Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw0_full/contrast.csv

@@ -0,0 +1,17 @@
+genes,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast
+zero_filled,T cell,mean_cp10k,3259,0.18648099987345676,0.28779071017741836,0.026253166456139523,0.5765955560920323
+zero_filled,T cell,pseudobulk_log1p_cpm,3259,0.1637553602373158,0.23446571402689154,-0.013935827087191571,0.7374440947022772
+zero_filled,B cell,mean_cp10k,3304,0.1768543129677312,0.30092059959087647,0.06009909830896986,0.41437137961900455
+zero_filled,B cell,pseudobulk_log1p_cpm,3304,0.27814546142675955,0.2824129554276003,0.14898070852473358,0.5686033534652141
+zero_filled,Monocyte,mean_cp10k,3285,0.5748098852872519,0.5511838088445075,0.36324351240436853,0.6050625364746239
+zero_filled,Monocyte,pseudobulk_log1p_cpm,3285,0.5952841611885457,0.6171521141280452,0.21769697923414927,0.7968879680677063
+zero_filled,NK cell,mean_cp10k,3226,0.08918358706180501,0.20406534279418406,0.011543155334417268,0.3859492946074925
+zero_filled,NK cell,pseudobulk_log1p_cpm,3226,0.040936108513819736,0.06147951634862929,0.02137049174397044,0.3395115904995236
+covered,T cell,mean_cp10k,3065,0.2003869219367565,0.20030160919449247,0.08460082987611059,0.7083245230736189
+covered,T cell,pseudobulk_log1p_cpm,3065,0.16970581032251025,0.20425952496342914,0.01259301981364911,0.7941574783195247
+covered,B cell,mean_cp10k,3111,0.18799758270216,0.21361712643748432,0.09438215266762723,0.5083761241651366
+covered,B cell,pseudobulk_log1p_cpm,3111,0.28335763585075696,0.2669717053956064,0.15742089487723146,0.6119474021875765
+covered,Monocyte,mean_cp10k,3096,0.6198969649805026,0.5100541108339969,0.42591847878434036,0.7084024208327326
+covered,Monocyte,pseudobulk_log1p_cpm,3096,0.6090615149258813,0.6293687240769635,0.1913115569061349,0.839313511126901
+covered,NK cell,mean_cp10k,3033,0.09514809372232697,0.10272790719424128,0.05283035193289699,0.4764579501859523
+covered,NK cell,pseudobulk_log1p_cpm,3033,0.03980321514863277,0.026689260260473243,0.03229833136803063,0.36516805014591386

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw0_full/per_donor.csv

@@ -0,0 +1,78 @@
+donor,group,bp_comp_l1_final_cells,bp_comp_l1_first_cells,bp_comp_l1_final_mrna,bp_comp_l1_first_mrna,lora_comp_l1,bp_first_T cell,bp_final_T cell,obs_T cell,bp_first_B cell,bp_final_B cell,obs_B cell,bp_first_Monocyte,bp_final_Monocyte,obs_Monocyte,bp_first_NK cell,bp_final_NK cell,obs_NK cell,bp_first_DC,bp_final_DC,obs_DC,bp_first_Other,bp_final_Other,obs_Other
+Abd-PS04,ped_sepsis,0.6401571129349196,0.4790309948575011,0.7107917468363978,0.5323979496802684,0.3471215513549888,0.24541839717206734,0.001270935352283581,0.14094329234721967,0.011550580398713909,0.04987049166437419,0.17030647825289044,0.688227555310567,0.6579507591930647,0.5608368507983116,4.142169810113742e-06,0.21015539902867525,0.02147182969352175,0.011503606241766684,0.03813499688767259,0.003853918150119288,0.04329571870707484,0.04261741787392981,0.10258763075793724
+Abd-PS05,ped_sepsis,0.6417611296847695,0.6101819856179782,0.6421751624337366,0.6032844412789391,0.2085106874638937,0.4398933451152727,0.0163671385210838,0.30387059503177355,0.29007360259982873,0.4811773210431561,0.5060658578856152,0.17113816673382992,0.16814107823160612,0.07019064124783363,1.1603320240600934e-05,0.24207665253771563,0.0891103408434431,0.01883526741595864,0.00046579015143428064,0.008954361640670132,0.08004801481486952,0.09177201951500413,0.021808203350664357
+Abd-PS07,ped_sepsis,1.0296033236890714,0.24270623493867455,1.1095343406458904,0.33655997850985625,0.3567634408602151,0.7501746724759549,0.3546756013165015,0.8626152073732719,0.048892373572469755,0.06926976184201902,0.023329493087557603,0.07049764738629018,0.051199277928663495,0.002304147465437788,0.11646729358760043,0.494924311382503,0.09331797235023041,0.004735434259382422,0.018647942027755694,0.0002880184331797235,0.009232578718302274,0.011283105502557256,0.018145161290322582
