Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1/summary.json +147 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1_cibersortx/contrast.csv +17 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1_cibersortx/per_donor.csv +11 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1_cibersortx/summary.json +157 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1/summary.json
ADDED
|
@@ -0,0 +1,147 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset": "giroux2022",
|
| 3 |
+
"comparison": "fewshot",
|
| 4 |
+
"draw": 1,
|
| 5 |
+
"gene_mode": "score",
|
| 6 |
+
"stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_nosex/giroux2022/fewshot_n5/draw1",
|
| 7 |
+
"lora_arm": "lora5",
|
| 8 |
+
"n_donors": 10,
|
| 9 |
+
"contrast": true,
|
| 10 |
+
"genes_scoring": 5563,
|
| 11 |
+
"genes_covered_by_Z_all_donors": 5397,
|
| 12 |
+
"bayesprism": {
|
| 13 |
+
"comp_l1": 1.7599169676086206,
|
| 14 |
+
"comp_l1_by_variant": {
|
| 15 |
+
"final_cells": 1.7599169676086206,
|
| 16 |
+
"first_cells": 0.7385246862506405,
|
| 17 |
+
"final_mrna": 1.5255549689756318,
|
| 18 |
+
"first_mrna": 0.4823111070328001
|
| 19 |
+
},
|
| 20 |
+
"mean_fraction": {
|
| 21 |
+
"final_cells": {
|
| 22 |
+
"T cell": 0.0042,
|
| 23 |
+
"B cell": 0.0053,
|
| 24 |
+
"Monocyte": 0.0478,
|
| 25 |
+
"NK cell": 0.007,
|
| 26 |
+
"DC": 0.0,
|
| 27 |
+
"Other": 0.9358
|
| 28 |
+
},
|
| 29 |
+
"first_cells": {
|
| 30 |
+
"T cell": 0.5618,
|
| 31 |
+
"B cell": 0.0041,
|
| 32 |
+
"Monocyte": 0.0789,
|
| 33 |
+
"NK cell": 0.0096,
|
| 34 |
+
"DC": 0.0007,
|
| 35 |
+
"Other": 0.3449
|
| 36 |
+
},
|
| 37 |
+
"final_mrna": {
|
| 38 |
+
"T cell": 0.0066,
|
| 39 |
+
"B cell": 0.0121,
|
| 40 |
+
"Monocyte": 0.1655,
|
| 41 |
+
"NK cell": 0.0123,
|
| 42 |
+
"DC": 0.0,
|
| 43 |
+
"Other": 0.8035
|
| 44 |
+
},
|
| 45 |
+
"first_mrna": {
|
| 46 |
+
"T cell": 0.5526,
|
| 47 |
+
"B cell": 0.0067,
|
| 48 |
+
"Monocyte": 0.2001,
|
| 49 |
+
"NK cell": 0.0134,
|
| 50 |
+
"DC": 0.0033,
|
| 51 |
+
"Other": 0.2239
|
| 52 |
+
}
|
| 53 |
+
},
|
| 54 |
+
"logfc_r_mean_cp10k": 0.4000648137127926,
|
| 55 |
+
"partial_r_mean_cp10k": 0.09411226085159383,
|
| 56 |
+
"logfc_r_mean_cp10k_covered_genes": 0.4028078113970014,
|
| 57 |
+
"deg_top50_sum": 0,
|
| 58 |
+
"deg_top50_sum_covered_genes": 0,
|
| 59 |
+
"per_type_logfc_r": {
|
| 60 |
+
"T cell": 0.4506,
|
| 61 |
+
"B cell": 0.1739,
|
| 62 |
+
"Monocyte": 0.5981,
|
| 63 |
+
"NK cell": 0.3777
|
| 64 |
+
}
|
| 65 |
+
},
|
| 66 |
+
"observed_mean_fraction": {
|
| 67 |
+
"T cell": 0.5703,
|
| 68 |
+
"B cell": 0.0556,
|
| 69 |
+
"Monocyte": 0.2119,
|
| 70 |
+
