Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/healthy/sle_disjoint_truth_control.csv

@@ -0,0 +1,11 @@
+method,axis,T cell,B cell,Monocyte,NK cell,DC,Other,mean_over_types,sd_of_mean_over_splits
+ceiling_halfA,1006,0.9247084263736448,0.694303490153745,0.7669150880708799,0.6806720501815684,0.6257941417838438,0.3580073595948055,0.675066759359748,0.0050644650436846
+broadcast_disjoint,1006,0.7870498352482388,0.643495294187295,0.6004261434748315,0.5853060405575121,0.5850718279067483,0.357617608426387,0.5931611249668355,0.0041206712105804
+broadcast_full,1006,0.8002627436576976,0.6565523597607414,0.6150986596334688,0.5936139934230875,0.5934070121157953,0.3706091415493232,0.6049239850233524,0.0053270376218546
+diffusion_5seed_mean,1006,0.587595369462987,0.4090506516847655,0.4202878968081549,0.3434535699696265,0.2707881495060845,0.072696349626319,0.3506453311763229,
+scSemiProfiler,1006,0.4645000580402104,0.3117712763310763,0.2628713556711682,0.2302051848053519,0.259618771295669,0.3003679370420825,0.304889097197593,0.0046035539803665
+ceiling_halfA,2279,0.933943936626066,0.6688573815324589,0.7606182951536543,0.6454468064185985,0.5695353914868434,0.2862369069968667,0.644106453035748,0.0049852574482113
+broadcast_disjoint,2279,0.7773240471510383,0.6252921205375295,0.5963395824020391,0.5510333669209025,0.5433565656422912,0.2665507366450229,0.5599827365498039,0.0045922580615235
+broadcast_full,2279,0.7920078916270111,0.6373964274082867,0.6099838892939113,0.5614987294699733,0.5525479933301343,0.2774722266094551,0.5718178596231286,0.0037339641758269
+diffusion_5seed_mean,2279,0.5823708910464249,0.3392914475928396,0.3707861526875181,0.3095091701706704,0.2154459767146311,0.0430277386599951,0.3100718961453466,
+scSemiProfiler,2279,0.4200084949153659,0.2698971428084941,0.2419043341971318,0.1458978186250204,0.238581522350341,0.2184275501806452,0.2557861438461664,0.0036370858418431

paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/healthy/sle_disjoint_truth_control.provenance.json

@@ -0,0 +1,21 @@
+{
+  "key": "sle_disjoint_truth_control",
+  "source_records": [
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/RESULTS.md",
+      "sha256": "ae1711181961ede39dff846617d7433e2af2d3341a38a9a5d6251c03d8c358b2",
+      "role": "split-half protocol and caveats"
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/sle_broadcast/tables/splithalf_summary.csv",
+      "sha256": "f21e93e67a4cbf902d4c5d723e709d62f27ac8c4f838f5676a06b9d81d41a87d",
+      "role": "saved analysis input"
+    }
+  ],
+  "new_training": false,
+  "new_inference": false,
+  "new_embedding": false,
+  "new_statistical_scoring": false,
