1,zs_cal,B cell,mean_cp10k,Zero-shot + calibration,3099.0,0.17328404304446013,0.1191286280212329,0.3985514259692138,0.27965984756705786,0.13436909516309492,0.12812310164068083,test_cal.npz@aee9467d,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9,0.1732840430444601,0.3985514259692138,0.1343690951630949,0.1281231016406808
21
+ giroux2022,fewshot,fewshot_n5/draw1,zs_cal,B cell,pseudobulk_log1p_cpm,Zero-shot + calibration,3099.0,0.08565828993441867,0.06770700865805689,0.36936826314230703,0.32874926558444983,0.06753480313665983,0.06232628800762688,test_cal.npz@aee9467d,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9,0.0856582899344186,0.369368263142307,0.0675348031366598,0.0623262880076268
22
+ giroux2022,fewshot,fewshot_n5/draw1,zs_cal,Monocyte,mean_cp10k,Zero-shot + calibration,3045.0,0.18521681364938677,0.11852195786235548,0.46949134399972037,0.3022195047232143,0.05135267309829613,0.3024533407442592,test_cal.npz@aee9467d,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9,0.1852168136493867,0.4694913439997203,0.0513526730982961,0.3024533407442592
23
+ giroux2022,fewshot,fewshot_n5/draw1,zs_cal,Monocyte,pseudobulk_log1p_cpm,Zero-shot + calibration,3045.0,0.15854395249097372,0.17702683963600221,0.5091532072274922,0.42957712765552625,0.06760951974955515,0.19939492717030466,test_cal.npz@aee9467d,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9,0.1585439524909737,0.5091532072274922,0.0676095197495551,0.1993949271703046
24
+ giroux2022,fewshot,fewshot_n5/draw1,zs_cal,NK cell,mean_cp10k,Zero-shot + calibration,2993.0,0.39221372905905666,0.2384497222815027,0.5274965679040063,0.41450912256722716,0.2820207651504384,0.31200446993721603,test_cal.npz@aee9467d,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9,0.3922137290590566,0.5274965679040063,0.2820207651504384,0.312004469937216
25
+ giroux2022,fewshot,fewshot_n5/draw1,zs_cal,NK cell,pseudobulk_log1p_cpm,Zero-shot + calibration,2993.0,0.20674129818289633,0.20669541151518223,0.5033718131915353,0.4490109575550681,0.14071135991467548,0.17280663667929932,test_cal.npz@aee9467d,aee9467d085b2920927a47b872feab2433f356aceb23a02d102c654ea3f4f0e9,0.2067412981828963,0.5033718131915353,0.1407113599146754,0.1728066366792993
26
+ giroux2022,fewshot,fewshot_n5/draw1,lora5,T cell,mean_cp10k,"LoRA, 5 donors",2916.0,0.6190149906278537,0.4842497968656939,0.6571144835533105,0.6392947831360988,0.43647215235676673,0.5119104165262065,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.6190149906278537,0.6571144835533105,0.4364721523567667,0.5119104165262065
27
+ giroux2022,fewshot,fewshot_n5/draw1,lora5,T cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",2916.0,0.41210524919076585,0.38817388055777213,0.6872156600560435,0.6578344901266384,0.2543133425254034,0.3476041197463897,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.4121052491907658,0.6872156600560435,0.2543133425254034,0.3476041197463897
28
+ giroux2022,fewshot,fewshot_n5/draw1,lora5,B cell,mean_cp10k,"LoRA, 5 donors",3099.0,0.18636163778663511,0.12942061284237524,0.3825835491576257,0.2894354980491388,0.12967906009134003,0.17900300106071865,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.1863616377866351,0.3825835491576257,0.12967906009134,0.1790030010607186
29
+ giroux2022,fewshot,fewshot_n5/draw1,lora5,B cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",3099.0,0.09727762653045537,0.10027029866562817,0.3771207985959151,0.33190391272473035,0.07077773121734002,0.08475184551791713,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.0972776265304553,0.3771207985959151,0.07077773121734,0.0847518455179171
30
+ giroux2022,fewshot,fewshot_n5/draw1,lora5,Monocyte,mean_cp10k,"LoRA, 5 donors",3045.0,0.3400981738976318,0.19811848375709284,0.4614533190457718,0.32603358394924603,0.25228547745447666,0.26999903579151696,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.3400981738976318,0.4614533190457718,0.2522854774544766,0.2699990357915169
31
+ giroux2022,fewshot,fewshot_n5/draw1,lora5,Monocyte,pseudobulk_log1p_cpm,"LoRA, 5 donors",3045.0,0.1950671942165009,0.18019072076714704,0.5171610414843097,0.4324407618337607,0.12384560431737007,0.17540487127245716,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.1950671942165009,0.5171610414843097,0.12384560431737,0.1754048712724571
32
+ giroux2022,fewshot,fewshot_n5/draw1,lora5,NK cell,mean_cp10k,"LoRA, 5 donors",2993.0,0.27992358582529364,0.20457798232665925,0.5038596937916778,0.4307654082031371,0.19086360661182158,0.23773491541905134,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.2799235858252936,0.5038596937916778,0.1908636066118215,0.2377349154190513
33
+ giroux2022,fewshot,fewshot_n5/draw1,lora5,NK cell,pseudobulk_log1p_cpm,"LoRA, 5 donors",2993.0,0.139343278522147,0.1379974410991667,0.5135427805432597,0.4529732865270942,0.09186844677398488,0.11892624536135482,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.139343278522147,0.5135427805432597,0.0918684467739848,0.1189262453613548
34