"NK cell": 0.0933,
|
| 71 |
+
"DC": 0.0131,
|
| 72 |
+
"Other": 0.0558
|
| 73 |
+
},
|
| 74 |
+
"lora": {
|
| 75 |
+
"comp_l1": 0.22320689222847964,
|
| 76 |
+
"coverage": 0.9526666666666667,
|
| 77 |
+
"logfc_r_mean_cp10k": 0.35634959703435354,
|
| 78 |
+
"deg_top50_sum": 1,
|
| 79 |
+
"partial_r_mean_cp10k": 0.2523250741286013
|
| 80 |
+
},
|
| 81 |
+
"broadcast": {
|
| 82 |
+
"logfc_r_mean_cp10k": 0.5012527613870964,
|
| 83 |
+
"logfc_r_mean_cp10k_covered_genes": 0.5013362659252331,
|
| 84 |
+
"deg_top50_sum": 0
|
| 85 |
+
},
|
| 86 |
+
"other_arms": {
|
| 87 |
+
"zs_raw": {
|
| 88 |
+
"comp_l1": 0.36837834377115714,
|
| 89 |
+
"logfc_r_mean_cp10k": 0.37377385748959724,
|
| 90 |
+
"deg_top50_sum": 0
|
| 91 |
+
},
|
| 92 |
+
"zs_pseudo": {
|
| 93 |
+
"comp_l1": 0.28517222575909135,
|
| 94 |
+
"logfc_r_mean_cp10k": 0.3422318017855569,
|
| 95 |
+
"deg_top50_sum": 1
|
| 96 |
+
},
|
| 97 |
+
"zs_cal": {
|
| 98 |
+
"comp_l1": 0.33804778238014854,
|
| 99 |
+
"logfc_r_mean_cp10k": 0.3291842953083055,
|
| 100 |
+
"deg_top50_sum": 0
|
| 101 |
+
}
|
| 102 |
+
},
|
| 103 |
+
"gates": {
|
| 104 |
+
"observed_composition_equal": true,
|
| 105 |
+
"broadcast_r_equal": true,
|
| 106 |
+
"broadcast_deg_equal": true
|
| 107 |
+
},
|
| 108 |
+
"n_case": 6,
|
| 109 |
+
"n_control": 4,
|
| 110 |
+
"deg_per_type": {
|
| 111 |
+
"zero_filled": {
|
| 112 |
+
"bp": {
|
| 113 |
+
"T cell": 0,
|
| 114 |
+
"B cell": 0,
|
| 115 |
+
"Monocyte": 0,
|
| 116 |
+
"NK cell": 0,
|
| 117 |
+
"DC": 0
|
| 118 |
+
},
|
| 119 |
+
"broadcast": {
|
| 120 |
+
"T cell": 0,
|
| 121 |
+
"B cell": 0,
|
| 122 |
+
"Monocyte": 0,
|
| 123 |
+
"NK cell": 0,
|
| 124 |
+
"DC": 0
|
| 125 |
+
}
|
| 126 |
+
},
|
| 127 |
+
"covered": {
|
| 128 |
+
"bp": {
|
| 129 |
+
"T cell": 0,
|
| 130 |
+
"B cell": 0,
|
| 131 |
+
"Monocyte": 0,
|
| 132 |
+
"NK cell": 0,
|
| 133 |
+
"DC": 0
|
| 134 |
+
},
|
| 135 |
+
"broadcast": {
|
| 136 |
+
"T cell": 0,
|
| 137 |
+
"B cell": 0,
|
| 138 |
+
"Monocyte": 0,
|
| 139 |
+
"NK cell": 0,
|
| 140 |
+
"DC": 0
|
| 141 |
+
}
|
| 142 |
+
}
|
| 143 |
+
},
|
| 144 |
+
"tool_sha256": "15ed044bbfc39c501c7187ad78586902f2aa0635e7b3a90786b4587cedc2008a",
|
| 145 |
+
"score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 146 |
+
"seconds": 0.6
|
| 147 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1_cibersortx/contrast.csv
ADDED
|
@@ -0,0 +1,17 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
|
| 2 |
+
zero_filled,T cell,mean_cp10k,2916,,0.6571144835533105,,
|
| 3 |
+
zero_filled,T cell,pseudobulk_log1p_cpm,2916,,0.6872156600560435,,
|
| 4 |
+
zero_filled,B cell,mean_cp10k,3099,,0.3825835491576257,,
