Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_cellgroups.csv +0 -0
- paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_celltypes.csv +437 -0
- paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_datasets.csv +23 -0
- paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_samples.csv +0 -0
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_cellgroups.csv
ADDED
|
The diff for this file is too large to render.
See raw diff
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paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_celltypes.csv
ADDED
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@@ -0,0 +1,437 @@
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|
| 1 |
+
dataset_prefix,celltype_l1,celltype_l2,n_cells
|
| 2 |
+
001_A,B cell,Plasma cell,6644
|
| 3 |
+
001_A,B cell,__unspecified__,151570
|
| 4 |
+
001_A,DC,__unspecified__,18203
|
| 5 |
+
001_A,Monocyte,CD14 monocyte,356229
|
| 6 |
+
001_A,NK cell,__unspecified__,92554
|
| 7 |
+
001_A,No label (overlay),No label (overlay),8265
|
| 8 |
+
001_A,Progenitor cell,Progenitor cell,807
|
| 9 |
+
001_A,T cell,__unspecified__,629404
|
| 10 |
+
005_A,B cell,Memory B cell,30234
|
| 11 |
+
005_A,B cell,Naive B cell,65702
|
| 12 |
+
005_A,B cell,Plasma cell,5651
|
| 13 |
+
005_A,B cell,Transitional B cell,29889
|
| 14 |
+
005_A,DC,__unspecified__,4751
|
| 15 |
+
005_A,Erythrocyte,Erythrocyte,290
|
| 16 |
+
005_A,ILC,ILC,444
|
| 17 |
+
005_A,Monocyte,CD14 monocyte,36130
|
| 18 |
+
005_A,Monocyte,CD16 monocyte,7006
|
| 19 |
+
005_A,Monocyte,Intermediate monocyte,15743
|
| 20 |
+
005_A,NK cell,__unspecified__,164933
|
| 21 |
+
005_A,No label (overlay),No label (overlay),131
|
| 22 |
+
005_A,Platelet,Platelet,1810
|
| 23 |
+
005_A,Progenitor cell,Progenitor cell,1812
|
| 24 |
+
005_A,T cell,DN T cell,1824
|
| 25 |
+
005_A,T cell,MAIT,8835
|
| 26 |
+
005_A,T cell,Memory CD4 T cell,320261
|
| 27 |
+
005_A,T cell,Memory CD8 T cell,177460
|
| 28 |
+
005_A,T cell,Naive CD4 T cell,259012
|
| 29 |
+
005_A,T cell,Naive CD8 T cell,52538
|
| 30 |
+
005_A,T cell,Treg,26531
|
| 31 |
+
005_A,T cell,__unspecified__,19071
|
| 32 |
+
005_A,T cell,gdT,18922
|
| 33 |
+
006_A,B cell,Memory B cell,35114
|
| 34 |
+
006_A,B cell,Naive B cell,36778
|
| 35 |
+
006_A,B cell,Plasma cell,5468
|
| 36 |
+
006_A,B cell,__unspecified__,13994
|
| 37 |
+
006_A,DC,__unspecified__,894
|
| 38 |
+
006_A,DC,cDC1,554
|
| 39 |
+
006_A,DC,cDC2,13207
|
| 40 |
+
006_A,ILC,ILC,707
|
| 41 |
+
006_A,Monocyte,CD14 monocyte,202124
|
| 42 |
+
006_A,Monocyte,CD16 monocyte,157807
|
| 43 |
+
006_A,Monocyte,Intermediate monocyte,46628
|
| 44 |
+
006_A,NK cell,__unspecified__,23234
|
| 45 |
+
006_A,No label (overlay),No label (overlay),26020
|
| 46 |
+
006_A,Platelet,Platelet,14799
|
| 47 |
+
006_A,Progenitor cell,Progenitor cell,135
|
| 48 |
+
006_A,T cell,DN T cell,489
|
| 49 |
+
006_A,T cell,MAIT,23001
|
| 50 |
+
006_A,T cell,Memory CD4 T cell,135016
|
| 51 |
+
006_A,T cell,Memory CD8 T cell,74666
|
| 52 |
+
006_A,T cell,Naive CD4 T cell,157616
|
| 53 |
+
006_A,T cell,Naive CD8 T cell,89029
|
| 54 |
+
006_A,T cell,Treg,15497
|
| 55 |
+
006_A,T cell,__unspecified__,162152
|