+Abd-PS19,ped_sepsis,0.6713026885943014,0.311982957431084,0.7126095970036224,0.3454870620482528,0.3154789579158316,0.6180145906693564,0.18745416019620967,0.4622995991983968,0.0366079917016633,0.11321190735255132,0.11209919839679358,0.2912929193127416,0.25419498141741753,0.2937124248496994,0.0015530038616345487,0.3765041613726853,0.05586172344689379,0.01593279986983296,0.029552510040851993,0.0156563126252505,0.03659869458477124,0.03908227962028416,0.06037074148296593
+Abd-PS20,ped_sepsis,0.2294473091762439,0.6028497378914456,0.19538945941799424,0.5478029103592545,0.3678100466648366,0.6024043003490058,0.3347290544674256,0.30496843261048584,0.3744989848150022,0.5628639299136412,0.5780949766675817,0.003920992681775858,0.007031623639096157,0.08770244304144935,4.724066270786324e-06,0.09278625534990294,0.007823222618720834,0.004537999285709505,4.0753984245684637e-05,0.0005489980785067252,0.014632998802235741,0.0025483826456883085,0.02086192698325556
+Abd-PS23,ped_sepsis,0.5328629239036586,0.6922141192939656,0.37040017944880443,0.5206480735537186,0.6676379670457183,0.507761193240438,0.14544237690113818,0.2529589231840334,0.13381963841288705,0.29321395652156096,0.3272220932931075,0.18216511481297815,0.19860036879246643,0.32142028312833604,1.0763130865172855e-05,0.19372070282600087,0.013460199582269667,0.017453607628278488,1.787097799754531e-06,0.002088651659317707,0.15878968277455313,0.16902080786103385,0.08284984915293572
+Abd-PS27,ped_sepsis,0.25315123963175534,0.23159794963954802,0.28359958923558637,0.2987933048581692,0.6278967504685123,0.7239710508138938,0.667121649869509,0.6126021003500584,0.015464435760945762,0.0580004643748923,0.06078285774901877,0.10669933491121449,0.11832923298975924,0.13196138750397793,3.981595877683129e-06,0.07742814692212625,0.010289593720165482,0.007400216357635783,0.007887709096163533,0.0029701920016972526,0.14646098056043239,0.07123279674754966,0.1813938686750822
+Abd-S102,adult_sepsis,1.5723547516219094,1.212177258588099,1.593461429380407,1.3446324304363135,0.377901317633866,0.34704702367404344,0.03540600155379019,0.47981497056349875,0.015740575656129956,0.051419145763934686,0.39318755256518084,0.49159479969292624,0.5035320627419521,0.0053616484440706475,5.1843278375833776e-06,0.24119645377280186,0.095878889823381,0.008283941745646463,0.002272288446607979,0.0007359125315391085,0.13732847490341643,0.16617404772091326,0.02502102607232969
+Abd-S103,adult_sepsis,0.9648338028491321,0.3695018752303806,1.151444871897364,0.5692319063763593,0.5433747214262974,0.4833414511325063,0.13176434104794688,0.4813753581661891,0.1822964284200668,0.29959562128319644,0.14782977820227103,0.1412692100916456,0.14338939042351811,0.0024408362517245037,6.919750813726288e-06,0.2336375567028881,0.04393505253104107,0.009702067221740949,1.438204218802128e-05,0.00021224663058473945,0.1833839233832266,0.1915987085002625,0.3242067282181895
+Abd-S120,adult_sepsis,0.6370219901042269,0.3860596656166361,0.7101385339202613,0.4045882915122957,0.2042780563721251,0.456033477776023,0.08947600018796392,0.3140238630468615,0.010910360020882066,0.032140899699507744,0.11049628220646723,0.5126297345185098,0.4738683259577487,0.46446481065191075,0.00225079190579562,0.3725162234866628,0.07297250561992046,0.0037198973597130014,0.0104283650266887,0.0008646031471554556,0.014455738419076518,0.021570185641428232,0.03717793532768459
+Abd-S123,adult_sepsis,0.4928655985834065,0.41987663018294413,0.5139558420272119,0.41274033527182374,0.3444258877070433,0.3360531182440544,0.027757474198625974,0.16986823305286552,0.013758037703208688,0.063045685247631,0.08779171297031275,0.4476017536479507,0.4474376510669914,0.5027782187648833,0.028654266949970586,0.35179554500312055,0.10938244165740593,0.0094979262914155,0.004813472735955427,0.0007937767899666614,0.16443489716340023,0.10515017174767585,0.1293856167645658
