junidude14 commited on
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Archive 4 checkpoints (1-4)

Browse files
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_cellgroups.csv ADDED
The diff for this file is too large to render. See raw diff
 
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_celltypes.csv ADDED
@@ -0,0 +1,437 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset_prefix,celltype_l1,celltype_l2,n_cells
2
+ 001_A,B cell,Plasma cell,6644
3
+ 001_A,B cell,__unspecified__,151570
4
+ 001_A,DC,__unspecified__,18203
5
+ 001_A,Monocyte,CD14 monocyte,356229
6
+ 001_A,NK cell,__unspecified__,92554
7
+ 001_A,No label (overlay),No label (overlay),8265
8
+ 001_A,Progenitor cell,Progenitor cell,807
9
+ 001_A,T cell,__unspecified__,629404
10
+ 005_A,B cell,Memory B cell,30234
11
+ 005_A,B cell,Naive B cell,65702
12
+ 005_A,B cell,Plasma cell,5651
13
+ 005_A,B cell,Transitional B cell,29889
14
+ 005_A,DC,__unspecified__,4751
15
+ 005_A,Erythrocyte,Erythrocyte,290
16
+ 005_A,ILC,ILC,444
17
+ 005_A,Monocyte,CD14 monocyte,36130
18
+ 005_A,Monocyte,CD16 monocyte,7006
19
+ 005_A,Monocyte,Intermediate monocyte,15743
20
+ 005_A,NK cell,__unspecified__,164933
21
+ 005_A,No label (overlay),No label (overlay),131
22
+ 005_A,Platelet,Platelet,1810
23
+ 005_A,Progenitor cell,Progenitor cell,1812
24
+ 005_A,T cell,DN T cell,1824
25
+ 005_A,T cell,MAIT,8835
26
+ 005_A,T cell,Memory CD4 T cell,320261
27
+ 005_A,T cell,Memory CD8 T cell,177460
28
+ 005_A,T cell,Naive CD4 T cell,259012
29
+ 005_A,T cell,Naive CD8 T cell,52538
30
+ 005_A,T cell,Treg,26531
31
+ 005_A,T cell,__unspecified__,19071
32
+ 005_A,T cell,gdT,18922
33
+ 006_A,B cell,Memory B cell,35114
34
+ 006_A,B cell,Naive B cell,36778
35
+ 006_A,B cell,Plasma cell,5468
36
+ 006_A,B cell,__unspecified__,13994
37
+ 006_A,DC,__unspecified__,894
38
+ 006_A,DC,cDC1,554
39
+ 006_A,DC,cDC2,13207
40
+ 006_A,ILC,ILC,707
41
+ 006_A,Monocyte,CD14 monocyte,202124
42
+ 006_A,Monocyte,CD16 monocyte,157807
43
+ 006_A,Monocyte,Intermediate monocyte,46628
44
+ 006_A,NK cell,__unspecified__,23234
45
+ 006_A,No label (overlay),No label (overlay),26020
46
+ 006_A,Platelet,Platelet,14799
47
+ 006_A,Progenitor cell,Progenitor cell,135
48
+ 006_A,T cell,DN T cell,489
49
+ 006_A,T cell,MAIT,23001
50
+ 006_A,T cell,Memory CD4 T cell,135016
51
+ 006_A,T cell,Memory CD8 T cell,74666
52
+ 006_A,T cell,Naive CD4 T cell,157616
53
+ 006_A,T cell,Naive CD8 T cell,89029
54
+ 006_A,T cell,Treg,15497
55
+ 006_A,T cell,__unspecified__,162152
56
+ 006_A,T cell,gdT,30695
57
+ 007_A,B cell,Memory B cell,6177
58
+ 007_A,B cell,Naive B cell,6760
59
+ 007_A,B cell,Plasma cell,1473
60