| 56 |
+
006_A,T cell,gdT,30695
|
| 57 |
+
007_A,B cell,Memory B cell,6177
|
| 58 |
+
007_A,B cell,Naive B cell,6760
|
| 59 |
+
007_A,B cell,Plasma cell,1473
|
| 60 |
+
007_A,DC,__unspecified__,6047
|
| 61 |
+
007_A,Monocyte,CD14 monocyte,17562
|
| 62 |
+
007_A,NK cell,__unspecified__,9698
|
| 63 |
+
007_A,T cell,Memory CD4 T cell,34062
|
| 64 |
+
007_A,T cell,Memory CD8 T cell,4994
|
| 65 |
+
007_A,T cell,Naive CD4 T cell,17043
|
| 66 |
+
007_A,T cell,Naive CD8 T cell,2882
|
| 67 |
+
007_A,T cell,__unspecified__,595
|
| 68 |
+
007_A,T cell,gdT,1424
|
| 69 |
+
009_A,B cell,Effector B cell,11329
|
| 70 |
+
009_A,B cell,Memory B cell,47886
|
| 71 |
+
009_A,B cell,Naive B cell,86711
|
| 72 |
+
009_A,B cell,Plasma cell,2151
|
| 73 |
+
009_A,B cell,Transitional B cell,12555
|
| 74 |
+
009_A,DC,ASDC,522
|
| 75 |
+
009_A,DC,cDC1,943
|
| 76 |
+
009_A,DC,cDC2,14235
|
| 77 |
+
009_A,DC,pDC,7587
|
| 78 |
+
009_A,Erythrocyte,Erythrocyte,1508
|
| 79 |
+
009_A,ILC,ILC,844
|
| 80 |
+
009_A,Monocyte,CD14 monocyte,269328
|
| 81 |
+
009_A,Monocyte,CD16 monocyte,45920
|
| 82 |
+
009_A,Monocyte,Intermediate monocyte,12671
|
| 83 |
+
009_A,NK cell,CD56bright NK cell,11055
|
| 84 |
+
009_A,NK cell,CD56dim NK cell,133881
|
| 85 |
+
009_A,NK cell,Proliferating NK cell,2825
|
| 86 |
+
009_A,Platelet,Platelet,7903
|
| 87 |
+
009_A,Progenitor cell,Progenitor cell,1526
|
| 88 |
+
009_A,T cell,CD8aa,5737
|
| 89 |
+
009_A,T cell,DN T cell,2349
|
| 90 |
+
009_A,T cell,MAIT,46143
|
| 91 |
+
009_A,T cell,Memory CD4 T cell,321788
|
| 92 |
+
009_A,T cell,Memory CD8 T cell,183096
|
| 93 |
+
009_A,T cell,Naive CD4 T cell,378071
|
| 94 |
+
009_A,T cell,Naive CD8 T cell,121167
|
| 95 |
+
009_A,T cell,Proliferating T cell,2320
|
| 96 |
+
009_A,T cell,Treg,39087
|
| 97 |
+
009_A,T cell,gdT,50587
|
| 98 |
+
010_A,B cell,Memory B cell,189
|
| 99 |
+
010_A,B cell,Naive B cell,92305
|
| 100 |
+
010_A,B cell,Plasma cell,1705
|
| 101 |
+
010_A,B cell,__unspecified__,32734
|
| 102 |
+
010_A,DC,cDC1,236
|
| 103 |
+
010_A,DC,cDC2,3505
|
| 104 |
+
010_A,ILC,ILC,631
|
| 105 |
+
010_A,Monocyte,CD14 monocyte,126506
|
| 106 |
+
010_A,Monocyte,CD16 monocyte,2073
|
| 107 |
+
010_A,Monocyte,Intermediate monocyte,17340
|
| 108 |
+
010_A,NK cell,__unspecified__,45982
|
| 109 |
+
010_A,Platelet,Platelet,484
|
| 110 |
+
010_A,Progenitor cell,Progenitor cell,632
|
| 111 |
+
010_A,T cell,DN T cell,6044
|
| 112 |
+
010_A,T cell,MAIT,32807
|
| 113 |
+
010_A,T cell,Memory CD4 T cell,221385
|
| 114 |
+
010_A,T cell,Memory CD8 T cell,42587
|
| 115 |
+
010_A,T cell,Naive CD4 T cell,1601
|
| 116 |
+
010_A,T cell,Naive CD8 T cell,39549
|
| 117 |
+
010_A,T cell,Treg,15778
|
| 118 |
+
010_A,T cell,__unspecified__,279
|
| 119 |
+
010_A,T cell,gdT,672
|
| 120 |
+
053_B,B cell,Memory B cell,3285
|
| 121 |
+
053_B,B cell,Naive B cell,7718
|
| 122 |
+
053_B,B cell,Plasma cell,1263
|
| 123 |
+
053_B,B cell,__unspecified__,2431
|
| 124 |
+
053_B,DC,__unspecified__,2692
|
| 125 |
+
053_B,Erythrocyte,Erythrocyte,83
|
| 126 |
+
053_B,ILC,ILC,132
|
| 127 |
+
053_B,Monocyte,CD14 monocyte,42690
|
| 128 |
+
053_B,Monocyte,CD16 monocyte,943
|
| 129 |
+
053_B,Monocyte,Intermediate monocyte,6320