|
| 5 |
+
zero_filled,B cell,pseudobulk_log1p_cpm,3099,,0.3771207985959151,,
|
| 6 |
+
zero_filled,Monocyte,mean_cp10k,3045,,0.4614533190457718,,
|
| 7 |
+
zero_filled,Monocyte,pseudobulk_log1p_cpm,3045,,0.5171610414843097,,
|
| 8 |
+
zero_filled,NK cell,mean_cp10k,2993,,0.5038596937916778,,
|
| 9 |
+
zero_filled,NK cell,pseudobulk_log1p_cpm,2993,,0.5135427805432597,,
|
| 10 |
+
covered,T cell,mean_cp10k,0,,,,
|
| 11 |
+
covered,T cell,pseudobulk_log1p_cpm,0,,,,
|
| 12 |
+
covered,B cell,mean_cp10k,0,,,,
|
| 13 |
+
covered,B cell,pseudobulk_log1p_cpm,0,,,,
|
| 14 |
+
covered,Monocyte,mean_cp10k,0,,,,
|
| 15 |
+
covered,Monocyte,pseudobulk_log1p_cpm,0,,,,
|
| 16 |
+
covered,NK cell,mean_cp10k,0,,,,
|
| 17 |
+
covered,NK cell,pseudobulk_log1p_cpm,0,,,,
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1_cibersortx/per_donor.csv
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
|
| 2 |
+
450905_d0,mild,0.48040333691392945,0.48040333691392945,0.47233803664129986,0.47233803664129986,0.2732030210799233,0.1979254018506491,0.1979254018506491,0.30943523841731485,0.0,0.0,0.036185322962461956,0.3971156412145137,0.3971156412145137,0.4293202570172472,0.0705739945989411,0.0705739945989411,0.12089956036523504,0.0,0.0,0.009976327358809604,0.33438496233589604,0.33438496233589604,0.09418329387893135
|
| 3 |
+
450905_d14,mild,0.8601221887752821,0.8601221887752821,0.4928186070897673,0.4928186070897673,0.1901714594302686,0.2083656462956876,0.2083656462956876,0.4422843256379101,0.016476524426092456,0.016476524426092456,0.02929661131362225,0.15112895182668432,0.15112895182668432,0.27420008100445525,0.1081965817321163,0.1081965817321163,0.15782368030241664,0.019212540605438363,0.019212540605438363,0.02983664101525584,0.49661975511398104,0.49661975511398104,0.06655866072633995
|
| 4 |
+
0B943B_d0,mild,0.8068123524848028,0.8068123524848028,0.7699256611440359,0.7699256611440359,0.3049003291020217,0.3901575276935418,0.3901575276935418,0.6220028208744711,0.0,0.0,0.08312764456981664,0.18986044606274177,0.18986044606274177,0.12588152327221439,0.04122216781916679,0.04122216781916679,0.11865303244005641,0.012975059133465586,0.012975059133465586,0.023977433004231313,0.36578479929108415,0.36578479929108415,0.026357545839210156
|
| 5 |
+
0B943B_d14,mild,0.8223038804276732,0.8223038804276732,0.768222479952738,0.768222479952738,0.1230415335463258,0.21064057845036369,0.21064057845036369,0.5652396166134185,0.06744807669829339,0.06744807669829339,0.11175718849840256,0.20655360680795484,0.20655360680795484,0.17086261980830672,0.0956156346694552,0.0956156346694552,0.09789137380191694,0.0,0.0,0.009968051118210863,0.41974210337393286,0.41974210337393286,0.04428115015974441