+ 007_A,DC,__unspecified__,6047
61
+ 007_A,Monocyte,CD14 monocyte,17562
62
+ 007_A,NK cell,__unspecified__,9698
63
+ 007_A,T cell,Memory CD4 T cell,34062
64
+ 007_A,T cell,Memory CD8 T cell,4994
65
+ 007_A,T cell,Naive CD4 T cell,17043
66
+ 007_A,T cell,Naive CD8 T cell,2882
67
+ 007_A,T cell,__unspecified__,595
68
+ 007_A,T cell,gdT,1424
69
+ 009_A,B cell,Effector B cell,11329
70
+ 009_A,B cell,Memory B cell,47886
71
+ 009_A,B cell,Naive B cell,86711
72
+ 009_A,B cell,Plasma cell,2151
73
+ 009_A,B cell,Transitional B cell,12555
74
+ 009_A,DC,ASDC,522
75
+ 009_A,DC,cDC1,943
76
+ 009_A,DC,cDC2,14235
77
+ 009_A,DC,pDC,7587
78
+ 009_A,Erythrocyte,Erythrocyte,1508
79
+ 009_A,ILC,ILC,844
80
+ 009_A,Monocyte,CD14 monocyte,269328
81
+ 009_A,Monocyte,CD16 monocyte,45920
82
+ 009_A,Monocyte,Intermediate monocyte,12671
83
+ 009_A,NK cell,CD56bright NK cell,11055
84
+ 009_A,NK cell,CD56dim NK cell,133881
85
+ 009_A,NK cell,Proliferating NK cell,2825
86
+ 009_A,Platelet,Platelet,7903
87
+ 009_A,Progenitor cell,Progenitor cell,1526
88
+ 009_A,T cell,CD8aa,5737
89
+ 009_A,T cell,DN T cell,2349
90
+ 009_A,T cell,MAIT,46143
91
+ 009_A,T cell,Memory CD4 T cell,321788
92
+ 009_A,T cell,Memory CD8 T cell,183096
93
+ 009_A,T cell,Naive CD4 T cell,378071
94
+ 009_A,T cell,Naive CD8 T cell,121167
95
+ 009_A,T cell,Proliferating T cell,2320
96
+ 009_A,T cell,Treg,39087
97
+ 009_A,T cell,gdT,50587
98
+ 010_A,B cell,Memory B cell,189
99
+ 010_A,B cell,Naive B cell,92305
100
+ 010_A,B cell,Plasma cell,1705
101
+ 010_A,B cell,__unspecified__,32734
102
+ 010_A,DC,cDC1,236
103
+ 010_A,DC,cDC2,3505
104
+ 010_A,ILC,ILC,631
105
+ 010_A,Monocyte,CD14 monocyte,126506
106
+ 010_A,Monocyte,CD16 monocyte,2073
107
+ 010_A,Monocyte,Intermediate monocyte,17340
108
+ 010_A,NK cell,__unspecified__,45982
109
+ 010_A,Platelet,Platelet,484
110
+ 010_A,Progenitor cell,Progenitor cell,632
111
+ 010_A,T cell,DN T cell,6044
112
+ 010_A,T cell,MAIT,32807
113
+ 010_A,T cell,Memory CD4 T cell,221385
114
+ 010_A,T cell,Memory CD8 T cell,42587
115
+ 010_A,T cell,Naive CD4 T cell,1601
116
+ 010_A,T cell,Naive CD8 T cell,39549
117
+ 010_A,T cell,Treg,15778
118
+ 010_A,T cell,__unspecified__,279
119
+ 010_A,T cell,gdT,672
120
+ 053_B,B cell,Memory B cell,3285
121
+ 053_B,B cell,Naive B cell,7718
122
+ 053_B,B cell,Plasma cell,1263
123
+ 053_B,B cell,__unspecified__,2431
124
+ 053_B,DC,__unspecified__,2692
125
+ 053_B,Erythrocyte,Erythrocyte,83
126
+ 053_B,ILC,ILC,132
127
+ 053_B,Monocyte,CD14 monocyte,42690
128
+ 053_B,Monocyte,CD16 monocyte,943
129
+ 053_B,Monocyte,Intermediate monocyte,6320
130
+ 053_B,NK cell,__unspecified__,17721
131
+ 053_B,No label (overlay),No label (overlay),605
132