|
| 130 |
+
053_B,NK cell,__unspecified__,17721
|
| 131 |
+
053_B,No label (overlay),No label (overlay),605
|
| 132 |
+
053_B,Platelet,Platelet,2293
|
| 133 |
+
053_B,Progenitor cell,Progenitor cell,329
|
| 134 |
+
053_B,T cell,DN T cell,356
|
| 135 |
+
053_B,T cell,MAIT,2784
|
| 136 |
+
053_B,T cell,Memory CD4 T cell,19171
|
| 137 |
+
053_B,T cell,Memory CD8 T cell,14610
|
| 138 |
+
053_B,T cell,Naive CD4 T cell,17479
|
| 139 |
+
053_B,T cell,Naive CD8 T cell,10768
|
| 140 |
+
053_B,T cell,Treg,2507
|
| 141 |
+
053_B,T cell,__unspecified__,1935
|
| 142 |
+
053_B,T cell,gdT,3649
|
| 143 |
+
058_B,B cell,Memory B cell,457
|
| 144 |
+
058_B,B cell,Naive B cell,8679
|
| 145 |
+
058_B,B cell,Plasma cell,1729
|
| 146 |
+
058_B,B cell,__unspecified__,765
|
| 147 |
+
058_B,DC,__unspecified__,543
|
| 148 |
+
058_B,Erythrocyte,Erythrocyte,3907
|
| 149 |
+
058_B,Monocyte,CD14 monocyte,23648
|
| 150 |
+
058_B,Monocyte,CD16 monocyte,10586
|
| 151 |
+
058_B,Monocyte,Intermediate monocyte,1923
|
| 152 |
+
058_B,NK cell,__unspecified__,226
|
| 153 |
+
058_B,NKT cell,NKT cell,1807
|
| 154 |
+
058_B,Neutrophil,Neutrophil,299
|
| 155 |
+
058_B,Platelet,Platelet,1444
|
| 156 |
+
058_B,Progenitor cell,Progenitor cell,270
|
| 157 |
+
058_B,T cell,MAIT,223
|
| 158 |
+
058_B,T cell,Memory CD4 T cell,3276
|
| 159 |
+
058_B,T cell,Memory CD8 T cell,6224
|
| 160 |
+
058_B,T cell,Naive CD4 T cell,26887
|
| 161 |
+
058_B,T cell,Naive CD8 T cell,2387
|
| 162 |
+
058_B,T cell,Treg,306
|
| 163 |
+
058_B,T cell,__unspecified__,1697
|
| 164 |
+
058_B,T cell,gdT,216
|
| 165 |
+
061_A,DC,__unspecified__,32388
|
| 166 |
+
061_A,DC,pDC,13556
|
| 167 |
+
061_A,Monocyte,CD14 monocyte,619679
|
| 168 |
+
061_A,Monocyte,CD16 monocyte,113074
|
| 169 |
+
061_A,NK cell,__unspecified__,335804
|
| 170 |
+
061_A,Platelet,Platelet,21193
|
| 171 |
+
061_A,Progenitor cell,Progenitor cell,380525
|
| 172 |
+
061_A,T cell,DN T cell,90776
|
| 173 |
+
061_A,T cell,Memory CD4 T cell,984965
|
| 174 |
+
061_A,T cell,Memory CD8 T cell,453606
|
| 175 |
+
061_A,T cell,Naive CD4 T cell,873755
|
| 176 |
+
061_A,T cell,Naive CD8 T cell,198063
|
| 177 |
+
065_A,B cell,Effector B cell,79323
|
| 178 |
+
065_A,B cell,Memory B cell,362092
|
| 179 |
+
065_A,B cell,Naive B cell,668099
|
| 180 |
+
065_A,B cell,Plasma cell,14161
|
| 181 |
+
065_A,B cell,Transitional B cell,81410
|
| 182 |
+
065_A,DC,ASDC,3684
|
| 183 |
+
065_A,DC,cDC1,7144
|
| 184 |
+
065_A,DC,cDC2,112192
|
| 185 |
+
065_A,DC,pDC,53884
|
| 186 |
+
065_A,Erythrocyte,Erythrocyte,17453
|
| 187 |
+
065_A,ILC,ILC,5533
|
| 188 |
+
065_A,Monocyte,CD14 monocyte,2052523
|
| 189 |
+
065_A,Monocyte,CD16 monocyte,327638
|
| 190 |
+
065_A,Monocyte,Intermediate monocyte,90293
|
| 191 |
+
065_A,NK cell,CD56bright NK cell,87100
|
| 192 |
+
065_A,NK cell,CD56dim NK cell,1008708
|
| 193 |
+
065_A,NK cell,Proliferating NK cell,19167
|
| 194 |
+
065_A,Platelet,Platelet,57143
|
| 195 |
+
065_A,Progenitor cell,Progenitor cell,10431
|
| 196 |
+
065_A,T cell,CD8aa,19864
|
| 197 |
+
065_A,T cell,DN T cell,16750
|
| 198 |
+
065_A,T cell,MAIT,357489
|
| 199 |
+
065_A,T cell,Memory CD4 T cell,2640499
|
| 200 |
+
