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+ "bytes": 20558,
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+ "sha256": "5d8dc9b7d1fe27804c804b4b71e7befdea36be10865dfe4e2f5b2f656511e63c"
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+ }
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+ },
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+ {
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+ "cohort": "ye2026_sepsis",
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+ "labels": {
31
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ye2026_sepsis/observed_labels/labels/labels.parquet",
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+ "bytes": 11897699,
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+ "sha256": "ab27c027a75b7cd47ec8267d4b33bfe41e8cb6ab64190a3592db1cffa2a73ea7"
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+ "labels_manifest": {
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+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/ye2026_sepsis/observed_labels/labels/labels.manifest.json",
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+ "bytes": 4900,
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+ "sha256": "46956a2d2502167c1ae2305c60c06d62b4de0ecdf2b31e903580b431004e9a48"
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+ },
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+ "same_scored_donors": {
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+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/ye2026_sepsis/fewshot_n5/draw0/summary.json",
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+ "bytes": 46615,
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+ "sha256": "f15e3dfd767d764b893882c90f158264e5afb0b59171cf2325e77ab279c0c820"
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+ }
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+ },
46
+ {
47
+ "cohort": "imperial_eskd",
48
+ "labels": {
49
+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/imperial_eskd/observed_labels/labels/labels.parquet",
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+ "bytes": 9870356,
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+ "sha256": "b7451fb96819132a1b72d739ebe95a78674a764769ee80746975adaed55cf67f"
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+ },
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+ "labels_manifest": {
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+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scoring_cache/imperial_eskd/observed_labels/labels/labels.manifest.json",
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+ "bytes": 4891,
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+ "sha256": "8ce9497a1e1bca28dd453352f2353a63d4534137faafa9ebd3403c16eed70b83"
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+ },
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+ "same_scored_donors": {
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+ "path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/imperial_eskd/fewshot_n5/draw0/summary.json",
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+ "bytes": 50352,
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+ "sha256": "1bb9df03f1a5018d92b1e4e101ce36e5542a61cf29c0d61bc0c7a03be90a6c94"
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+ }
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+ }