+ 053_B,Platelet,Platelet,2293
133
+ 053_B,Progenitor cell,Progenitor cell,329
134
+ 053_B,T cell,DN T cell,356
135
+ 053_B,T cell,MAIT,2784
136
+ 053_B,T cell,Memory CD4 T cell,19171
137
+ 053_B,T cell,Memory CD8 T cell,14610
138
+ 053_B,T cell,Naive CD4 T cell,17479
139
+ 053_B,T cell,Naive CD8 T cell,10768
140
+ 053_B,T cell,Treg,2507
141
+ 053_B,T cell,__unspecified__,1935
142
+ 053_B,T cell,gdT,3649
143
+ 058_B,B cell,Memory B cell,457
144
+ 058_B,B cell,Naive B cell,8679
145
+ 058_B,B cell,Plasma cell,1729
146
+ 058_B,B cell,__unspecified__,765
147
+ 058_B,DC,__unspecified__,543
148
+ 058_B,Erythrocyte,Erythrocyte,3907
149
+ 058_B,Monocyte,CD14 monocyte,23648
150
+ 058_B,Monocyte,CD16 monocyte,10586
151
+ 058_B,Monocyte,Intermediate monocyte,1923
152
+ 058_B,NK cell,__unspecified__,226
153
+ 058_B,NKT cell,NKT cell,1807
154
+ 058_B,Neutrophil,Neutrophil,299
155
+ 058_B,Platelet,Platelet,1444
156
+ 058_B,Progenitor cell,Progenitor cell,270
157
+ 058_B,T cell,MAIT,223
158
+ 058_B,T cell,Memory CD4 T cell,3276
159
+ 058_B,T cell,Memory CD8 T cell,6224
160
+ 058_B,T cell,Naive CD4 T cell,26887
161
+ 058_B,T cell,Naive CD8 T cell,2387
162
+ 058_B,T cell,Treg,306
163
+ 058_B,T cell,__unspecified__,1697
164
+ 058_B,T cell,gdT,216
165
+ 061_A,DC,__unspecified__,32388
166
+ 061_A,DC,pDC,13556
167
+ 061_A,Monocyte,CD14 monocyte,619679
168
+ 061_A,Monocyte,CD16 monocyte,113074
169
+ 061_A,NK cell,__unspecified__,335804
170
+ 061_A,Platelet,Platelet,21193
171
+ 061_A,Progenitor cell,Progenitor cell,380525
172
+ 061_A,T cell,DN T cell,90776
173
+ 061_A,T cell,Memory CD4 T cell,984965
174
+ 061_A,T cell,Memory CD8 T cell,453606
175
+ 061_A,T cell,Naive CD4 T cell,873755
176
+ 061_A,T cell,Naive CD8 T cell,198063
177
+ 065_A,B cell,Effector B cell,79323
178
+ 065_A,B cell,Memory B cell,362092
179
+ 065_A,B cell,Naive B cell,668099
180
+ 065_A,B cell,Plasma cell,14161
181
+ 065_A,B cell,Transitional B cell,81410
182
+ 065_A,DC,ASDC,3684
183
+ 065_A,DC,cDC1,7144
184
+ 065_A,DC,cDC2,112192
185
+ 065_A,DC,pDC,53884
186
+ 065_A,Erythrocyte,Erythrocyte,17453
187
+ 065_A,ILC,ILC,5533
188
+ 065_A,Monocyte,CD14 monocyte,2052523
189
+ 065_A,Monocyte,CD16 monocyte,327638
190
+ 065_A,Monocyte,Intermediate monocyte,90293
191
+ 065_A,NK cell,CD56bright NK cell,87100
192
+ 065_A,NK cell,CD56dim NK cell,1008708
193
+ 065_A,NK cell,Proliferating NK cell,19167
194
+ 065_A,Platelet,Platelet,57143
195
+ 065_A,Progenitor cell,Progenitor cell,10431
196
+ 065_A,T cell,CD8aa,19864
197
+ 065_A,T cell,DN T cell,16750
198
+ 065_A,T cell,MAIT,357489
199
+ 065_A,T cell,Memory CD4 T cell,2640499
200
+ 065_A,T cell,Memory CD8 T cell,1470853
201