065_A,T cell,Memory CD8 T cell,1470853
|
| 201 |
+
065_A,T cell,Naive CD4 T cell,2839099
|
| 202 |
+
065_A,T cell,Naive CD8 T cell,773385
|
| 203 |
+
065_A,T cell,Proliferating T cell,18957
|
| 204 |
+
065_A,T cell,Treg,297336
|
| 205 |
+
065_A,T cell,gdT,297338
|
| 206 |
+
071_C,B cell,Memory B cell,1119
|
| 207 |
+
071_C,B cell,Naive B cell,16229
|
| 208 |
+
071_C,B cell,Plasma cell,830
|
| 209 |
+
071_C,DC,__unspecified__,355
|
| 210 |
+
071_C,Monocyte,CD16 monocyte,8049
|
| 211 |
+
071_C,Monocyte,Intermediate monocyte,16130
|
| 212 |
+
071_C,T cell,Memory CD8 T cell,4106
|
| 213 |
+
071_C,T cell,Naive CD4 T cell,32317
|
| 214 |
+
071_C,T cell,Naive CD8 T cell,13805
|
| 215 |
+
071_C,T cell,Treg,931
|
| 216 |
+
071_C,T cell,__unspecified__,8207
|
| 217 |
+
071_C,T cell,gdT,3749
|
| 218 |
+
074_A,B cell,Plasma cell,8596
|
| 219 |
+
074_A,B cell,__unspecified__,44256
|
| 220 |
+
074_A,DC,__unspecified__,8959
|
| 221 |
+
074_A,Erythrocyte,Erythrocyte,1867
|
| 222 |
+
074_A,Mast cell,Mast cell,65
|
| 223 |
+
074_A,Monocyte,CD14 monocyte,246869
|
| 224 |
+
074_A,NK cell,__unspecified__,70299
|
| 225 |
+
074_A,No label (overlay),No label (overlay),59005
|
| 226 |
+
074_A,Progenitor cell,Progenitor cell,1868
|
| 227 |
+
074_A,T cell,DN T cell,4557
|
| 228 |
+
074_A,T cell,MAIT,4541
|
| 229 |
+
074_A,T cell,__unspecified__,375686
|
| 230 |
+
074_A,T cell,gdT,9580
|
| 231 |
+
081_B,B cell,Memory B cell,1341
|
| 232 |
+
081_B,B cell,Plasma cell,2297
|
| 233 |
+
081_B,B cell,__unspecified__,3681
|
| 234 |
+
081_B,DC,__unspecified__,456
|
| 235 |
+
081_B,Erythrocyte,Erythrocyte,1437
|
| 236 |
+
081_B,Granulocyte,Granulocyte,530
|
| 237 |
+
081_B,Monocyte,CD14 monocyte,10339
|
| 238 |
+
081_B,Monocyte,__unspecified__,1348
|
| 239 |
+
081_B,NK cell,__unspecified__,6857
|
| 240 |
+
081_B,Neutrophil,Neutrophil,301
|
| 241 |
+
081_B,Platelet,Platelet,527
|
| 242 |
+
081_B,T cell,Memory CD4 T cell,4098
|
| 243 |
+
081_B,T cell,Memory CD8 T cell,6762
|
| 244 |
+
081_B,T cell,__unspecified__,4299
|
| 245 |
+
081_B,T cell,gdT,448
|
| 246 |
+
093_C,B cell,Memory B cell,4060
|
| 247 |
+
093_C,B cell,Naive B cell,42212
|
| 248 |
+
093_C,B cell,Plasma cell,3010
|
| 249 |
+
093_C,B cell,__unspecified__,1944
|
| 250 |
+
093_C,DC,__unspecified__,3083
|
| 251 |
+
093_C,Erythrocyte,Erythrocyte,385
|
| 252 |
+
093_C,Granulocyte,Granulocyte,25
|
| 253 |
+
093_C,ILC,ILC,405
|
| 254 |
+
093_C,Monocyte,CD14 monocyte,66094
|
| 255 |
+
093_C,Monocyte,CD16 monocyte,4723
|
| 256 |
+
093_C,NK cell,__unspecified__,51095
|
| 257 |
+
093_C,NKT cell,NKT cell,687
|
| 258 |
+
093_C,No label (overlay),No label (overlay),3593
|
| 259 |
+
093_C,Platelet,Platelet,1784
|
| 260 |
+
093_C,Progenitor cell,Progenitor cell,959
|
| 261 |
+
093_C,T cell,MAIT,3961
|
| 262 |
+
093_C,T cell,Memory CD8 T cell,58110
|
| 263 |
+
093_C,T cell,Naive CD4 T cell,85573
|
| 264 |
+
093_C,T cell,Naive CD8 T cell,33590
|
| 265 |
+
093_C,T cell,Treg,8567
|
| 266 |
+
093_C,T cell,__unspecified__,43216
|
| 267 |
+
093_C,T cell,gdT,5144
|
| 268 |
+
200_A,B cell,Effector B cell,42426
|
| 269 |
+
200_A,B cell,Memory B cell,128776
|
| 270 |
+
200_A,B cell,Naive B cell,257356
|
| 271 |
+
