Archive 1 checkpoints (1-1)
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paper-releases/pbisc-diffusion/updates/20260930T065633Z-summary-deck-scsemi-final/diffusion/metadata/NOTE.md
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# PBISC-diffusion update 20260930T065633Z-summary-deck-scsemi-final
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Paper summary deck 2026-09-30 (presentations/2026-09-30--paper-summary--r00): 29 English slides over the ten paper sections (model, backbone, width/context/panel ablation, SLE vs scSemiProfiler, real bulk vs pseudobulk, paired fine-tuning, LoRA and K ablations, pairs needed, five-cohort validation with all 25 scSemiProfiler draws, planned paired-subset cohorts). Deck, PDF, frozen 12:00 draft, builder, figure scripts, figures and every plotted/quoted number table. CPU only; no new checkpoint or inference. || Within-dataset paired fine-tuning benchmark of the final 6k 1x E16 model (plans/paired_finetune_intradataset_20260927): LoRA (recommended protocol), full and condition-encoder fine-tuning, sc-only control, LoRA learning curve, K-augmentation null, 5-pair deployment scenario, on ImMicro, Ye 2026 sepsis, Imperial ESKD COVID, Giroux 2022 and Ji 2025 (whole-blood bulk); scores (scANVI composition, precision/coverage, contrast logFC r, top-50 DEG), figures, paired-data manifests, conditions, run receipts and the recommended-protocol LoRA checkpoints. The scSemiProfiler 5-pair baseline: every finished draw is included as score tables and a completed location; draws not yet finished at request time (none on 2026-09-30: 25/25 done) are planned locations. Not uploaded: per-cell count arrays and non-recommended fine-tuned checkpoints (sha256 recorded in BUILD/MANIFEST and RUN.json). Server_2 Imperial LoRA checkpoints already archived by 20260928T225702Z-paired-ft-scsemi-delta (now archive symlinks) are not re-sent.
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Payload states are recorded as supplied. Inference locations are pointers, not archived generated outputs.
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