+ 065_A,T cell,Naive CD4 T cell,2839099
202
+ 065_A,T cell,Naive CD8 T cell,773385
203
+ 065_A,T cell,Proliferating T cell,18957
204
+ 065_A,T cell,Treg,297336
205
+ 065_A,T cell,gdT,297338
206
+ 071_C,B cell,Memory B cell,1119
207
+ 071_C,B cell,Naive B cell,16229
208
+ 071_C,B cell,Plasma cell,830
209
+ 071_C,DC,__unspecified__,355
210
+ 071_C,Monocyte,CD16 monocyte,8049
211
+ 071_C,Monocyte,Intermediate monocyte,16130
212
+ 071_C,T cell,Memory CD8 T cell,4106
213
+ 071_C,T cell,Naive CD4 T cell,32317
214
+ 071_C,T cell,Naive CD8 T cell,13805
215
+ 071_C,T cell,Treg,931
216
+ 071_C,T cell,__unspecified__,8207
217
+ 071_C,T cell,gdT,3749
218
+ 074_A,B cell,Plasma cell,8596
219
+ 074_A,B cell,__unspecified__,44256
220
+ 074_A,DC,__unspecified__,8959
221
+ 074_A,Erythrocyte,Erythrocyte,1867
222
+ 074_A,Mast cell,Mast cell,65
223
+ 074_A,Monocyte,CD14 monocyte,246869
224
+ 074_A,NK cell,__unspecified__,70299
225
+ 074_A,No label (overlay),No label (overlay),59005
226
+ 074_A,Progenitor cell,Progenitor cell,1868
227
+ 074_A,T cell,DN T cell,4557
228
+ 074_A,T cell,MAIT,4541
229
+ 074_A,T cell,__unspecified__,375686
230
+ 074_A,T cell,gdT,9580
231
+ 081_B,B cell,Memory B cell,1341
232
+ 081_B,B cell,Plasma cell,2297
233
+ 081_B,B cell,__unspecified__,3681
234
+ 081_B,DC,__unspecified__,456
235
+ 081_B,Erythrocyte,Erythrocyte,1437
236
+ 081_B,Granulocyte,Granulocyte,530
237
+ 081_B,Monocyte,CD14 monocyte,10339
238
+ 081_B,Monocyte,__unspecified__,1348
239
+ 081_B,NK cell,__unspecified__,6857
240
+ 081_B,Neutrophil,Neutrophil,301
241
+ 081_B,Platelet,Platelet,527
242
+ 081_B,T cell,Memory CD4 T cell,4098
243
+ 081_B,T cell,Memory CD8 T cell,6762
244
+ 081_B,T cell,__unspecified__,4299
245
+ 081_B,T cell,gdT,448
246
+ 093_C,B cell,Memory B cell,4060
247
+ 093_C,B cell,Naive B cell,42212
248
+ 093_C,B cell,Plasma cell,3010
249
+ 093_C,B cell,__unspecified__,1944
250
+ 093_C,DC,__unspecified__,3083
251
+ 093_C,Erythrocyte,Erythrocyte,385
252
+ 093_C,Granulocyte,Granulocyte,25
253
+ 093_C,ILC,ILC,405
254
+ 093_C,Monocyte,CD14 monocyte,66094
255
+ 093_C,Monocyte,CD16 monocyte,4723
256
+ 093_C,NK cell,__unspecified__,51095
257
+ 093_C,NKT cell,NKT cell,687
258
+ 093_C,No label (overlay),No label (overlay),3593
259
+ 093_C,Platelet,Platelet,1784
260
+ 093_C,Progenitor cell,Progenitor cell,959
261
+ 093_C,T cell,MAIT,3961
262
+ 093_C,T cell,Memory CD8 T cell,58110
263
+ 093_C,T cell,Naive CD4 T cell,85573
264
+ 093_C,T cell,Naive CD8 T cell,33590
265
+ 093_C,T cell,Treg,8567
266
+ 093_C,T cell,__unspecified__,43216
267
+ 093_C,T cell,gdT,5144
268
+ 200_A,B cell,Effector B cell,42426
269
+ 200_A,B cell,Memory B cell,128776
270
+ 200_A,B cell,Naive B cell,257356