+  "display_transform_notes": "Existing five random half-A/half-B splits of the same 42 held-out SLE donors. Bulk A is formed from cells disjoint from per-type half-B truth. The full-bulk control includes B. The observed type-specific half-A predictor is a split-half reference. Bars and SDs are saved summary values; no split, expression analysis, or hypothesis test is rerun. PBISC values summarize its five existing sampling seeds.",
+  "palette": "native"
+}

paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/healthy/stored_matched_trajectories.csv

@@ -0,0 +1,289 @@
+arm,pair_id,pseudo_label,input_label,x_input,y_input,x_pseudo,y_pseudo
+raw,3,Monocyte,Monocyte,1.43,8.384,1.369,7.762
+raw,5,T cell,T cell,13.277,6.316,11.407,6.643
+raw,6,NK cell,NK cell,7.559,18.201,7.438,17.731
+raw,7,T cell,T cell,12.58,4.915,10.331,4.276
+raw,11,T cell,NK cell,5.441,18.375,7.319,18.066
+raw,14,T cell,T cell,11.755,8.816,10.326,8.769
+raw,16,NK cell,NK cell,8.17,17.19,7.741,17.537
+raw,19,T cell,T cell,9.582,13.536,11.184,5.392
+raw,22,T cell,DC,7.828,-2.908,10.385,9.183
+raw,30,DC,Monocyte,0.639,5.607,7.027,-3.546
+raw,40,Monocyte,Monocyte,1.102,8.407,1.167,8.391
+raw,44,T cell,Monocyte,1.394,8.463,11.242,10.46
+raw,45,T cell,B cell,6.983,-4.378,8.701,11.927
+raw,47,NK cell,NK cell,7.048,15.717,6.482,15.432
+raw,48,T cell,B cell,8.256,-3.871,10.039,9.089
+raw,53,Monocyte,Monocyte,-1.391,10.524,0.945,7.662
+raw,54,T cell,B cell,7.752,-4.404,10.483,9.84
+raw,55,Monocyte,Monocyte,0.949,6.82,1.248,7.495
+raw,70,T cell,Monocyte,1.171,6.521,8.386,11.985
+raw,71,T cell,T cell,13.183,4.746,12.102,5.4
+raw,122,NK cell,NK cell,6.755,15.375,6.443,15.897
+raw,142,B cell,B cell,8.193,-4.059,6.938,-3.846
+raw,165,NK cell,NK cell,6.72,18.189,7.294,17.82
+raw,173,B cell,B cell,6.522,-3.647,6.552,-4.049
+raw,238,Other,Other,13.905,4.275,9.213,8.691
+raw,290,Monocyte,Monocyte,0.556,7.709,0.728,7.935
+raw,291,NK cell,NK cell,6.39,18.452,7.399,17.922
+raw,329,B cell,B cell,7.094,-3.983,6.813,-3.664
+raw,342,B cell,B cell,7.458,-4.505,6.494,-4.279
+raw,345,Monocyte,Monocyte,1.08,8.583,1.467,8.593
+raw,353,Monocyte,Monocyte,1.271,8.48,6.907,7.827
+raw,377,DC,Monocyte,0.137,5.693,1.524,6.196
+raw,389,B cell,B cell,7.339,-4.378,7.031,-3.861
+raw,393,B cell,Monocyte,-0.836,9.947,6.973,-3.695
+raw,394,Monocyte,Monocyte,-0.061,6.183,1.104,7.219
+raw,411,Monocyte,Monocyte,1.192,8.575,1.525,8.193
+raw,412,Monocyte,Monocyte,-0.169,5.86,1.269,6.78
+raw,423,Monocyte,Monocyte,-0.537,6.982,0.507,7.949
+raw,434,NK cell,NK cell,6.45,18.503,7.224,18.082
+raw,453,Monocyte,Monocyte,1.144,6.367,1.383,7.474
+raw,473,NK cell,Monocyte,-1.583,10.491,6.601,16.144
+raw,555,NK cell,NK cell,6.126,18.337,6.801,17.743
+raw,557,B cell,B cell,6.824,-4.102,7.492,-3.948