200_A,B cell,Plasma cell,1684
|
| 272 |
+
200_A,B cell,Transitional B cell,25651
|
| 273 |
+
200_A,DC,ASDC,650
|
| 274 |
+
200_A,DC,cDC1,549
|
| 275 |
+
200_A,DC,cDC2,6306
|
| 276 |
+
200_A,DC,pDC,11927
|
| 277 |
+
200_A,Erythrocyte,Erythrocyte,137
|
| 278 |
+
200_A,ILC,ILC,2047
|
| 279 |
+
200_A,Monocyte,CD14 monocyte,310977
|
| 280 |
+
200_A,Monocyte,CD16 monocyte,58778
|
| 281 |
+
200_A,NK cell,CD56bright NK cell,39172
|
| 282 |
+
200_A,NK cell,CD56dim NK cell,516240
|
| 283 |
+
200_A,NK cell,Proliferating NK cell,3500
|
| 284 |
+
200_A,Platelet,Platelet,5754
|
| 285 |
+
200_A,Progenitor cell,Progenitor cell,3463
|
| 286 |
+
200_A,T cell,CD8aa,1968
|
| 287 |
+
200_A,T cell,DN T cell,10608
|
| 288 |
+
200_A,T cell,MAIT,59185
|
| 289 |
+
200_A,T cell,Memory CD4 T cell,718531
|
| 290 |
+
200_A,T cell,Memory CD8 T cell,397700
|
| 291 |
+
200_A,T cell,Naive CD4 T cell,770809
|
| 292 |
+
200_A,T cell,Naive CD8 T cell,175627
|
| 293 |
+
200_A,T cell,Proliferating T cell,2488
|
| 294 |
+
200_A,T cell,Treg,133734
|
| 295 |
+
200_A,T cell,gdT,72471
|
| 296 |
+
202_B,B cell,Memory B cell,21439
|
| 297 |
+
202_B,B cell,Naive B cell,19293
|
| 298 |
+
202_B,B cell,Plasma cell,2886
|
| 299 |
+
202_B,DC,__unspecified__,991
|
| 300 |
+
202_B,Granulocyte,Granulocyte,776
|
| 301 |
+
202_B,Monocyte,CD14 monocyte,85068
|
| 302 |
+
202_B,Monocyte,CD16 monocyte,29942
|
| 303 |
+
202_B,Monocyte,Intermediate monocyte,358
|
| 304 |
+
202_B,NK cell,__unspecified__,3825
|
| 305 |
+
202_B,No label (overlay),No label (overlay),174
|
| 306 |
+
202_B,Platelet,Platelet,3370
|
| 307 |
+
202_B,T cell,DN T cell,5164
|
| 308 |
+
202_B,T cell,MAIT,6305
|
| 309 |
+
202_B,T cell,Memory CD4 T cell,94519
|
| 310 |
+
202_B,T cell,Memory CD8 T cell,42346
|
| 311 |
+
202_B,T cell,Naive CD4 T cell,31734
|
| 312 |
+
202_B,T cell,Naive CD8 T cell,13910
|
| 313 |
+
202_B,T cell,Treg,3041
|
| 314 |
+
202_B,T cell,__unspecified__,1247
|
| 315 |
+
202_B,T cell,gdT,5693
|
| 316 |
+
203_B,B cell,Memory B cell,27172
|
| 317 |
+
203_B,B cell,Naive B cell,21672
|
| 318 |
+
203_B,B cell,Plasma cell,4430
|
| 319 |
+
203_B,DC,__unspecified__,4374
|
| 320 |
+
203_B,Monocyte,CD14 monocyte,51039
|
| 321 |
+
203_B,Monocyte,Intermediate monocyte,13503
|
| 322 |
+
203_B,NK cell,__unspecified__,81409
|
| 323 |
+
203_B,No label (overlay),No label (overlay),1957
|
| 324 |
+
203_B,Platelet,Platelet,3013
|
| 325 |
+
203_B,T cell,Naive CD8 T cell,26375
|
| 326 |
+
203_B,T cell,__unspecified__,227090
|
| 327 |
+
204_B,B cell,Plasma cell,619
|
| 328 |
+
204_B,B cell,__unspecified__,159199
|
| 329 |
+
204_B,DC,__unspecified__,5011
|
| 330 |
+
204_B,Monocyte,__unspecified__,36346
|
| 331 |
+
204_B,No label (overlay),No label (overlay),24655
|
| 332 |
+
204_B,Progenitor cell,Progenitor cell,786054
|
| 333 |
+
300b_A,B cell,Effector B cell,191
|
| 334 |
+
300b_A,B cell,Memory B cell,674
|
| 335 |
+
300b_A,B cell,Naive B cell,1094
|
| 336 |
+
300b_A,B cell,Plasma cell,174
|
| 337 |
+
300b_A,B cell,Transitional B cell,83
|
| 338 |
+
300b_A,DC,ASDC,9
|
| 339 |
+
300b_A,DC,cDC1,42
|
| 340 |
+
300b_A,DC,cDC2,262
|
| 341 |
+
300b_A,DC,pDC,17
|
| 342 |
+
300b_A,Erythrocyte,Erythrocyte,273