271
+ 200_A,B cell,Plasma cell,1684
272
+ 200_A,B cell,Transitional B cell,25651
273
+ 200_A,DC,ASDC,650
274
+ 200_A,DC,cDC1,549
275
+ 200_A,DC,cDC2,6306
276
+ 200_A,DC,pDC,11927
277
+ 200_A,Erythrocyte,Erythrocyte,137
278
+ 200_A,ILC,ILC,2047
279
+ 200_A,Monocyte,CD14 monocyte,310977
280
+ 200_A,Monocyte,CD16 monocyte,58778
281
+ 200_A,NK cell,CD56bright NK cell,39172
282
+ 200_A,NK cell,CD56dim NK cell,516240
283
+ 200_A,NK cell,Proliferating NK cell,3500
284
+ 200_A,Platelet,Platelet,5754
285
+ 200_A,Progenitor cell,Progenitor cell,3463
286
+ 200_A,T cell,CD8aa,1968
287
+ 200_A,T cell,DN T cell,10608
288
+ 200_A,T cell,MAIT,59185
289
+ 200_A,T cell,Memory CD4 T cell,718531
290
+ 200_A,T cell,Memory CD8 T cell,397700
291
+ 200_A,T cell,Naive CD4 T cell,770809
292
+ 200_A,T cell,Naive CD8 T cell,175627
293
+ 200_A,T cell,Proliferating T cell,2488
294
+ 200_A,T cell,Treg,133734
295
+ 200_A,T cell,gdT,72471
296
+ 202_B,B cell,Memory B cell,21439
297
+ 202_B,B cell,Naive B cell,19293
298
+ 202_B,B cell,Plasma cell,2886
299
+ 202_B,DC,__unspecified__,991
300
+ 202_B,Granulocyte,Granulocyte,776
301
+ 202_B,Monocyte,CD14 monocyte,85068
302
+ 202_B,Monocyte,CD16 monocyte,29942
303
+ 202_B,Monocyte,Intermediate monocyte,358
304
+ 202_B,NK cell,__unspecified__,3825
305
+ 202_B,No label (overlay),No label (overlay),174
306
+ 202_B,Platelet,Platelet,3370
307
+ 202_B,T cell,DN T cell,5164
308
+ 202_B,T cell,MAIT,6305
309
+ 202_B,T cell,Memory CD4 T cell,94519
310
+ 202_B,T cell,Memory CD8 T cell,42346
311
+ 202_B,T cell,Naive CD4 T cell,31734
312
+ 202_B,T cell,Naive CD8 T cell,13910
313
+ 202_B,T cell,Treg,3041
314
+ 202_B,T cell,__unspecified__,1247
315
+ 202_B,T cell,gdT,5693
316
+ 203_B,B cell,Memory B cell,27172
317
+ 203_B,B cell,Naive B cell,21672
318
+ 203_B,B cell,Plasma cell,4430
319
+ 203_B,DC,__unspecified__,4374
320
+ 203_B,Monocyte,CD14 monocyte,51039
321
+ 203_B,Monocyte,Intermediate monocyte,13503
322
+ 203_B,NK cell,__unspecified__,81409
323
+ 203_B,No label (overlay),No label (overlay),1957
324
+ 203_B,Platelet,Platelet,3013
325
+ 203_B,T cell,Naive CD8 T cell,26375
326
+ 203_B,T cell,__unspecified__,227090
327
+ 204_B,B cell,Plasma cell,619
328
+ 204_B,B cell,__unspecified__,159199
329
+ 204_B,DC,__unspecified__,5011
330
+ 204_B,Monocyte,__unspecified__,36346
331
+ 204_B,No label (overlay),No label (overlay),24655
332
+ 204_B,Progenitor cell,Progenitor cell,786054
333
+ 300b_A,B cell,Effector B cell,191
334
+ 300b_A,B cell,Memory B cell,674
335
+ 300b_A,B cell,Naive B cell,1094
336
+ 300b_A,B cell,Plasma cell,174
337
+ 300b_A,B cell,Transitional B cell,83
338
+ 300b_A,DC,ASDC,9
339
+ 300b_A,DC,cDC1,42
