junidude14 commited on
Commit
f3ed254
·
verified ·
1 Parent(s): 3f661c0

Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/cv4/state_types.tsv ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 3004
3
+ B cell|Memory B cell B cell 3520
4
+ B cell|Naive B cell B cell 5888
5
+ B cell|Plasma cell B cell 659
6
+ B cell|Transitional B cell B cell 2465
7
+ DC|ASDC DC 48
8
+ DC|cDC1 DC 132
9
+ DC|cDC2 DC 2675
10
+ DC|pDC DC 840
11
+ Monocyte|CD14 monocyte Monocyte 19153
12
+ Monocyte|CD16 monocyte Monocyte 5305
13
+ Monocyte|Intermediate monocyte Monocyte 12571
14
+ NK cell|CD56bright NK cell NK cell 2907
15
+ NK cell|CD56dim NK cell NK cell 14570
16
+ NK cell|Proliferating NK cell NK cell 4445
17
+ Other|Erythrocyte Other 6207
18
+ Other|ILC Other 2038
19
+ Other|Platelet Other 1916
20
+ Other|Progenitor cell Other 191
21
+ T cell|CD8aa T cell 7749
22
+ T cell|DN T cell T cell 13240
23
+ T cell|MAIT T cell 13979
24
+ T cell|Memory CD4 T cell T cell 20510
25
+ T cell|Memory CD8 T cell T cell 17133
26
+ T cell|Naive CD4 T cell T cell 20524
27
+ T cell|Naive CD8 T cell T cell 23423
28
+ T cell|Proliferating T cell T cell 1520
29
+ T cell|Treg T cell 5972
30
+ T cell|gdT T cell 7679
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/cv4_full/SPLIT.json ADDED
@@ -0,0 +1,63 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "giroux2022",
3
+ "kind": "cv",
4
+ "idx": 4,
5
+ "reference": [
6
+ "0B943B_d0",
7
+ "0B943B_d14",
8
+ "2AD75E_d0",
9
+ "2AD75E_d7",
10
+ "2AD75E_d14",
11
+ "B85D75_d0",
12
+ "B85D75_d7",
13
+ "180E1A_d0",
14
+ "180E1A_d7",
15
+ "180E1A_d14",
16
+ "82CCF5_d0",
17
+ "82CCF5_d7",
18
+ "82CCF5_d14",
19
+ "BAAF62_d0",
20
+ "BAAF62_d7",
21
+ "BAAF62_d14",
22
+ "450905_d0",
23
+ "450905_d14",
24
+ "0BF51C_d0",
25
+ "0BF51C_d7",
26
+ "0BF51C_d14"
27
+ ],
28
+ "mixture": [
29
+ "7085CA_d0",
30
+ "7085CA_d7",
31
+ "7085CA_d14"
32
+ ],
33
+ "run_json_check": true,
34
+ "n_train_rows": 16,
35
+ "n_inner_val_rows": 5,
36
+ "n_reference_samples": 21,
37
+ "n_mixture_samples": 3,
38
+ "reference_cells": 220263,
39
+ "states": 29,
40
+ "states_merged_minor": 0,
41
+ "types": [
42
+ "B cell",
43
+ "DC",
44
+ "Monocyte",
45
+ "NK cell",
46
+ "Other",
47
+ "T cell"
48
+ ],
49
+ "missing_types": [],
50
+ "bp_axis_genes": 17988,
51
+ "genes_kept": 15666,
52
+ "genes_dropped_not_bulk_valid": 479,
53
+ "genes_dropped_zero_reference": 1843,
54
+ "gene_mode": "full",
55
+ "aggregates_sha256": "6c0178da65a0929edf63875236d62080254279829c59603e489edeb64ae86e2f",
56
+ "files": {
57
+ "reference.tsv.gz": "3306e352e976b68ceb14466faaf05d81940443481dbf22a1f109e4c230d1c5f8",
58
+ "state_types.tsv": "afeed830fb59d465ec34a35c658332272636eb79a862f7560cb0939f5042793a",
59
+ "mixture.tsv.gz": "13ed0b02eec83da680128b5dc013dfd7029cd9191954b6451370a30b57d7a31c"
60
+ },
61
+ "tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
62
+ "common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
63
+ }