+Abd-S156,adult_sepsis,0.5694199635921727,0.6047651956329263,0.5978949418049848,0.5293990683255992,0.4862958309537408,0.24611640092827403,0.09548322371335763,0.3343803540833809,0.004452338314105574,0.036283093748123066,0.08209594517418618,0.34865015587519954,0.4224478814525757,0.39406053683609366,2.6148413759083457e-05,0.21923744885777738,0.0910908052541405,0.0025893975559478925,0.0020269671543557332,0.0012849800114220445,0.3981655589127141,0.22452138507381042,0.0970873786407767
+Abd-S39,adult_sepsis,0.7552620397265828,0.9495782658098391,0.4768551741007978,0.6092788304716587,0.9346231647634584,0.23169397803652456,0.04699903184659587,0.13819622465625728,0.008223635939530521,0.05019283518169287,0.06152412025168958,0.31004510690391196,0.41960660322725496,0.6933115823817292,0.011416605724488145,0.22363508234572582,0.049638778839431366,0.005215418026262349,7.126311066513235e-07,0.0013982754602656724,0.4334052553692825,0.25956573476762385,0.05593101841062689
+Abd-S42,adult_sepsis,0.7576402613061878,0.26760042086358965,0.86291382722758,0.3089838549615045,0.5138407187452413,0.645620419926928,0.26515288959121913,0.5748439165524593,0.058805448167931665,0.10683077660800895,0.09760925841327851,0.23117262966867472,0.23329883532529663,0.17039744175422566,0.024628169162332805,0.3622274566530515,0.05862646566164154,0.0039235610189240315,0.004771269771929424,0.0016750418760469012,0.03584977205520894,0.02771877205049435,0.0968478757423481
+Abd-S47,adult_sepsis,0.23692164125841475,0.04371073004316443,0.320099729018321,0.11395495127781471,0.2998489524526408,0.700344562772606,0.6201200139252914,0.7027976414502571,0.21983606828442864,0.26448264232506824,0.20474219044034625,0.03225535248038249,0.043130862243517525,0.03224187680341237,6.929218960885411e-06,0.06690050888460855,0.019069125580228326,0.00028718388510703003,1.1342274828223092e-06,0.0006272738677706687,0.04726990335851492,0.00536483839403142,0.040521891857985194
+Abd-S51,adult_sepsis,0.38907175348661094,0.32559301265857526,0.5234389586424741,0.38579228391703635,0.8114891964068949,0.41552775177721196,0.12895884001124677,0.25273124544792425,0.17940175109606643,0.25291454979377087,0.269482884195193,0.35311792325726543,0.3715655661229888,0.3551347414420976,0.002856538458639919,0.20314813700836254,0.03670793882010197,0.00029129924174867676,0.01312151811304664,0.0014566642388929353,0.04880473616906776,0.030291388950584426,0.08448652585579024
+Abd-S54,adult_sepsis,0.7293043509421423,0.5008170786743367,0.7775918496850596,0.6087551642285616,0.3335369659759529,0.5116360410825479,0.12076609006998794,0.4854182655410591,0.07439873100458282,0.14266178595713233,0.1364799181376311,0.21871835488302474,0.20366847711414668,0.012918905090816066,0.152424758310078,0.4831626075413238,0.340752110514198,0.00957028925234052,0.013908350060413266,0.0011511895625479663,0.03325182546742609,0.03583268925699599,0.023279611153747763
+Abd-S57,adult_sepsis,1.3163201400093092,0.8177543713324951,1.3932887125701081,0.9942021428723561,0.8045567140158142,0.5463190316831441,0.19314396998709313,0.8422783570079071,5.489936960089777e-06,9.771519090538703e-07,0.009026660135749773,0.39060860986986223,0.3384631408305897,0.016164019312854244,0.003141012928926813,0.35433289219354813,0.10671051710866979,0.0009323480094783586,0.03657793461140076,0.0012595339724302008,0.05899350757162846,0.07748108522545913,0.024560912462388916