340
+ 300b_A,DC,cDC2,262
341
+ 300b_A,DC,pDC,17
342
+ 300b_A,Erythrocyte,Erythrocyte,273
343
+ 300b_A,ILC,ILC,11
344
+ 300b_A,Monocyte,CD14 monocyte,2835
345
+ 300b_A,Monocyte,CD16 monocyte,437
346
+ 300b_A,Monocyte,Intermediate monocyte,1513
347
+ 300b_A,NK cell,CD56bright NK cell,142
348
+ 300b_A,NK cell,CD56dim NK cell,1374
349
+ 300b_A,NK cell,Proliferating NK cell,188
350
+ 300b_A,Platelet,Platelet,71
351
+ 300b_A,Progenitor cell,Progenitor cell,60
352
+ 300b_A,T cell,CD8aa,18
353
+ 300b_A,T cell,DN T cell,95
354
+ 300b_A,T cell,MAIT,587
355
+ 300b_A,T cell,Memory CD4 T cell,9374
356
+ 300b_A,T cell,Memory CD8 T cell,2178
357
+ 300b_A,T cell,Naive CD4 T cell,5366
358
+ 300b_A,T cell,Naive CD8 T cell,3628
359
+ 300b_A,T cell,Proliferating T cell,1997
360
+ 300b_A,T cell,Treg,799
361
+ 300b_A,T cell,gdT,444
362
+ 300b_A,__unknown__,__unspecified__,115
363
+ 301_A,B cell,Effector B cell,2919
364
+ 301_A,B cell,Memory B cell,8381
365
+ 301_A,B cell,Naive B cell,9589
366
+ 301_A,B cell,Plasma cell,362
367
+ 301_A,B cell,Transitional B cell,1137
368
+ 301_A,DC,cDC1,1
369
+ 301_A,DC,cDC2,24
370
+ 301_A,Erythrocyte,Erythrocyte,1
371
+ 301_A,ILC,ILC,127
372
+ 301_A,Monocyte,CD14 monocyte,710
373
+ 301_A,Monocyte,CD16 monocyte,331
374
+ 301_A,Monocyte,Intermediate monocyte,27
375
+ 301_A,NK cell,CD56dim NK cell,87
376
+ 301_A,NK cell,Proliferating NK cell,51
377
+ 301_A,Platelet,Platelet,13
378
+ 301_A,Progenitor cell,Progenitor cell,51
379
+ 301_A,T cell,CD8aa,2
380
+ 301_A,T cell,DN T cell,5
381
+ 301_A,T cell,MAIT,10
382
+ 301_A,T cell,Memory CD4 T cell,433
383
+ 301_A,T cell,Memory CD8 T cell,124
384
+ 301_A,T cell,Naive CD4 T cell,334
385
+ 301_A,T cell,Naive CD8 T cell,177
386
+ 301_A,T cell,Proliferating T cell,2
387
+ 301_A,T cell,Treg,72
388
+ 301_A,T cell,gdT,49
389
+ 301_A,__unknown__,__unspecified__,18
390
+ 302_A,B cell,Effector B cell,1002
391
+ 302_A,B cell,Memory B cell,1375
392
+ 302_A,B cell,Naive B cell,2665
393
+ 302_A,B cell,Plasma cell,41
394
+ 302_A,B cell,Transitional B cell,542
395
+ 302_A,DC,ASDC,18
396
+ 302_A,DC,cDC1,92
397
+ 302_A,DC,cDC2,596
398
+ 302_A,DC,pDC,154
399
+ 302_A,Erythrocyte,Erythrocyte,163
400
+ 302_A,ILC,ILC,92
401
+ 302_A,Monocyte,CD14 monocyte,4323
402
+ 302_A,Monocyte,CD16 monocyte,364
403
+ 302_A,Monocyte,Intermediate monocyte,5769
404
+ 302_A,NK cell,CD56bright NK cell,568
405
+ 302_A,NK cell,CD56dim NK cell,3373
406
+ 302_A,NK cell,Proliferating NK cell,637
407
+ 302_A,Platelet,Platelet,25
408
+ 302_A,Progenitor cell,Progenitor cell,497
409
+ 302_A,T cell,CD8aa,287
410
+ 302_A,T cell,DN T cell,6033
411
+ 302_A,T cell,MAIT,1959
412
+ 302_A,T cell,Memory CD4 T cell,7529