|
| 343 |
+
300b_A,ILC,ILC,11
|
| 344 |
+
300b_A,Monocyte,CD14 monocyte,2835
|
| 345 |
+
300b_A,Monocyte,CD16 monocyte,437
|
| 346 |
+
300b_A,Monocyte,Intermediate monocyte,1513
|
| 347 |
+
300b_A,NK cell,CD56bright NK cell,142
|
| 348 |
+
300b_A,NK cell,CD56dim NK cell,1374
|
| 349 |
+
300b_A,NK cell,Proliferating NK cell,188
|
| 350 |
+
300b_A,Platelet,Platelet,71
|
| 351 |
+
300b_A,Progenitor cell,Progenitor cell,60
|
| 352 |
+
300b_A,T cell,CD8aa,18
|
| 353 |
+
300b_A,T cell,DN T cell,95
|
| 354 |
+
300b_A,T cell,MAIT,587
|
| 355 |
+
300b_A,T cell,Memory CD4 T cell,9374
|
| 356 |
+
300b_A,T cell,Memory CD8 T cell,2178
|
| 357 |
+
300b_A,T cell,Naive CD4 T cell,5366
|
| 358 |
+
300b_A,T cell,Naive CD8 T cell,3628
|
| 359 |
+
300b_A,T cell,Proliferating T cell,1997
|
| 360 |
+
300b_A,T cell,Treg,799
|
| 361 |
+
300b_A,T cell,gdT,444
|
| 362 |
+
300b_A,__unknown__,__unspecified__,115
|
| 363 |
+
301_A,B cell,Effector B cell,2919
|
| 364 |
+
301_A,B cell,Memory B cell,8381
|
| 365 |
+
301_A,B cell,Naive B cell,9589
|
| 366 |
+
301_A,B cell,Plasma cell,362
|
| 367 |
+
301_A,B cell,Transitional B cell,1137
|
| 368 |
+
301_A,DC,cDC1,1
|
| 369 |
+
301_A,DC,cDC2,24
|
| 370 |
+
301_A,Erythrocyte,Erythrocyte,1
|
| 371 |
+
301_A,ILC,ILC,127
|
| 372 |
+
301_A,Monocyte,CD14 monocyte,710
|
| 373 |
+
301_A,Monocyte,CD16 monocyte,331
|
| 374 |
+
301_A,Monocyte,Intermediate monocyte,27
|
| 375 |
+
301_A,NK cell,CD56dim NK cell,87
|
| 376 |
+
301_A,NK cell,Proliferating NK cell,51
|
| 377 |
+
301_A,Platelet,Platelet,13
|
| 378 |
+
301_A,Progenitor cell,Progenitor cell,51
|
| 379 |
+
301_A,T cell,CD8aa,2
|
| 380 |
+
301_A,T cell,DN T cell,5
|
| 381 |
+
301_A,T cell,MAIT,10
|
| 382 |
+
301_A,T cell,Memory CD4 T cell,433
|
| 383 |
+
301_A,T cell,Memory CD8 T cell,124
|
| 384 |
+
301_A,T cell,Naive CD4 T cell,334
|
| 385 |
+
301_A,T cell,Naive CD8 T cell,177
|
| 386 |
+
301_A,T cell,Proliferating T cell,2
|
| 387 |
+
301_A,T cell,Treg,72
|
| 388 |
+
301_A,T cell,gdT,49
|
| 389 |
+
301_A,__unknown__,__unspecified__,18
|
| 390 |
+
302_A,B cell,Effector B cell,1002
|
| 391 |
+
302_A,B cell,Memory B cell,1375
|
| 392 |
+
302_A,B cell,Naive B cell,2665
|
| 393 |
+
302_A,B cell,Plasma cell,41
|
| 394 |
+
302_A,B cell,Transitional B cell,542
|
| 395 |
+
302_A,DC,ASDC,18
|
| 396 |
+
302_A,DC,cDC1,92
|
| 397 |
+
302_A,DC,cDC2,596
|
| 398 |
+
302_A,DC,pDC,154
|
| 399 |
+
302_A,Erythrocyte,Erythrocyte,163
|
| 400 |
+
302_A,ILC,ILC,92
|
| 401 |
+
302_A,Monocyte,CD14 monocyte,4323
|
| 402 |
+
302_A,Monocyte,CD16 monocyte,364
|
| 403 |
+
302_A,Monocyte,Intermediate monocyte,5769
|
| 404 |
+
302_A,NK cell,CD56bright NK cell,568
|
| 405 |
+
302_A,NK cell,CD56dim NK cell,3373
|
| 406 |
+
302_A,NK cell,Proliferating NK cell,637
|
| 407 |
+
302_A,Platelet,Platelet,25
|
| 408 |
+
302_A,Progenitor cell,Progenitor cell,497
|
| 409 |
+
302_A,T cell,CD8aa,287
|
| 410 |
+
302_A,T cell,DN T cell,6033
|
| 411 |
+
302_A,T cell,MAIT,1959
|
| 412 |
+
302_A,T cell,Memory CD4 T cell,7529
|
| 413 |
+
302_A,T cell,Memory CD8 T cell,5752
|
| 414 |
+
302_A,T cell,Naive CD4 T cell,12441
|
| 415 |
+
302_A,T cell,Naive CD8 T cell,5590
|
| 416 |
+