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,T cell,mean_cp10k,"scSemiProfiler, 5 donors",2916.0,0.4562171383601076,0.3676902292995136,0.6571144835533105,0.6392947831360988,0.20765424483777878,0.48610630415923417,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.4562171383601076,0.6571144835533105,0.2076542448377787,0.4861063041592341
35
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,T cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",2916.0,0.3556440034460052,0.3470008360311167,0.6872156600560435,0.6578344901266384,0.08653999191136928,0.43514856124797224,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.3556440034460052,0.6872156600560435,0.0865399919113692,0.4351485612479722
36
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,B cell,mean_cp10k,"scSemiProfiler, 5 donors",3099.0,0.3392503914095476,0.1808690933409808,0.3825835491576257,0.2894354980491388,0.25237346474498956,0.30662320516840946,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.3392503914095476,0.3825835491576257,0.2523734647449895,0.3066232051684094
37
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,B cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",3099.0,0.15672968416204563,0.1468581240612792,0.3771207985959151,0.33190391272473035,0.06763673620235408,0.25497800111235913,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.1567296841620456,0.3771207985959151,0.067636736202354,0.2549780011123591
38
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,Monocyte,mean_cp10k,"scSemiProfiler, 5 donors",3045.0,0.47778809227022345,0.3174669929273333,0.4614533190457718,0.32603358394924603,0.3905461710255437,0.3254265465033344,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.4777880922702234,0.4614533190457718,0.3905461710255437,0.3254265465033344
39
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,Monocyte,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",3045.0,0.2038565958854147,0.1826075980375165,0.5171610414843097,0.4324407618337607,0.1464052125016029,0.15480814393810313,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.2038565958854147,0.5171610414843097,0.1464052125016029,0.1548081439381031
40
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,NK cell,mean_cp10k,"scSemiProfiler, 5 donors",2993.0,0.4216522328772526,0.2952434844106515,0.5038596937916778,0.4307654082031371,0.23990202837729838,0.47491019091290076,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.4216522328772526,0.5038596937916778,0.2399020283772983,0.4749101909129007
41
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,NK cell,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",2993.0,0.27377399433707766,0.2582298430559026,0.5135427805432597,0.4529732865270942,0.08359982696393849,0.40541842200148814,test_raw.npz@935e890f,935e890f67fc789b9ecf47b5c90157bfe0a1983d6ffdb1ea2d198b6de9767f47,0.2737739943370776,0.5135427805432597,0.0835998269639384,0.4054184220014881
42
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,mean4,mean_cp10k,"Zero-shot, real bulk",,0.37377385748959724,0.27354764121998265,0.5012527613870964,0.4213823183344052,0.2592572777435345,0.34459040048648903,,,0.3737738574895972,0.5012527613870964,0.25925727774353446,0.34459040048648903
43
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,mean4,pseudobulk_log1p_cpm,"Zero-shot, real bulk",,0.272689382943469,0.2555517953612652,0.523760070169882,0.4687881128030559,0.18362085511554205,0.24039572055210848,,,0.27268938294346895,0.523760070169882,0.18362085511554202,0.2403957205521084
44
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,mean4,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",,0.3422318017855569,0.23652321914122085,0.6850615995058686,0.6119084777401583,0.09433131407839451,0.39583956297742745,,,0.3422318017855569,0.6850615995058686,0.0943313140783945,0.3958395629774274
45
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,mean4,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",,0.2207717619117966,0.22648043859496336,0.72317088052352,0.692763127566149,0.06391464945689496,0.23650958187354912,,,0.22077176191179654,0.72317088052352,0.06391464945689493,0.2365095818735491
46
+ giroux2022,fewshot,fewshot_n5/draw1,zs_cal,mean4,mean_cp10k,Zero-shot + calibration,,0.3291842953083055,0.23056536682566758,0.5162038431521979,0.40926191291564207,0.20454339069748417,0.3134968594802618,,,0.32918429530830545,0.5162038431521979,0.20454339069748415,0.31349685948026174
47
+ giroux2022,fewshot,fewshot_n5/draw1,zs_cal,mean4,pseudobulk_log1p_cpm,Zero-shot + calibration,,0.20594432272460406,0.20794320467801677,0.5146065836794391,0.4653490115514166,0.12901696697648488,0.18408569979077688,,,0.20594432272460403,0.5146065836794391,0.12901696697648482,0.18408569979077685
48
+ giroux2022,fewshot,fewshot_n5/draw1,lora5,mean4,mean_cp10k,"LoRA, 5 donors",,0.35634959703435354,0.25409171894795535,0.5012527613870964,0.4213823183344052,0.2523250741286013,0.29966184219937336,,,0.35634959703435354,0.5012527613870964,0.2523250741286012,0.29966184219937336