+Abd-S79,adult_sepsis,0.8564064024172174,0.5658701535624864,0.9817632650270852,0.756046289334901,0.2461481849825957,0.5325712144403545,0.21532090540742355,0.5500994530084535,0.12633103462289924,0.2155669538443749,0.30892590750870214,0.29486044915026,0.3307289320896669,0.024365987071108902,0.01092249514008785,0.21420668616831795,0.09373446046742914,0.006915454192801436,5.8616317315391766e-05,0.00012431626056688214,0.028399352453596996,0.024117906172901403,0.022749875683739432
+Abd-S83,adult_sepsis,1.2201416808845642,1.1716460493068925,1.325972016756515,1.2888091512307889,0.9502122725076504,0.2775356460194131,1.8318483266466368e-05,0.3924947656627476,0.0003798161019279179,0.006333304699603745,0.16991464003865356,0.5493145788516763,0.5652905012417913,0.049927524561120956,7.68813260519168e-06,0.24732371128224015,0.3013367692059913,0.00396100142492674,0.01842709801734877,0.0009663391850539539,0.16880126946945073,0.16260706627574956,0.0853599613464326
+Abd-S98,adult_sepsis,1.6839089924900947,1.13459234279861,1.691318623017304,1.3094423991321058,0.9625708582834333,0.38891532775778836,0.015214397965940322,0.7477045908183633,0.0008191100035514049,0.00011653493072896718,0.10958083832335329,0.5430765230346303,0.522153713979826,0.019560878243512974,0.0106340614980379,0.37529595981228364,0.11037924151696607,0.0027380758146811207,0.017085509710922386,0.0015968063872255488,0.05381690189131097,0.07013388360029879,0.011177644710578843
+HC01,adult_HC,0.7662771719518351,0.2684668078879791,0.8484583106338737,0.2824086679878192,0.105497296765949,0.6658978847749054,0.29865470595133703,0.5901897178806645,0.04642070502912449,0.06515173059225216,0.09938071365378945,0.24480263801308297,0.14966197305793913,0.1862774009633343,0.025763987412656526,0.39464247175840705,0.06772830040302762,0.010017198012240132,0.08463294701019705,0.028408532389658903,0.0070975867579904685,0.007256171629867684,0.028015334709525212
+HC05,adult_HC,0.8983807329378606,0.13421080212326478,0.9609198781339867,0.20373079615853323,0.2517682468021068,0.7107715721666176,0.2927943530610231,0.6924604966139954,0.04443303631176199,0.06759975734303747,0.09498871331828443,0.1168699039301482,0.07136554593319233,0.08099322799097065,0.11747746898292528,0.5300087839291507,0.10455981941309254,0.006390975873522905,0.03538925748334624,0.01164785553047404,0.004057042735024066,0.0028423022502502295,0.015349887133182845
+HC09,adult_HC,0.8511195893882795,0.18037213086817316,0.8858744355524993,0.19015254061019968,0.1847828063649514,0.6982195871357768,0.3060563056111593,0.6319487497416821,0.018387006052806517,0.02903512157338337,0.06013639181649101,0.1768393859238523,0.11327868571289236,0.1529241578838603,0.09874043632771798,0.5027442161975799,0.11365984707584212,0.006214003354326721,0.04887468161703913,0.012399256044637322,0.0015995812055198178,1.098928794567967e-05,0.028931597437487085
+HC12,adult_HC,0.7216626938379196,0.28702346055054845,0.764930165050685,0.2949986560347546,0.3300860215053764,0.6511325569335352,0.24543009714179967,0.5456989247311828,0.02281085705930546,0.030851162063353418,0.05725806451612903,0.18431465721270665,0.11948467462704489,0.14623655913978495,0.12537853470812813,0.5418138756487187,0.2196236559139785,0.00397869509919596,0.04751209492615515,0.008870967741935484,0.012384698987128403,0.014908095592928335,0.022311827956989248
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw0_full/summary.json

@@ -0,0 +1,149 @@
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+}

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/results/ye2026_sepsis/fewshot_draw1/contrast.csv

@@ -0,0 +1,17 @@
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+covered,Monocyte,pseudobulk_log1p_cpm,3265,0.5295311259094979,0.6043570530314493,0.10890757848957837,0.7877502127239763
+covered,NK cell,mean_cp10k,3214,0.02839435077053949,0.0625198626280434,-0.013353850341339006,0.6212179583279719
+covered,NK cell,pseudobulk_log1p_cpm,3214,-0.005141268915797665,0.010102977945509852,-0.019130193401764174,0.7479286343840852