+raw,617,NK cell,Monocyte,-0.048,5.943,7.252,18.125
+raw,624,B cell,B cell,6.958,-4.203,6.457,-3.63
+raw,643,B cell,B cell,7.559,-3.8,6.648,-3.674
+raw,647,NK cell,Monocyte,0.821,7.724,6.563,16.038
+raw,657,DC,DC,-7.524,7.723,-7.363,7.559
+raw,767,NK cell,NK cell,8.415,17.794,7.443,17.496
+raw,1146,B cell,B cell,7.516,-4.519,6.629,-3.801
+raw,1153,Other,Monocyte,0.704,5.981,1.98,5.073
+raw,1229,DC,DC,2.37,3.789,2.413,3.687
+raw,1239,B cell,B cell,6.522,-4.199,7.038,-4.092
+raw,1246,B cell,B cell,7.241,-3.637,7.12,-3.892
+raw,1586,Other,Monocyte,1.435,8.593,13.536,4.333
+raw,1644,DC,Monocyte,0.277,5.964,1.537,6.228
+raw,2229,DC,DC,1.975,4.497,2.039,4.799
+raw,2494,Other,T cell,13.803,5.686,10.425,7.645
+raw,2592,DC,DC,2.009,4.236,2.039,4.35
+raw,2846,DC,Monocyte,0.393,6.158,10.807,10.831
+raw,3073,DC,Monocyte,-0.068,5.762,2.195,4.264
+raw,3100,Other,Monocyte,-0.94,6.175,10.948,7.16
+raw,3106,DC,Monocyte,1.333,8.45,1.415,8.22
+raw,3213,Other,Monocyte,0.951,6.502,11.032,6.393
+raw,3227,Other,Monocyte,1.351,8.501,13.809,4.292
+raw,3297,DC,Monocyte,0.365,5.401,1.09,6.85
+raw,3308,Other,Monocyte,1.217,8.532,1.343,8.535
+raw,3311,DC,DC,1.937,4.314,2.199,4.382
+raw,3466,Other,Other,13.832,4.275,13.557,4.328
+raw,4076,Other,T cell,13.602,5.849,11.847,7.746
+raw,4231,Other,Other,13.84,4.233,13.78,4.262
+raw,4427,Other,Monocyte,-0.92,6.644,1.497,8.603
+tpm,3,Monocyte,Monocyte,1.404,7.097,1.369,7.762
+tpm,5,T cell,T cell,9.581,11.644,11.407,6.643
+tpm,6,NK cell,T cell,7.51,18.1,7.438,17.731
+tpm,7,T cell,T cell,10.404,5.112,10.331,4.276
+tpm,11,T cell,NK cell,6.14,18.267,7.319,18.066
+tpm,14,T cell,T cell,11.104,8.691,10.326,8.769
+tpm,16,NK cell,T cell,7.556,17.152,7.741,17.537
+tpm,19,T cell,T cell,9.349,8.541,11.184,5.392
+tpm,22,T cell,DC,5.553,-0.407,10.385,9.183
+tpm,30,DC,Monocyte,1.384,6.439,7.027,-3.546
+tpm,40,Monocyte,Monocyte,1.08,8.416,1.167,8.391
+tpm,44,T cell,Monocyte,0.806,8.322,11.242,10.46
+tpm,45,T cell,Monocyte,1.471,7.989,8.701,11.927
+tpm,47,NK cell,NK cell,6.31,15.641,6.482,15.432
+tpm,48,T cell,B cell,8.159,-3.514,10.039,9.089
+tpm,53,Monocyte,Monocyte,1.348,6.706,0.945,7.662
+tpm,54,T cell,Monocyte,1.279,8.064,10.483,9.84
+tpm,55,Monocyte,Monocyte,0.95,6.695,1.248,7.495
+tpm,70,T cell,Monocyte,1.442,6.605,8.386,11.985
+tpm,71,T cell,T cell,13.096,4.992,12.102,5.4
+tpm,122,NK cell,NK cell,6.36,16.225,6.443,15.897
+tpm,142,B cell,B cell,7.806,-4.289,6.938,-3.846
+tpm,165,NK cell,NK cell,7.228,17.753,7.294,17.82
+tpm,173,B cell,Monocyte,1.51,7.631,6.552,-4.049
+tpm,238,Other,Other,14.571,5.906,9.213,8.691
+tpm,290,Monocyte,Monocyte,1.222,7.33,0.728,7.935
+tpm,291,NK cell,NK cell,7.415,17.909,7.399,17.922
+tpm,329,B cell,B cell,6.947,-4.14,6.813,-3.664