413
+ 302_A,T cell,Memory CD8 T cell,5752
414
+ 302_A,T cell,Naive CD4 T cell,12441
415
+ 302_A,T cell,Naive CD8 T cell,5590
416
+ 302_A,T cell,Proliferating T cell,21
417
+ 302_A,T cell,Treg,1208
418
+ 302_A,T cell,gdT,1626
419
+ 302_A,__unknown__,__unspecified__,10
420
+ 304_A,B cell,Memory B cell,326661
421
+ 304_A,B cell,Naive B cell,625239
422
+ 304_A,B cell,Plasma cell,5876
423
+ 304_A,DC,cDC2,112944
424
+ 304_A,DC,pDC,18942
425
+ 304_A,ILC,ILC,8356
426
+ 304_A,Monocyte,CD14 monocyte,1582568
427
+ 304_A,Monocyte,CD16 monocyte,232755
428
+ 304_A,NK cell,CD56bright NK cell,125729
429
+ 304_A,NK cell,CD56dim NK cell,512565
430
+ 304_A,Progenitor cell,Progenitor cell,17322
431
+ 304_A,T cell,MAIT,322923
432
+ 304_A,T cell,Memory CD4 T cell,2376445
433
+ 304_A,T cell,Memory CD8 T cell,757585
434
+ 304_A,T cell,Naive CD4 T cell,1725983
435
+ 304_A,T cell,Naive CD8 T cell,619816
436
+ 304_A,T cell,Treg,168248
437
+ 304_A,__unknown__,__unspecified__,158017
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_datasets.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ dataset_prefix,short_name,accession,enrichment,dataset_id,platform,assay,n_cells,n_samples,n_donors,train_cells,val_cells,test_cells,in_vitro_cells,conditions
2
+ 065_A,Sound Life,GSE271896,PBMC,065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,10x,10x 3' v3,13789548,868,96,11138182,1445231,1206135,0,Healthy 13789548
3
+ 304_A,Parse 10M cytokines,Parse Biosciences,PBMC,304_A_Parse_10M_PBMC_12donor_90cytokines,Parse,Parse,9697974,1092,12,7711697,1054708,931569,9697974,Healthy 9697974
4
+ 061_A,RA at-risk cohort,GSE274680,PBMC,061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,10x,10x 3' (hashed),4117384,239,90,3253619,438733,425032,0,Healthy 2113388; ACPA+ at risk of RA 1792129; RA 211867
5
+ 200_A,Immunobiology of Aging,GSE275067,PBMC,200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,10x,10x Flex,3758514,234,234,3014412,402041,342061,0,Healthy 3758514
6
+ 009_A,Human Immune Health Atlas,AIFI HIHA,PBMC,009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,10x,10x 3' v3,1821725,108,108,1443923,191363,186439,0,Healthy 1821725
7
+ 006_A,AIDA,CELLxGENE ced320a1,PBMC,006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,10x,10x 5' v2,1265624,625,625,991970,138032,135622,0,Healthy 1265624
8
+ 001_A,Perez SLE,CELLxGENE 436154da,PBMC,001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,10x,10x 3' v2,1263676,1391,261,996252,131345,136079,0,SLE 777258; Healthy 486418
9
+ 005_A,OneK1K,CELLxGENE dde06e0f,PBMC,005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,10x,10x 3' v2,1248980,981,981,995251,127741,125988,0,Healthy 1248980
10