302_A,T cell,Proliferating T cell,21
|
| 417 |
+
302_A,T cell,Treg,1208
|
| 418 |
+
302_A,T cell,gdT,1626
|
| 419 |
+
302_A,__unknown__,__unspecified__,10
|
| 420 |
+
304_A,B cell,Memory B cell,326661
|
| 421 |
+
304_A,B cell,Naive B cell,625239
|
| 422 |
+
304_A,B cell,Plasma cell,5876
|
| 423 |
+
304_A,DC,cDC2,112944
|
| 424 |
+
304_A,DC,pDC,18942
|
| 425 |
+
304_A,ILC,ILC,8356
|
| 426 |
+
304_A,Monocyte,CD14 monocyte,1582568
|
| 427 |
+
304_A,Monocyte,CD16 monocyte,232755
|
| 428 |
+
304_A,NK cell,CD56bright NK cell,125729
|
| 429 |
+
304_A,NK cell,CD56dim NK cell,512565
|
| 430 |
+
304_A,Progenitor cell,Progenitor cell,17322
|
| 431 |
+
304_A,T cell,MAIT,322923
|
| 432 |
+
304_A,T cell,Memory CD4 T cell,2376445
|
| 433 |
+
304_A,T cell,Memory CD8 T cell,757585
|
| 434 |
+
304_A,T cell,Naive CD4 T cell,1725983
|
| 435 |
+
304_A,T cell,Naive CD8 T cell,619816
|
| 436 |
+
304_A,T cell,Treg,168248
|
| 437 |
+
304_A,__unknown__,__unspecified__,158017
|
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_datasets.csv
ADDED
|
@@ -0,0 +1,23 @@
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|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
dataset_prefix,short_name,accession,enrichment,dataset_id,platform,assay,n_cells,n_samples,n_donors,train_cells,val_cells,test_cells,in_vitro_cells,conditions
|
| 2 |
+
065_A,Sound Life,GSE271896,PBMC,065_A_GSE271896_GSE271896_Sound_Life_deep_longitudinal_immune_profiling,10x,10x 3' v3,13789548,868,96,11138182,1445231,1206135,0,Healthy 13789548
|
| 3 |
+
304_A,Parse 10M cytokines,Parse Biosciences,PBMC,304_A_Parse_10M_PBMC_12donor_90cytokines,Parse,Parse,9697974,1092,12,7711697,1054708,931569,9697974,Healthy 9697974
|
| 4 |
+
061_A,RA at-risk cohort,GSE274680,PBMC,061_A_GSE274680_Savage_Allen_RA_at-risk_longitudinal_progression_PBMC_multi-omic_cohort,10x,10x 3' (hashed),4117384,239,90,3253619,438733,425032,0,Healthy 2113388; ACPA+ at risk of RA 1792129; RA 211867
|
| 5 |
+
200_A,Immunobiology of Aging,GSE275067,PBMC,200_A_GSE275067_Immunobiology_of_Aging_Cohort_PBMC_Profiling,10x,10x Flex,3758514,234,234,3014412,402041,342061,0,Healthy 3758514
|
| 6 |
+
009_A,Human Immune Health Atlas,AIFI HIHA,PBMC,009_A_Human_Immune_Health_Atlas_Human_Immune_Health_Atlas_AIFI_immune_dynamics_across_healthy_age,10x,10x 3' v3,1821725,108,108,1443923,191363,186439,0,Healthy 1821725
|
| 7 |
+
006_A,AIDA,CELLxGENE ced320a1,PBMC,006_A_collection_ced320a1-29f3-47c1-a735-513c7084d5_AIDA_Asian_Immune_Diversity_Atlas,10x,10x 5' v2,1265624,625,625,991970,138032,135622,0,Healthy 1265624
|
| 8 |
+
001_A,Perez SLE,CELLxGENE 436154da,PBMC,001_A_collection_436154da-bcf1-4130-9c8b-120ff9a888_Perez_et_al._lupus_PBMC_cell-type-specific_molecular_genetic_associations_to_lup,10x,10x 3' v2,1263676,1391,261,996252,131345,136079,0,SLE 777258; Healthy 486418
|
| 9 |
+
005_A,OneK1K,CELLxGENE dde06e0f,PBMC,005_A_collection_dde06e0f-ab3b-46be-96a2-a8082383c4_OneK1K_Yazar_et_al._single-cell_eQTL_mapping,10x,10x 3' v2,1248980,981,981,995251,127741,125988,0,Healthy 1248980
|
| 10 |
+