+tpm,342,B cell,B cell,7.725,-4.205,6.494,-4.279
+tpm,345,Monocyte,Monocyte,1.416,8.515,1.467,8.593
+tpm,353,Monocyte,Monocyte,1.325,8.448,6.907,7.827
+tpm,377,DC,Monocyte,1.116,6.042,1.524,6.196
+tpm,389,B cell,B cell,7.047,-3.697,7.031,-3.861
+tpm,393,B cell,Monocyte,0.618,6.05,6.973,-3.695
+tpm,394,Monocyte,Monocyte,0.663,6.25,1.104,7.219
+tpm,411,Monocyte,Monocyte,1.418,7.94,1.525,8.193
+tpm,412,Monocyte,Monocyte,0.223,5.931,1.269,6.78
+tpm,423,Monocyte,Monocyte,0.477,7.038,0.507,7.949
+tpm,434,NK cell,Monocyte,1.224,6.758,7.224,18.082
+tpm,453,Monocyte,Monocyte,0.956,5.758,1.383,7.474
+tpm,473,NK cell,Monocyte,-1.297,10.781,6.601,16.144
+tpm,555,NK cell,NK cell,6.602,17.882,6.801,17.743
+tpm,557,B cell,B cell,7.165,-4.016,7.492,-3.948
+tpm,617,NK cell,Monocyte,0.992,6.146,7.252,18.125
+tpm,624,B cell,Monocyte,1.705,6.623,6.457,-3.63
+tpm,643,B cell,Monocyte,1.457,7.184,6.648,-3.674
+tpm,647,NK cell,NK cell,6.444,16.19,6.563,16.038
+tpm,657,DC,DC,-7.332,7.483,-7.363,7.559
+tpm,767,NK cell,NK cell,8.01,17.607,7.443,17.496
+tpm,1146,B cell,B cell,7.18,-4.323,6.629,-3.801
+tpm,1153,Other,Monocyte,1.721,6.348,1.98,5.073
+tpm,1229,DC,DC,2.239,4.222,2.413,3.687
+tpm,1239,B cell,B cell,6.608,-3.899,7.038,-4.092
+tpm,1246,B cell,Monocyte,1.524,6.007,7.12,-3.892
+tpm,1586,Other,Other,13.815,4.296,13.536,4.333
+tpm,1644,DC,Monocyte,1.25,5.831,1.537,6.228
+tpm,2229,DC,DC,1.395,5.409,2.039,4.799
+tpm,2494,Other,Other,10.458,10.113,10.425,7.645
+tpm,2592,DC,DC,1.929,4.56,2.039,4.35
+tpm,2846,DC,Monocyte,1.113,7.124,10.807,10.831
+tpm,3073,DC,Monocyte,0.01,6.232,2.195,4.264
+tpm,3100,Other,Monocyte,-1.329,7.544,10.948,7.16
+tpm,3106,DC,Monocyte,1.177,7.628,1.415,8.22
+tpm,3213,Other,Monocyte,1.225,7.113,11.032,6.393
+tpm,3227,Other,Other,13.861,4.276,13.809,4.292
+tpm,3297,DC,Monocyte,0.603,5.34,1.09,6.85
+tpm,3308,Other,Other,7.548,8.817,1.343,8.535
+tpm,3311,DC,DC,1.45,5.455,2.199,4.382
+tpm,3466,Other,Other,13.906,4.231,13.557,4.328
+tpm,4076,Other,Monocyte,1.643,6.67,11.847,7.746
+tpm,4231,Other,Other,13.85,4.268,13.78,4.262
+tpm,4427,Other,Monocyte,1.359,8.338,1.497,8.603
+refcal,3,Monocyte,Monocyte,1.609,7.305,1.369,7.762
+refcal,5,T cell,T cell,12.215,3.876,11.407,6.643
+refcal,6,NK cell,NK cell,7.776,18.094,7.438,17.731
+refcal,7,T cell,T cell,11.736,3.587,10.331,4.276
+refcal,11,T cell,NK cell,7.891,18.039,7.319,18.066
+refcal,14,T cell,T cell,12.696,3.985,10.326,8.769
+refcal,16,NK cell,NK cell,7.914,18.103,7.741,17.537
+refcal,19,T cell,T cell,11.478,3.704,11.184,5.392
+refcal,22,T cell,T cell,12.275,3.908,10.385,9.183
+refcal,30,DC,Monocyte,1.658,6.5,7.027,-3.546
+refcal,40,Monocyte,Monocyte,1.416,7.879,1.167,8.391
+refcal,44,T cell,T cell,9.999,8.488,11.242,10.46