+ 204_B,Circulating HSPC (aging/MDS),CELLxGENE,HSPC-enriched,204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,10x,10x 3' v3,1011884,239,206,808473,82481,120930,0,Healthy 605236; MDS 176233; MDS/MPN 130268; Cytopenia 100147
11
+ 074_A,COMBAT,CELLxGENE COMBAT,PBMC,074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,10x,10x 5' v1,836148,140,124,657262,92959,85927,0,COVID-19 724710; Healthy 92205; Influenza 19233
12
+ 010_A,ScaleBio PBMC,CELLxGENE 4a9fd4d7,PBMC,010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,ScaleBio,ScaleBio,685024,1,1,685024,0,0,0,Healthy 685024
13
+ 203_B,Indonesia diversity,CELLxGENE 665714af,PBMC,203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,10x,10x 5' v2,462034,199,199,363636,47577,50821,0,Healthy 462034
14
+ 093_C,SARS-CoV-2 local and systemic,CELLxGENE,PBMC,093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,10x,10x 5' v1,422220,80,75,336885,48503,36832,0,Healthy 173684; COVID-19 151312; Post-COVID-19 97224
15
+ 202_B,COVID-19 time course,GSE161918,PBMC,202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,10x,10x 5' v1,372081,92,46,281960,60564,29557,0,COVID-19 277957; Healthy 94124
16
+ 053_B,CITE-seq PBMC,CELLxGENE b0cf0afa,PBMC,053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,10x,10x 3' v3,161764,24,8,114082,25871,21811,0,Healthy 161764
17
+ 007_A,Miao RA,CELLxGENE e1a9ca56,PBMC,007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,10x,10x 3' v3,108717,36,36,85902,12841,9974,0,Healthy 60080; RA 48637
18
+ 071_C,JDM CITE-seq,CELLxGENE,PBMC,071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,10x,10x 3' v3,105827,106,20,81787,15216,8824,0,JDM 82666; Healthy 23161
19
+ 058_B,COVID-19 immunodeficiency,CELLxGENE eb735cc9,PBMC,058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,10x,10x 5' v1,97499,22,22,75412,11634,10453,0,COVID-19 97499
20
+ 302_A,IL-36 stimulation,GSE314010,PBMC,302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,10x,10x (version n.r.),64752,5,5,37807,14473,12472,64752,Healthy 64752
21
+ 081_B,SARS-CoV-2 Seq-Well,CELLxGENE,PBMC,081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,Seq-Well,Seq-Well,44721,13,13,33040,6545,5136,0,COVID-19 28094; Healthy 16627
22
+ 300b_A,DRESS,GSE132802,PBMC,300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,10x,10x v2 (3'/5'),34051,7,2,19816,7660,6575,11037,DRESS 25272; Healthy 8779
23
+ 301_A,SLE B cells,GSE163121,B-cell enriched,301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,10x,10x 3' v2,25037,5,5,14988,5514,4535,0,SLE 15402; Healthy 9635
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_samples.csv ADDED
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