|
| 6 |
+
180E1A_d0,severe,0.6247655426593404,0.6247655426593404,0.4475258220140117,0.4475258220140117,0.0775123655162778,0.502034139882254,0.502034139882254,0.7019700992035769,0.016671666933361598,0.016671666933361598,0.04135811094033813,0.10502085272265907,0.10502085272265907,0.13175911694844208,0.011547458429936203,0.011547458429936203,0.0655302501047925,0.006234405937552766,0.006234405937552766,0.013273718038284197,0.35849147609423637,0.35849147609423637,0.04610870476456616
|
| 7 |
+
180E1A_d7,severe,0.5832501221664406,0.5832501221664406,0.34128931985105787,0.34128931985105787,0.0691422276775878,0.5447579278800564,0.5447579278800564,0.7348692285903126,0.02575107663985436,0.02575107663985436,0.04909829100179398,0.05775838921284434,0.05775838921284434,0.09064299877254273,0.043109554230274176,0.043109554230274176,0.08280615617033331,0.004895262221808251,0.004895262221808251,0.010480596733075253,0.3237277898151625,0.3237277898151625,0.03210272873194221
|
| 8 |
+
180E1A_d14,severe,0.49646027614463994,0.49646027614463994,0.3912661555451725,0.3912661555451725,0.1437783284043375,0.5707487982584382,0.5707487982584382,0.680840860043162,0.009764183294763067,0.009764183294763067,0.05147470226200943,0.11065535745234335,0.11065535745234335,0.12277196067460634,0.0,0.0,0.0800095915594277,0.0055299858747372395,0.0055299858747372395,0.009831348413396212,0.3033016751197183,0.3033016751197183,0.05507153704739829
|
| 9 |
+
0BF51C_d0,severe,0.47512002604382686,0.47512002604382686,0.44834374454304204,0.44834374454304204,0.6071643625192013,0.29332125374058327,0.29332125374058327,0.4012288786482335,0.008261681771207953,0.008261681771207953,0.01674347158218126,0.4015897274834343,0.4015897274834343,0.4609831029185868,0.02069919805748135,0.02069919805748135,0.07726574500768049,0.0009337173232291348,0.0009337173232291348,0.006144393241167435,0.27519442162406393,0.27519442162406393,0.03763440860215054
|
| 10 |
+
0BF51C_d7,severe,0.24997362195041428,0.24997362195041428,0.11594608909796368,0.11594608909796368,0.2612772554840838,0.6249412131758341,0.6249412131758341,0.612370113805047,0.057099867947131434,0.057099867947131434,0.05700148441365661,0.0925038818859227,0.0925038818859227,0.1607125185551707,0.0034890201522298344,0.0034890201522298344,0.05294408708560119,0.0,0.0,0.0073231073725878275,0.2219660168388819,0.2219660168388819,0.10964868876793667
|
| 11 |
+