+refcal,45,T cell,T cell,12.297,3.767,8.701,11.927
+refcal,47,NK cell,NK cell,11.356,4.246,6.482,15.432
+refcal,48,T cell,T cell,12.513,4.491,10.039,9.089
+refcal,53,Monocyte,Monocyte,-1.033,10.804,0.945,7.662
+refcal,54,T cell,DC,5.435,-0.439,10.483,9.84
+refcal,55,Monocyte,Monocyte,1.629,7.083,1.248,7.495
+refcal,70,T cell,T cell,8.78,11.588,8.386,11.985
+refcal,71,T cell,T cell,12.287,3.601,12.102,5.4
+refcal,122,NK cell,NK cell,6.734,15.592,6.443,15.897
+refcal,142,B cell,B cell,6.517,-3.863,6.938,-3.846
+refcal,165,NK cell,NK cell,7.924,17.868,7.294,17.82
+refcal,173,B cell,B cell,12.049,3.929,6.552,-4.049
+refcal,238,Other,Other,13.871,4.244,9.213,8.691
+refcal,290,Monocyte,Monocyte,1.444,7.563,0.728,7.935
+refcal,291,NK cell,NK cell,7.737,17.824,7.399,17.922
+refcal,329,B cell,B cell,6.342,-4.171,6.813,-3.664
+refcal,342,B cell,B cell,6.52,-4.062,6.494,-4.279
+refcal,345,Monocyte,T cell,12.104,3.556,1.467,8.593
+refcal,353,Monocyte,Other,13.876,4.167,6.907,7.827
+refcal,377,DC,DC,2.042,4.838,1.524,6.196
+refcal,389,B cell,B cell,6.453,-4.112,7.031,-3.861
+refcal,393,B cell,Monocyte,-0.888,10.85,6.973,-3.695
+refcal,394,Monocyte,Monocyte,1.646,6.906,1.104,7.219
+refcal,411,Monocyte,Monocyte,1.584,7.868,1.525,8.193
+refcal,412,Monocyte,Monocyte,1.515,6.556,1.269,6.78
+refcal,423,Monocyte,Monocyte,1.588,7.03,0.507,7.949
+refcal,434,NK cell,NK cell,7.72,18.119,7.224,18.082
+refcal,453,Monocyte,Monocyte,1.527,7.06,1.383,7.474
+refcal,473,NK cell,NK cell,8.029,17.753,6.601,16.144
+refcal,555,NK cell,NK cell,7.715,18.221,6.801,17.743
+refcal,557,B cell,B cell,6.504,-4.271,7.492,-3.948
+refcal,617,NK cell,Monocyte,1.49,6.59,7.252,18.125
+refcal,624,B cell,B cell,6.345,-4.032,6.457,-3.63
+refcal,643,B cell,B cell,6.52,-3.852,6.648,-3.674
+refcal,647,NK cell,NK cell,6.532,15.898,6.563,16.038
+refcal,657,DC,DC,5.254,-0.867,-7.363,7.559
+refcal,767,NK cell,T cell,6.393,-3.768,7.443,17.496
+refcal,1146,B cell,B cell,12.128,3.603,6.629,-3.801
+refcal,1153,Other,Monocyte,1.589,6.612,1.98,5.073
+refcal,1229,DC,DC,5.256,-0.494,2.413,3.687
+refcal,1239,B cell,B cell,12.121,3.849,7.038,-4.092
+refcal,1246,B cell,B cell,6.561,-3.43,7.12,-3.892
+refcal,1586,Other,T cell,12.165,3.605,13.536,4.333
+refcal,1644,DC,DC,1.712,6.398,1.537,6.228
+refcal,2229,DC,DC,1.776,5.245,2.039,4.799
+refcal,2494,Other,T cell,12.311,3.843,10.425,7.645
+refcal,2592,DC,DC,2.167,4.452,2.039,4.35
+refcal,2846,DC,Monocyte,1.536,6.896,10.807,10.831
+refcal,3073,DC,DC,-7.39,7.585,2.195,4.264
+refcal,3100,Other,Monocyte,2.225,6.478,10.948,7.16
+refcal,3106,DC,Monocyte,1.411,7.881,1.415,8.22
+refcal,3213,Other,Monocyte,1.517,7.362,11.032,6.393
+refcal,3227,Other,B cell,13.844,4.202,13.809,4.292