64
+ ]
paper-releases/pbisc-diffusion/updates/20261015T141849Z-rare-cell-7k-8k-panels/diffusion/dataset/server_1/model8/plans/rare_gene_context_expansion_20261015/ilc_marker_audit.csv ADDED
@@ -0,0 +1,45 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ requested_symbol,resolution,raw_available,panel_position,canonical_tensor_position,gene_id,gene_symbol,universal_rank,eligible_rank,eligible,eligibility_reason,is_priority_marker,mean_log1p,variance_log1p,log_dispersion,normalized_dispersion,measured_cells,detected_cells,in_tier_2k,in_tier_6k,in_tier_p15k,in_tier_broad,in_frozen_1005_annotator,in_final2k,in_final6k,in_floor01_15114,in_legacy2k_32768sample,in_legacy3k_32768sample,in_legacy6k_v3
2
+ IL7R,exact_symbol,True,5266.0,5266.0,ENSG00000168685,IL7R,1358.0,1358.0,True,eligible,False,1.2346299,1.9193392,0.93789047,1.2529655,1048576.0,512521.0,True,True,True,True,True,True,True,True,True,True,True
3
+ KLRB1,exact_symbol,True,11693.0,11693.0,ENSG00000111796,KLRB1,217.0,217.0,True,eligible,False,0.29041746,0.6107335,1.1323534,3.620429,1048576.0,143673.0,True,True,True,True,True,True,True,True,True,True,True
4
+ RORA,exact_symbol,True,13841.0,13841.0,ENSG00000069667,RORA,1551.0,1551.0,True,eligible,False,0.8089394,1.2253586,0.9221821,1.1316547,1048576.0,416233.0,True,True,True,True,True,True,True,True,True,True,True
5
+ RORC,exact_symbol,True,1202.0,1202.0,ENSG00000143365,RORC,5594.0,5594.0,True,eligible,False,0.011383401,0.016757201,0.9050572,0.062345263,1048576.0,8941.0,False,True,True,True,False,False,True,True,False,False,False
6
+ GATA3,exact_symbol,True,9557.0,9557.0,ENSG00000107485,GATA3,2995.0,2995.0,True,eligible,False,0.22711097,0.32783112,0.89342505,0.5627242,1048576.0,158914.0,False,True,True,True,False,False,True,True,True,True,True
7
+ PTGDR2,exact_symbol,True,10842.0,10842.0,ENSG00000183134,PTGDR2,14797.0,14797.0,True,eligible,False,0.003701172,0.004702448,0.82001305,-1.3594937,1048576.0,3562.0,False,False,True,True,False,False,False,True,False,False,False
8
+ IL1RL1,exact_symbol,True,2615.0,2615.0,ENSG00000115602,IL1RL1,578.0,578.0,True,eligible,False,0.0023072069,0.004076819,1.0177612,2.1301692,1048576.0,1599.0,True,True,True,True,False,True,True,True,False,False,False
9
+ IL17RB,exact_symbol,True,3739.0,3739.0,ENSG00000056736,IL17RB,762.0,762.0,True,eligible,False,0.0020544357,0.0033890426,0.97441703,1.8073398,1048576.0,1523.0,True,True,True,True,False,True,True,True,False,False,False
10
+ CRLF2,exact_symbol_multiple_loci,True,19160.0,19160.0,ENSG00000205755,CRLF2,12968.0,12968.0,True,eligible,False,0.0024140743,0.0032233873,0.848118,-0.8349094,712576.0,1451.0,False,False,True,True,False,False,False,True,False,False,False
11
+ CRLF2,exact_symbol_multiple_loci,True,20027.0,20027.0,ENSG00000292363,CRLF2,491.0,491.0,True,eligible,False,0.02557181,0.049243372,1.0735302,2.3632684,336000.0,5248.0,True,True,True,True,False,True,True,True,False,False,False
12
+ KIT,exact_symbol,True,4647.0,4647.0,ENSG00000157404,KIT,1932.0,1932.0,True,eligible,False,0.014812118,0.024304131,0.9710923,0.9317471,1048576.0,10725.0,True,True,True,True,False,True,True,True,False,False,False
13
+ IL23R,exact_symbol,True,782.0,782.0,ENSG00000162594,IL23R,3202.0,3202.0,True,eligible,False,0.0071930536,0.011196664,0.9386759,0.50884753,1048576.0,5479.0,False,True,True,True,False,False,True,True,False,False,False
14