0BF51C_d14,severe,0.382548623550903,0.382548623550903,0.19980396662389976,0.19980396662389976,0.1818780395247686,0.5900982249405436,0.5900982249405436,0.6330676941938874,0.08308448765444904,0.08308448765444904,0.07960416849111131,0.07756341127663184,0.07756341127663184,0.151589456169542,0.01530873192680552,0.01530873192680552,0.07907872843506436,0.0,0.0,0.010508801120938787,0.2339451442015699,0.2339451442015699,0.04615115158945617
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/giroux2022/fewshot_draw1_cibersortx/summary.json
ADDED
|
@@ -0,0 +1,157 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset": "giroux2022",
|
| 3 |
+
"comparison": "fewshot",
|
| 4 |
+
"draw": 1,
|
| 5 |
+
"gene_mode": "cibersortx",
|
| 6 |
+
"stored_scores": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores_nosex/giroux2022/fewshot_n5/draw1",
|
| 7 |
+
"lora_arm": "lora5",
|
| 8 |
+
"n_donors": 10,
|
| 9 |
+
"contrast": true,
|
| 10 |
+
"genes_scoring": 5563,
|
| 11 |
+
"genes_covered_by_Z_all_donors": 0,
|
| 12 |
+
"bayesprism": {
|
| 13 |
+
"comp_l1": 0.5781759971117253,
|
| 14 |
+
"comp_l1_by_variant": {
|
| 15 |
+
"final_cells": 0.5781759971117253,
|
| 16 |
+
"first_cells": 0.5781759971117253,
|
| 17 |
+
"final_mrna": 0.44474798825029893,
|
| 18 |
+
"first_mrna": 0.44474798825029893
|
| 19 |
+
},
|
| 20 |
+
"mean_fraction": {
|
| 21 |
+
"final_cells": {
|
| 22 |
+
"T cell": 0.4133,
|
| 23 |
+
"B cell": 0.0285,
|
| 24 |
+
"Monocyte": 0.179,
|
| 25 |
+
"NK cell": 0.041,
|
| 26 |
+
"DC": 0.005,
|
| 27 |
+
"Other": 0.3333
|
| 28 |
+
},
|
| 29 |
+
"first_cells": {
|
| 30 |
+
"T cell": 0.4133,
|
| 31 |
+
"B cell": 0.0285,
|
| 32 |
+
"Monocyte": 0.179,
|
| 33 |
+
"NK cell": 0.041,
|
| 34 |
+
"DC": 0.005,
|
| 35 |
+
"Other": 0.3333
|
| 36 |
+
},
|
| 37 |
+
"final_mrna": {
|
| 38 |
+
"T cell": 0.4252,
|
| 39 |
+
"B cell": 0.0381,
|
| 40 |
+
"Monocyte": 0.3121,
|
| 41 |
+
"NK cell": 0.0475,
|
| 42 |
+
"DC": 0.0163,
|
| 43 |
+
"Other": 0.1608
|
| 44 |
+
},
|
| 45 |
+
"first_mrna": {
|
| 46 |
+
"T cell": 0.4252,
|
| 47 |
+
"B cell": 0.0381,
|
| 48 |
+
"Monocyte": 0.3121,
|
| 49 |
+
"NK cell": 0.0475,
|
| 50 |
+
"DC": 0.0163,
|
| 51 |
+
"Other": 0.1608
|
| 52 |
+
}
|
| 53 |
+
},
|
| 54 |
+
"logfc_r_mean_cp10k": NaN,
|
| 55 |
+
"partial_r_mean_cp10k": NaN,
|
| 56 |
+
"logfc_r_mean_cp10k_covered_genes": NaN,
|
| 57 |
+
"deg_top50_sum": 0,
|
| 58 |
+
"deg_top50_sum_covered_genes": 0,
|
| 59 |
+
"per_type_logfc_r": {
|
| 60 |
+
"T cell": NaN,
|
| 61 |
+
"B cell": NaN,
|
| 62 |
+
"Monocyte": NaN,
|
| 63 |
+
"NK cell": NaN
|
| 64 |
+
}
|
| 65 |
+
},
|
| 66 |
+
"observed_mean_fraction": {
|
| 67 |
+
"T cell": 0.5703,
|
| 68 |
+
"B cell": 0.0556,
|
| 69 |
+
"Monocyte": 0.2119,
|
| 70 |
+
"NK cell": 0.0933,
|
| 71 |
+
"DC": 0.0131,