49
+ giroux2022,fewshot,fewshot_n5/draw1,lora5,mean4,pseudobulk_log1p_cpm,"LoRA, 5 donors",,0.21094833711496727,0.2016580852724285,0.523760070169882,0.4687881128030559,0.1352012812085246,0.1816717704745297,,,0.21094833711496724,0.523760070169882,0.13520128120852454,0.18167177047452968
50
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,mean4,mean_cp10k,"scSemiProfiler, 5 donors",,0.42372696372928276,0.29031744999461984,0.5012527613870964,0.4213823183344052,0.2726189772464026,0.3982665616859697,,,0.42372696372928276,0.5012527613870964,0.27261897724640255,0.3982665616859697
51
+ giroux2022,fewshot,fewshot_n5/draw1,scsemi5,mean4,pseudobulk_log1p_cpm,"scSemiProfiler, 5 donors",,0.24750106945763584,0.23367410029645375,0.523760070169882,0.4687881128030559,0.09604544189481619,0.3125882820749807,,,0.24750106945763578,0.523760070169882,0.09604544189481612,0.3125882820749806
paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/fewshot_n5/draw1/deg_limma.csv ADDED
@@ -0,0 +1,76 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset,design,unit,arm,celltype,method,deg_scored,pred_defined,overlap,overlap_scorer,obs_list_size,gen_list_size,n_sig_obs,n_sig_gen,n_tested_obs,n_tested_gen,G_both,chance_overlap,broadcast_overlap,broadcast_overlap_scorer,broadcast_list_size,n_sig_broadcast,n_tested_broadcast,G_both_broadcast,broadcast_chance_overlap,condition
2
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,T cell,welch,True,True,0,0.0,50,0,84,0,5224,3949,3943,0.0,0,0.0,3,3,5459,5194,0.02887947631882942,all_usable_raw.npz@ac755a41
3
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,B cell,welch,True,True,0,0.0,0,0,0,0,4886,3418,3411,0.0,0,0.0,3,3,5459,4862,0.0,all_usable_raw.npz@ac755a41
4
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,Monocyte,welch,True,True,0,0.0,0,0,0,0,5098,3750,3733,0.0,0,0.0,3,3,5459,5068,0.0,all_usable_raw.npz@ac755a41
5
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,NK cell,welch,True,True,0,0.0,0,0,0,0,4876,3310,3301,0.0,0,0.0,3,3,5459,4853,0.0,all_usable_raw.npz@ac755a41
6
+ giroux2022,fewshot,fewshot_n5/draw1,zs_raw,DC,welch,True,True,0,0.0,0,0,0,0,4578,3225,3210,0.0,0,0.0,3,3,5459,4557,0.0,all_usable_raw.npz@ac755a41
7
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,T cell,welch,True,True,1,1.0,50,12,84,12,5224,3540,3536,0.16968325791855204,0,0.0,0,0,5329,5224,0.0,all_usable_pseudo.npz@6400d82f
8
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,B cell,welch,True,True,0,0.0,0,1,0,1,4886,2495,2492,0.0,0,0.0,0,0,5329,4886,0.0,all_usable_pseudo.npz@6400d82f
9
+ giroux2022,fewshot,fewshot_n5/draw1,zs_pseudo,Monocyte,welch,True,True,0,0.0,0,0,0,0,5098,2924,2922,0.0,0,0.0,0,0,5329,5098,0.0,all_usable_pseudo.npz@6400d82f
10
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14
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15
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21
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22
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24
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25
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26
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27
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29
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30
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31
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32
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33
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34
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35
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36
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37
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38
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39
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40
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41
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42
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43
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44
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45
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46
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47
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48
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49
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50
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51
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52
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53
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54
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55
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56
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57
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59
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62
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