+ IL1R1,exact_symbol,True,2613.0,2613.0,ENSG00000115594,IL1R1,2157.0,2157.0,True,eligible,False,0.02021348,0.032243934,0.95365196,0.83169836,1048576.0,16063.0,False,True,True,True,False,False,True,True,True,True,True
15
+ NCR2,exact_symbol,True,6526.0,6526.0,ENSG00000096264,NCR2,16658.0,,False,below_min_detected_cells,False,0.0006246629,0.0008015968,0.82559854,,1001088.0,582.0,False,False,False,False,False,False,False,False,False,False,False
16
+ NCR1,exact_symbol,True,17794.0,17794.0,ENSG00000189430,NCR1,1057.0,1057.0,True,eligible,False,0.07747249,0.12981634,0.9841902,1.4861431,1048576.0,50788.0,True,True,True,True,True,True,True,True,True,True,True
17
+ KLRD1,exact_symbol,True,11709.0,11709.0,ENSG00000134539,KLRD1,255.0,255.0,True,eligible,False,0.3380759,0.69057333,1.1127313,3.376236,1048576.0,163373.0,True,True,True,True,True,True,True,True,True,True,True
18
+ TBX21,exact_symbol,True,15769.0,15769.0,ENSG00000073861,TBX21,738.0,738.0,True,eligible,False,0.1425887,0.23651251,0.97783893,1.8390203,1048576.0,92111.0,True,True,True,True,True,True,True,True,True,True,True
19
+ EOMES,exact_symbol,True,3440.0,3440.0,ENSG00000163508,EOMES,1768.0,1768.0,True,eligible,False,0.083643034,0.13225515,0.9482488,1.0100043,1048576.0,57970.0,True,True,True,True,True,True,True,True,True,True,True
20
+ ZBTB16,exact_symbol,True,11377.0,11377.0,ENSG00000109906,ZBTB16,450.0,450.0,True,eligible,False,0.14119428,0.25068715,1.0208225,2.4946542,1048576.0,87989.0,True,True,True,True,True,True,True,True,True,True,True
21
+ BCL11B,exact_symbol,True,13473.0,13473.0,ENSG00000127152,BCL11B,1201.0,1201.0,True,eligible,False,0.9218494,1.4693319,0.9531609,1.3708936,1048576.0,435083.0,True,True,True,True,True,True,True,True,True,True,True
22
+ TCF7,exact_symbol,True,5631.0,5631.0,ENSG00000081059,TCF7,1777.0,1777.0,True,eligible,False,0.868626,1.2797767,0.9055673,1.0033443,1048576.0,438193.0,True,True,True,True,True,True,True,True,True,True,True
23
+ ID2,exact_symbol,True,2088.0,2088.0,ENSG00000115738,ID2,1942.0,1942.0,True,eligible,False,0.41796154,0.6148315,0.9046327,0.9271668,1048576.0,264023.0,True,True,True,True,True,True,True,True,True,True,True
24
+ IL2RA,exact_symbol,True,9547.0,9547.0,ENSG00000134460,IL2RA,335.0,335.0,True,eligible,False,0.081722364,0.16172329,1.091566,2.9086194,1048576.0,49825.0,True,True,True,True,True,True,True,True,True,True,True
25
+ AHR,exact_symbol,True,7206.0,7206.0,ENSG00000106546,AHR,2188.0,2188.0,True,eligible,False,0.25547063,0.38147938,0.9135837,0.8224958,1048576.0,176474.0,False,True,True,True,False,False,True,True,True,True,True
26
+ IL22,exact_symbol,True,12213.0,12213.0,ENSG00000127318,IL22,18182.0,,False,below_min_detected_cells,False,0.00028769922,0.00053242,1.0475341,,1035008.0,195.0,False,False,False,False,False,False,False,False,False,False,False
27
+ IL5,exact_symbol,True,5613.0,5613.0,ENSG00000113525,IL5,16423.0,,False,below_min_detected_cells,False,0.000856069,0.0013188242,0.9323839,,1035008.0,672.0,False,False,False,False,False,False,False,False,False,False,False
28
+ IL13,exact_symbol,True,5615.0,5615.0,ENSG00000169194,IL13,16424.0,,False,below_min_detected_cells,False,0.00071943534,0.0012872401,1.0257679,,1035008.0,524.0,False,False,False,False,False,False,False,False,False,False,False
29
+ IL17A,exact_symbol,True,6637.0,6637.0,ENSG00000112115,IL17A,16695.0,,False,below_min_detected_cells,False,6.195639e-05,0.000110163615,1.0217612,,1001088.0,45.0,False,False,False,False,False,False,False,False,False,False,False