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/cv4_full/state_types.tsv ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ state type n_cells
2
+ B cell|Effector B cell B cell 3004
3
+ B cell|Memory B cell B cell 3520
4
+ B cell|Naive B cell B cell 5888
5
+ B cell|Plasma cell B cell 659
6
+ B cell|Transitional B cell B cell 2465
7
+ DC|ASDC DC 48
8
+ DC|cDC1 DC 132
9
+ DC|cDC2 DC 2675
10
+ DC|pDC DC 840
11
+ Monocyte|CD14 monocyte Monocyte 19153
12
+ Monocyte|CD16 monocyte Monocyte 5305
13
+ Monocyte|Intermediate monocyte Monocyte 12571
14
+ NK cell|CD56bright NK cell NK cell 2907
15
+ NK cell|CD56dim NK cell NK cell 14570
16
+ NK cell|Proliferating NK cell NK cell 4445
17
+ Other|Erythrocyte Other 6207
18
+ Other|ILC Other 2038
19
+ Other|Platelet Other 1916
20
+ Other|Progenitor cell Other 191
21
+ T cell|CD8aa T cell 7749
22
+ T cell|DN T cell T cell 13240
23
+ T cell|MAIT T cell 13979
24
+ T cell|Memory CD4 T cell T cell 20510
25
+ T cell|Memory CD8 T cell T cell 17133
26
+ T cell|Naive CD4 T cell T cell 20524
27
+ T cell|Naive CD8 T cell T cell 23423
28
+ T cell|Proliferating T cell T cell 1520
29
+ T cell|Treg T cell 5972
30
+ T cell|gdT T cell 7679
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/giroux2022/fewshot0/SPLIT.json ADDED
@@ -0,0 +1,67 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "giroux2022",
3
+ "kind": "fewshot",
4
+ "idx": 0,
5
+ "reference": [
6
+ "0B943B_d0",
7
+ "0B943B_d14",
8
+ "7085CA_d0",
9
+ "7085CA_d7",
10
+ "7085CA_d14",
11
+ "B85D75_d0",
12
+ "B85D75_d7",
13
+ "180E1A_d0",
14
+ "180E1A_d7",
15
+ "180E1A_d14",
16
+ "BAAF62_d0",
17
+ "BAAF62_d7",
18
+ "BAAF62_d14"
19
+ ],
20
+ "mixture": [
21
+ "450905_d0",
22
+ "450905_d14",
23
+ "2AD75E_d0",
24
+ "2AD75E_d7",
25
+ "2AD75E_d14",
26
+ "82CCF5_d0",
27
+ "82CCF5_d7",
28
+ "82CCF5_d14",
29
+ "0BF51C_d0",
30
+ "0BF51C_d7",
31
+ "0BF51C_d14"
32
+ ],
33
+ "train_donors": [
34
+ "0B943B",
35
+ "180E1A",
36
+ "7085CA",
37
+ "B85D75",
38
+ "BAAF62"
39
+ ],
40
+ "run_json_check": true,
41
+ "n_reference_samples": 13,
42
+ "n_mixture_samples": 11,
43
+ "reference_cells": 148970,
44
+ "states": 29,
45
+ "states_merged_minor": 0,
46
+ "types": [
47
+ "B cell",
48
+ "DC",
49
+ "Monocyte",
50
+ "NK cell",
51
+ "Other",
52
+ "T cell"
53
+ ],
54
+ "missing_types": [],
55
+ "bp_axis_genes": 5556,
56
+ "genes_kept": 5400,
57
+ "genes_dropped_not_bulk_valid": 0,
58
+ "genes_dropped_zero_reference": 156,
59
+ "aggregates_sha256": "9b80e097aafc8e9f46bba6166b50af98391afa05d8584acf7066a697762db5c7",
60
+ "files": {
61
+ "reference.tsv.gz": "e024f54b16b5b2be53f6099278d1b364bd2b4e9e8cc10eaa017cdffb3c4b69bd",
62
+ "state_types.tsv": "46c785283ac4bfaa1c8bbe338e99c3292ad02c350340420b12a428b9f8c6d4c9",
63
+ "mixture.tsv.gz": "0589d78e179a4e2c3b45cbe01d297065d680223f5937cbc2b874800b0ea3429b"
64
+ },
65
+ "tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
66
+ "common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
67
+ }