+refcal,3297,DC,DC,5.435,-0.477,1.09,6.85
+refcal,3308,Other,Other,9.298,9.017,1.343,8.535
+refcal,3311,DC,DC,2.17,4.555,2.199,4.382
+refcal,3466,Other,T cell,6.342,-3.59,13.557,4.328
+refcal,4076,Other,T cell,12.041,3.326,11.847,7.746
+refcal,4231,Other,Other,13.812,4.257,13.78,4.262
+refcal,4427,Other,Monocyte,1.538,8.499,1.497,8.603
+cal,3,Monocyte,Monocyte,1.392,7.701,1.369,7.762
+cal,5,T cell,T cell,11.404,7.071,11.407,6.643
+cal,6,NK cell,T cell,7.968,17.785,7.438,17.731
+cal,7,T cell,T cell,10.116,4.883,10.331,4.276
+cal,11,T cell,T cell,12.016,9.116,7.319,18.066
+cal,14,T cell,T cell,10.484,8.395,10.326,8.769
+cal,16,NK cell,T cell,7.851,16.722,7.741,17.537
+cal,19,T cell,T cell,10.633,5.839,11.184,5.392
+cal,22,T cell,T cell,10.675,8.891,10.385,9.183
+cal,30,DC,B cell,7.235,-4.126,7.027,-3.546
+cal,40,Monocyte,Monocyte,1.716,7.977,1.167,8.391
+cal,44,T cell,T cell,10.622,10.158,11.242,10.46
+cal,45,T cell,T cell,8.724,12.012,8.701,11.927
+cal,47,NK cell,T cell,8.42,11.94,6.482,15.432
+cal,48,T cell,T cell,9.996,10.377,10.039,9.089
+cal,53,Monocyte,Monocyte,-0.439,9.507,0.945,7.662
+cal,54,T cell,B cell,6.673,-3.662,10.483,9.84
+cal,55,Monocyte,Monocyte,1.597,7.465,1.248,7.495
+cal,70,T cell,T cell,8.449,12.349,8.386,11.985
+cal,71,T cell,T cell,12.687,5.371,12.102,5.4
+cal,122,NK cell,NK cell,6.754,15.516,6.443,15.897
+cal,142,B cell,B cell,7.724,-4.158,6.938,-3.846
+cal,165,NK cell,T cell,8.87,14.384,7.294,17.82
+cal,173,B cell,B cell,6.431,-4.063,6.552,-4.049
+cal,238,Other,Other,13.819,4.298,9.213,8.691
+cal,290,Monocyte,Monocyte,0.686,7.753,0.728,7.935
+cal,291,NK cell,NK cell,7.562,17.955,7.399,17.922
+cal,329,B cell,B cell,7.392,-4.054,6.813,-3.664
+cal,342,B cell,B cell,6.76,-4.074,6.494,-4.279
+cal,345,Monocyte,Other,1.327,8.389,1.467,8.593
+cal,353,Monocyte,Other,7.579,7.414,6.907,7.827
+cal,377,DC,Monocyte,1.559,5.747,1.524,6.196
+cal,389,B cell,B cell,7.058,-3.76,7.031,-3.861
+cal,393,B cell,Monocyte,1.178,6.127,6.973,-3.695
+cal,394,Monocyte,Monocyte,0.979,7.047,1.104,7.219
+cal,411,Monocyte,Monocyte,1.544,8.307,1.525,8.193
+cal,412,Monocyte,Monocyte,0.87,6.847,1.269,6.78
+cal,423,Monocyte,Monocyte,0.237,7.479,0.507,7.949
+cal,434,NK cell,NK cell,7.19,18.196,7.224,18.082
+cal,453,Monocyte,Monocyte,1.494,7.441,1.383,7.474
+cal,473,NK cell,NK cell,6.793,16.2,6.601,16.144
+cal,555,NK cell,NK cell,7.448,17.801,6.801,17.743
+cal,557,B cell,B cell,7.734,-3.668,7.492,-3.948
+cal,617,NK cell,Monocyte,1.589,6.177,7.252,18.125
+cal,624,B cell,B cell,6.606,-3.915,6.457,-3.63
+cal,643,B cell,B cell,6.89,-3.785,6.648,-3.674
+cal,647,NK cell,NK cell,6.375,16.767,6.563,16.038
+cal,657,DC,DC,-7.299,7.494,-7.363,7.559
+cal,767,NK cell,NK cell,7.498,17.323,7.443,17.496