204_B,Circulating HSPC (aging/MDS),CELLxGENE,HSPC-enriched,204_B_CELLxGENE_cHSPC_aging_MDS_Human_circulating_hematopoietic_stem_and_progenitor_cells_in_aging_cytopenia_and,10x,10x 3' v3,1011884,239,206,808473,82481,120930,0,Healthy 605236; MDS 176233; MDS/MPN 130268; Cytopenia 100147
|
| 11 |
+
074_A,COMBAT,CELLxGENE COMBAT,PBMC,074_A_COMBAT_CELLxGENE_collection_COMBAT_CELLxGENE_collection,10x,10x 5' v1,836148,140,124,657262,92959,85927,0,COVID-19 724710; Healthy 92205; Influenza 19233
|
| 12 |
+
010_A,ScaleBio PBMC,CELLxGENE 4a9fd4d7,PBMC,010_A_collection_4a9fd4d7-d870-4265-89a5-ad51ab811d_ScaleBio_single-cell_RNA_sequencing_of_human_PBMCs,ScaleBio,ScaleBio,685024,1,1,685024,0,0,0,Healthy 685024
|
| 13 |
+
203_B,Indonesia diversity,CELLxGENE 665714af,PBMC,203_B_CELLxGENE_665714af_Ancestral_and_environmental_diversity_shape_the_immune_landscape_in_Indonesia,10x,10x 5' v2,462034,199,199,363636,47577,50821,0,Healthy 462034
|
| 14 |
+
093_C,SARS-CoV-2 local and systemic,CELLxGENE,PBMC,093_C_Local_and_systemic_SARS-CoV-2_response_CELLxG_Local_and_systemic_SARS-CoV-2_response_CELLxGENE,10x,10x 5' v1,422220,80,75,336885,48503,36832,0,Healthy 173684; COVID-19 151312; Post-COVID-19 97224
|
| 15 |
+
202_B,COVID-19 time course,GSE161918,PBMC,202_B_GSE161918_Time-resolved_Systems_Immunology_Reveals_a_Late_Juncture_Linked_to_Fatal_COVID-1,10x,10x 5' v1,372081,92,46,281960,60564,29557,0,COVID-19 277957; Healthy 94124
|
| 16 |
+
053_B,CITE-seq PBMC,CELLxGENE b0cf0afa,PBMC,053_B_collection_b0cf0afa-ec40-4d65-b570-ed4ceacc68_Integrated_analysis_of_multimodal_single-cell_data_CITE-seq_PBMC,10x,10x 3' v3,161764,24,8,114082,25871,21811,0,Healthy 161764
|
| 17 |
+
007_A,Miao RA,CELLxGENE e1a9ca56,PBMC,007_A_collection_e1a9ca56-f2ee-435d-980a-4f49ab7a95_Miao_et_al._RA_PBMC_disease_activity-associated_PBMC_subsets,10x,10x 3' v3,108717,36,36,85902,12841,9974,0,Healthy 60080; RA 48637
|
| 18 |
+
071_C,JDM CITE-seq,CELLxGENE,PBMC,071_C_JDM_CITE-seq_PBMC_CELLxGENE_JDM_CITE-seq_PBMC_CELLxGENE,10x,10x 3' v3,105827,106,20,81787,15216,8824,0,JDM 82666; Healthy 23161
|
| 19 |
+
058_B,COVID-19 immunodeficiency,CELLxGENE eb735cc9,PBMC,058_B_collection_eb735cc9-d0a7-48fa-b255-db726bf365_COVID_PBMC_nasal_swab_donors_with_immunodeficiencies_and_autoimmune_conditions,10x,10x 5' v1,97499,22,22,75412,11634,10453,0,COVID-19 97499
|
| 20 |
+
302_A,IL-36 stimulation,GSE314010,PBMC,302_A_GSE314010_SLE_IL36_stim_PBMC_scRNAseq,10x,10x (version n.r.),64752,5,5,37807,14473,12472,64752,Healthy 64752
|
| 21 |
+
081_B,SARS-CoV-2 Seq-Well,CELLxGENE,PBMC,081_B_Single-cell_atlas_of_peripheral_immune_respon_Single-cell_atlas_of_peripheral_immune_response_to_SARS-CoV-2,Seq-Well,Seq-Well,44721,13,13,33040,6545,5136,0,COVID-19 28094; Healthy 16627
|
| 22 |
+
300b_A,DRESS,GSE132802,PBMC,300b_A_GSE132802_DRESS_DiHS_PBMC_only_scRNAseq,10x,10x v2 (3'/5'),34051,7,2,19816,7660,6575,11037,DRESS 25272; Healthy 8779
|
| 23 |
+
301_A,SLE B cells,GSE163121,B-cell enriched,301_A_GSE163121_SLE_healthy_Bcell_PBMC_scRNAseq,10x,10x 3' v2,25037,5,5,14988,5514,4535,0,SLE 15402; Healthy 9635
|
paper-releases/pbisc-diffusion/updates/20261006T054909Z-fig1-corpus-panels/diffusion/dataset/server_1/manuscript/source_data/corpus/corpus_samples.csv
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