|
| 72 |
+
"Other": 0.0558
|
| 73 |
+
},
|
| 74 |
+
"lora": {
|
| 75 |
+
"comp_l1": 0.22320689222847964,
|
| 76 |
+
"coverage": 0.9526666666666667,
|
| 77 |
+
"logfc_r_mean_cp10k": 0.35634959703435354,
|
| 78 |
+
"deg_top50_sum": 1,
|
| 79 |
+
"partial_r_mean_cp10k": 0.2523250741286013
|
| 80 |
+
},
|
| 81 |
+
"broadcast": {
|
| 82 |
+
"logfc_r_mean_cp10k": 0.5012527613870964,
|
| 83 |
+
"logfc_r_mean_cp10k_covered_genes": NaN,
|
| 84 |
+
"deg_top50_sum": 0
|
| 85 |
+
},
|
| 86 |
+
"other_arms": {
|
| 87 |
+
"zs_raw": {
|
| 88 |
+
"comp_l1": 0.36837834377115714,
|
| 89 |
+
"logfc_r_mean_cp10k": 0.37377385748959724,
|
| 90 |
+
"deg_top50_sum": 0
|
| 91 |
+
},
|
| 92 |
+
"zs_pseudo": {
|
| 93 |
+
"comp_l1": 0.28517222575909135,
|
| 94 |
+
"logfc_r_mean_cp10k": 0.3422318017855569,
|
| 95 |
+
"deg_top50_sum": 1
|
| 96 |
+
},
|
| 97 |
+
"zs_cal": {
|
| 98 |
+
"comp_l1": 0.33804778238014854,
|
| 99 |
+
"logfc_r_mean_cp10k": 0.3291842953083055,
|
| 100 |
+
"deg_top50_sum": 0
|
| 101 |
+
}
|
| 102 |
+
},
|
| 103 |
+
"gates": {
|
| 104 |
+
"observed_composition_equal": true,
|
| 105 |
+
"broadcast_r_equal": true,
|
| 106 |
+
"broadcast_deg_equal": true
|
| 107 |
+
},
|
| 108 |
+
"method": "cibersortx",
|
| 109 |
+
"has_cell_type_expression": true,
|
| 110 |
+
"n_case": 6,
|
| 111 |
+
"n_control": 4,
|
| 112 |
+
"deg_per_type": {
|
| 113 |
+
"zero_filled": {
|
| 114 |
+
"bp": {
|
| 115 |
+
"T cell": 0,
|
| 116 |
+
"B cell": 0,
|
| 117 |
+
"Monocyte": 0,
|
| 118 |
+
"NK cell": 0,
|
| 119 |
+
"DC": 0
|
| 120 |
+
},
|
| 121 |
+
"broadcast": {
|
| 122 |
+
"T cell": 0,
|
| 123 |
+
"B cell": 0,
|
| 124 |
+
"Monocyte": 0,
|
| 125 |
+
"NK cell": 0,
|
| 126 |
+
"DC": 0
|
| 127 |
+
}
|
| 128 |
+
},
|
| 129 |
+
"covered": {
|
| 130 |
+
"bp": {
|
| 131 |
+
"T cell": null,
|
| 132 |
+
"B cell": null,
|
| 133 |
+
"Monocyte": null,
|
| 134 |
+
"NK cell": null,
|
| 135 |
+
"DC": null
|
| 136 |
+
},
|
| 137 |
+
"broadcast": {
|
| 138 |
+
"T cell": null,
|
| 139 |
+
"B cell": null,
|
| 140 |
+
"Monocyte": null,
|
| 141 |
+
"NK cell": null,
|
| 142 |
+
"DC": null
|
| 143 |
+
}
|
| 144 |
+
}
|
| 145 |
+
},
|
| 146 |
+
"hires_imputed_genes": {
|
| 147 |
+
"fewshot1|T cell": 0,
|
| 148 |
+
"fewshot1|B cell": 0,
|
| 149 |
+
"fewshot1|Monocyte": 0,
|
| 150 |
+
"fewshot1|NK cell": 0,
|
| 151 |
+
"fewshot1|DC": 0,
|
| 152 |
+
"fewshot1|Other": 0
|
| 153 |
+
},
|
| 154 |
+
"tool_sha256": "b541f68dc286497e8347d487af58ff3550a383d126eeabe347c0726e4fb28799",
|
| 155 |
+
"score_ft_sha256": "ec5f40b4cea6d5062d0138f3b934abb6465e34cbfeac869c8a0906924c033aec",
|
| 156 |
+
"seconds": 1.2
|
| 157 |
+
}
|