+cal,1146,B cell,B cell,6.361,-3.642,6.629,-3.801
+cal,1153,Other,DC,2.232,4.461,1.98,5.073
+cal,1229,DC,DC,5.314,-0.234,2.413,3.687
+cal,1239,B cell,B cell,7.048,-3.992,7.038,-4.092
+cal,1246,B cell,B cell,6.902,-3.505,7.12,-3.892
+cal,1586,Other,T cell,13.717,4.322,13.536,4.333
+cal,1644,DC,DC,1.523,6.32,1.537,6.228
+cal,2229,DC,DC,2.044,4.726,2.039,4.799
+cal,2494,Other,T cell,10.442,6.538,10.425,7.645
+cal,2592,DC,DC,2.213,4.414,2.039,4.35
+cal,2846,DC,Monocyte,1.978,6.58,10.807,10.831
+cal,3073,DC,DC,1.725,4.785,2.195,4.264
+cal,3100,Other,Other,2.477,6.759,10.948,7.16
+cal,3106,DC,Monocyte,1.379,8.044,1.415,8.22
+cal,3213,Other,Monocyte,1.286,7.692,11.032,6.393
+cal,3227,Other,Other,13.937,4.168,13.809,4.292
+cal,3297,DC,Monocyte,0.937,6.759,1.09,6.85
+cal,3308,Other,Other,13.722,4.324,1.343,8.535
+cal,3311,DC,DC,2.192,4.514,2.199,4.382
+cal,3466,Other,Monocyte,1.341,8.514,13.557,4.328
+cal,4076,Other,T cell,13.088,6.259,11.847,7.746
+cal,4231,Other,Other,13.899,4.269,13.78,4.262
+cal,4427,Other,Other,1.505,8.547,1.497,8.603

paper-releases/pbisc-diffusion/updates/20261013T034842Z-expanded-131-slide-master/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/expanded_master_20261013/healthy/stored_matched_trajectories.provenance.json

@@ -0,0 +1,26 @@
+{
+  "key": "stored_matched_trajectories",
+  "source_records": [
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/MANIFEST.json",
+      "sha256": "45e6836942e894e51cfba5e4f9925a0d8affa9bbe95f1adebaf87af2830adf1b",
+      "role": "historical input/control provenance"
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/RESULTS.md",
+      "sha256": "83ec5eec39f15ccb7615da81c4b8f6345563b3a224934f3f942d29bf87b9054c",
+      "role": "historical scope and limitations"
+    },
+    {
+      "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/utility_studies_final6k_20260925/umap/cell_immicro_5arm/interactive/cells_5arm.json",
+      "sha256": "e0a1094d29213b93e05de8c60b3ea1e0581ab0e09599bb6b7506491744019e99",
+      "role": "previously computed display coordinates; no embedding recalculated"
+    }
+  ],
+  "new_training": false,
+  "new_inference": false,
+  "new_embedding": false,
+  "new_statistical_scoring": false,
+  "display_transform_notes": "Display subset: first 12 stored pair IDs within each pseudobulk-predicted type, at most 72 pairs/arm, selected deterministically from the previously stored display sample. No embedding or labels recalculated. Lines connect generated samples sharing noise; they are not longitudinal biological transitions. Exact displayed pairs are saved. Shared display bounds cover all saved coordinates plus 2.5% padding.",
+  "palette": "preserved"
+}