30
+ IL17F,exact_symbol,True,6638.0,6638.0,ENSG00000112116,IL17F,16696.0,,False,below_min_detected_cells,False,0.00015028892,0.00025401058,0.98959637,,988800.0,103.0,False,False,False,False,False,False,False,False,False,False,False
31
+ IL12RB1,exact_symbol,True,17004.0,17004.0,ENSG00000096996,IL12RB1,8477.0,8477.0,True,eligible,False,0.11973394,0.15821041,0.84214884,-0.30513358,1048576.0,97664.0,False,False,True,True,False,False,False,True,False,False,False
32
+ IL12RB2,exact_symbol,True,783.0,783.0,ENSG00000081985,IL12RB2,183.0,183.0,True,eligible,False,0.08330768,0.18466638,1.1683494,3.9258173,1048576.0,44336.0,True,True,True,True,True,True,True,True,True,True,True
33
+ IL18R1,exact_symbol,True,2616.0,2616.0,ENSG00000115604,IL18R1,1399.0,1399.0,True,eligible,False,0.10902464,0.17068657,0.9421838,1.220211,1048576.0,76434.0,True,True,True,True,True,True,True,True,True,True,True
34
+ IL18RAP,exact_symbol,True,2617.0,2617.0,ENSG00000115607,IL18RAP,468.0,468.0,True,eligible,False,0.101162374,0.1808783,1.0253243,2.432138,1048576.0,62572.0,True,True,True,True,True,True,True,True,True,True,True
35
+ CCR6,exact_symbol,True,7083.0,7083.0,ENSG00000112486,CCR6,2441.0,2441.0,True,eligible,False,0.07377782,0.112645194,0.92696023,0.72798127,1048576.0,53903.0,False,True,True,True,False,False,True,True,True,True,True
36
+ CXCR6,exact_symbol,True,3561.0,3561.0,ENSG00000172215,CXCR6,3863.0,3863.0,True,eligible,False,0.017223708,0.02606357,0.92157197,0.35720903,1048576.0,13016.0,False,True,True,True,False,False,True,True,True,True,True
37
+ ICOS,exact_symbol,True,3038.0,3038.0,ENSG00000163600,ICOS,1336.0,1336.0,True,eligible,False,0.17946531,0.28025424,0.9406347,1.2706748,1048576.0,120463.0,True,True,True,True,True,True,True,True,True,True,True
38
+ CD3D,exact_symbol,True,11415.0,11415.0,ENSG00000167286,CD3D,33.0,33.0,True,eligible,True,0.65673214,0.9727976,0.9087705,0.91737,1048576.0,349997.0,True,True,True,True,True,True,True,True,True,True,True
39
+ CD3E,exact_symbol,True,11414.0,11414.0,ENSG00000198851,CD3E,36.0,36.0,True,eligible,True,0.8166702,1.1337454,0.87056243,0.7330141,1048576.0,422512.0,True,True,True,True,True,True,True,True,True,True,True
40
+ TRAC,absent_raw_axis,False,,,,,,,,,,,,,,,,,,,,,,,,,,
41
+ CD247,exact_symbol,True,1522.0,1522.0,ENSG00000198821,CD247,1986.0,1986.0,True,eligible,False,1.126497,1.6263591,0.89352614,0.9103548,1048576.0,523293.0,True,True,True,True,True,True,True,True,True,True,True
42
+ NKG7,exact_symbol,True,17689.0,17689.0,ENSG00000105374,NKG7,5.0,5.0,True,eligible,True,0.6142698,1.7599711,1.3519988,5.408518,1048576.0,225889.0,True,True,True,True,True,True,True,True,True,True,True
43
+ GNLY,exact_symbol,True,2510.0,2510.0,ENSG00000115523,GNLY,2.0,2.0,True,eligible,True,0.6052069,1.9070042,1.4233482,6.131487,1048576.0,211270.0,True,True,True,True,True,True,True,True,True,True,True
44
+ PRF1,exact_symbol,True,9805.0,9805.0,ENSG00000180644,PRF1,168.0,168.0,True,eligible,False,0.37182128,0.81744576,1.1626792,4.125346,1048576.0,177323.0,True,True,True,True,True,True,True,True,True,True,True
45
+ GZMB,exact_symbol,True,13084.0,13084.0,ENSG00000100453,GZMB,122.0,122.0,True,eligible,False,0.2852201,0.6841223,1.2233568,4.752958,1048576.0,126194.0,True,True,True,True,True,True,True,True,True,True,True