Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/readout-zs_cal_s13.log

@@ -0,0 +1,22 @@
+{
+  "rule": "counts ~ Poisson(generated_counts * library_scale), independent per entry, single draw",
+  "seed": 20260916,
+  "library_scale": 1.0,
+  "library_size_handling": "no rescaling (library_scale=1.0): E[library] = generated library",
+  "unlabeled_category": "Unknown",
+  "n_cells": 95000,
+  "n_genes": 6000,
+  "input_row_sum_median": 1107.2127075195312,
+  "output_row_sum_median": 1107.0,
+  "input_nonzero_fraction": 0.046742136842105264,
+  "output_nonzero_fraction": 0.03527827894736842,
+  "method_name": "generated_GSE198533_all19_lora3study_zs_cal_s13",
+  "batch_prefix": "",
+  "input_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/generated/zs_cal_s13.npz",
+  "input_matrix_key": "generated_counts",
+  "input_n_cells": 95000,
+  "subset_rows": 95000,
+  "subset_seed": null,
+  "input_npz_sha256": "d50ff3ea5c5bb91fe9fc53a99cf89850459b7f3bccd892c596f9aa9814dc9a30",
+  "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/work/zs_cal_s13_poisson.h5ad"
+}

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/readout-zs_raw_s04.log

@@ -0,0 +1,22 @@
+{
+  "rule": "counts ~ Poisson(generated_counts * library_scale), independent per entry, single draw",
+  "seed": 20260916,
+  "library_scale": 1.0,
+  "library_size_handling": "no rescaling (library_scale=1.0): E[library] = generated library",
+  "unlabeled_category": "Unknown",
+  "n_cells": 95000,
+  "n_genes": 6000,
+  "input_row_sum_median": 521.0957641601562,
+  "output_row_sum_median": 522.0,
+  "input_nonzero_fraction": 0.06405771929824561,
+  "output_nonzero_fraction": 0.03972617192982456,
+  "method_name": "generated_GSE198533_all19_lora3study_zs_raw_s04",
+  "batch_prefix": "",
+  "input_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/generated/zs_raw_s04.npz",
+  "input_matrix_key": "generated_counts",
+  "input_n_cells": 95000,
+  "subset_rows": 95000,
+  "subset_seed": null,
+  "input_npz_sha256": "d119ee01021f8300035150cff230e8639e340b11b3bb347bbe0fdc529a0a60c8",
+  "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/work/zs_raw_s04_poisson.h5ad"
+}

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/readout-zs_raw_s13.log

@@ -0,0 +1,22 @@
+{
+  "rule": "counts ~ Poisson(generated_counts * library_scale), independent per entry, single draw",
+  "seed": 20260916,
+  "library_scale": 1.0,
+  "library_size_handling": "no rescaling (library_scale=1.0): E[library] = generated library",
+  "unlabeled_category": "Unknown",
+  "n_cells": 95000,
+  "n_genes": 6000,
+  "input_row_sum_median": 521.6550903320312,
+  "output_row_sum_median": 522.0,
+  "input_nonzero_fraction": 0.0640769649122807,
+  "output_nonzero_fraction": 0.03974312280701754,
+  "method_name": "generated_GSE198533_all19_lora3study_zs_raw_s13",
+  "batch_prefix": "",
+  "input_npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/generated/zs_raw_s13.npz",
+  "input_matrix_key": "generated_counts",
+  "input_n_cells": 95000,
+  "subset_rows": 95000,
+  "subset_seed": null,
+  "input_npz_sha256": "3cb6f5531e4b65ca5e4470fe23ee89b5cbc136197b3108b1a1551d345211920d",
+  "out": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/work/zs_raw_s13_poisson.h5ad"
+}

paper-releases/pbisc-diffusion/updates/20261004T051658Z-behcet-c1q-lora3/diffusion/dataset/server_1/model8/plans/behcet_c1q_lora3_20261004/logs/run_gpu_20261004T132321.log

@@ -0,0 +1,29 @@
+2026-10-04T13:23:22 runner start; arms /home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/behcet_c1q_lora3_20261004/queues/arms.txt
+2026-10-04T13:23:26 --- train lora3 (ok: 64C)
+2026-10-04T13:25:39 train done: 3000 steps 105.7 s de5d797455c9
+2026-10-04T13:25:43 --- sample zs_raw_s13 ckpt=base seed=20260913 (ok: 67C)
+2026-10-04T13:29:42 zs_raw_s13 sampled: 95000 cells 3cb6f5531e4b
+2026-10-04T13:29:53 zs_raw_s13 read-out done
+2026-10-04T13:29:57 zs_raw_s13 labels done
+2026-10-04T13:30:08 zs_raw_s13 NPZ moved to spark-0110 (sha checked)
+2026-10-04T13:30:12 --- sample zs_cal_s13 ckpt=base seed=20260913 (ok: 55C)
+2026-10-04T13:43:56 zs_cal_s13 sampled: 95000 cells d50ff3ea5c5b
+2026-10-04T13:44:06 zs_cal_s13 read-out done
+2026-10-04T13:44:11 zs_cal_s13 labels done
+2026-10-04T13:44:21 zs_cal_s13 NPZ moved to spark-0110 (sha checked)
+2026-10-04T13:44:25 --- sample lora3_raw_s13 ckpt=lora seed=20260913 (ok: 55C)
+2026-10-04T13:54:01 lora3_raw_s13 sampled: 95000 cells 5ed5f2f3efd5
+2026-10-04T13:54:11 lora3_raw_s13 read-out done
+2026-10-04T13:54:15 lora3_raw_s13 labels done
+2026-10-04T13:54:26 lora3_raw_s13 NPZ moved to spark-0110 (sha checked)
+2026-10-04T13:54:31 --- sample lora3_raw_s04 ckpt=lora seed=20261004 (ok: 56C)
+2026-10-04T14:03:53 lora3_raw_s04 sampled: 95000 cells d09ec3161e72
+2026-10-04T14:04:03 lora3_raw_s04 read-out done
+2026-10-04T14:04:06 lora3_raw_s04 labels done
+2026-10-04T14:04:17 lora3_raw_s04 NPZ moved to spark-0110 (sha checked)
+2026-10-04T14:04:21 --- sample zs_raw_s04 ckpt=base seed=20261004 (ok: 55C)
+2026-10-04T14:12:34 zs_raw_s04 sampled: 95000 cells d119ee01021f
+2026-10-04T14:12:44 zs_raw_s04 read-out done
+2026-10-04T14:12:48 zs_raw_s04 labels done
+2026-10-04T14:13:00 zs_raw_s04 NPZ moved to spark-0110 (sha checked)
+2026-10-04T14:13:00 runner finished