Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/pooled/cat.csv

@@ -0,0 +1,361 @@
+dataset,design,unit,arm,predictor,celltype,k,k_eff,cat_same_sign,cat_any_sign,chance_same_sign,chance_any_sign,G_both,pred_defined,n_tested_obs,n_tested_pred
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+giroux2022,pooled,pooled,pseudo_full__cal,generated:pseudo_full__cal,NK cell,10,10,0.0,0.0,0.0013561160835367507,0.0027122321670735015,3687,True,5103,3688
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+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,B cell,500,500,0.07,0.106,0.08229098090849243,0.16458196181698487,3038,True,5087,3041
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,B cell,10,10,0.1,0.1,0.0009865824782951855,0.001973164956590371,5068,True,5087,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,B cell,20,20,0.1,0.1,0.001973164956590371,0.003946329913180742,5068,True,5087,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,B cell,50,50,0.08,0.08,0.004932912391475927,0.009865824782951855,5068,True,5087,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,B cell,100,100,0.08,0.08,0.009865824782951855,0.01973164956590371,5068,True,5087,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,B cell,200,200,0.105,0.105,0.01973164956590371,0.03946329913180742,5068,True,5087,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,B cell,500,500,0.142,0.152,0.04932912391475927,0.09865824782951854,5068,True,5087,5471
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,Monocyte,10,10,0.0,0.0,0.0014367816091954023,0.0028735632183908046,3480,True,5239,3487
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,Monocyte,20,20,0.0,0.0,0.0028735632183908046,0.005747126436781609,3480,True,5239,3487
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,Monocyte,50,50,0.0,0.0,0.007183908045977011,0.014367816091954023,3480,True,5239,3487
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,Monocyte,100,100,0.02,0.02,0.014367816091954023,0.028735632183908046,3480,True,5239,3487
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,Monocyte,200,200,0.07,0.07,0.028735632183908046,0.05747126436781609,3480,True,5239,3487
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,Monocyte,500,500,0.088,0.116,0.07183908045977011,0.14367816091954022,3480,True,5239,3487
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,Monocyte,10,10,0.2,0.2,0.0009582215408202376,0.0019164430816404753,5218,True,5239,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,Monocyte,20,20,0.2,0.2,0.0019164430816404753,0.0038328861632809506,5218,True,5239,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,Monocyte,50,50,0.2,0.2,0.004791107704101188,0.009582215408202376,5218,True,5239,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,Monocyte,100,100,0.24,0.24,0.009582215408202376,0.019164430816404752,5218,True,5239,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,Monocyte,200,200,0.315,0.315,0.019164430816404752,0.038328861632809505,5218,True,5239,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,Monocyte,500,500,0.316,0.316,0.047911077041011885,0.09582215408202377,5218,True,5239,5471
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,NK cell,10,10,0.0,0.0,0.0014885382554331646,0.002977076510866329,3359,True,5103,3362
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,NK cell,20,20,0.0,0.0,0.002977076510866329,0.005954153021732658,3359,True,5103,3362
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,NK cell,50,50,0.0,0.0,0.007442691277165823,0.014885382554331646,3359,True,5103,3362
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,NK cell,100,100,0.01,0.01,0.014885382554331646,0.02977076510866329,3359,True,5103,3362
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,NK cell,200,200,0.015,0.015,0.02977076510866329,0.05954153021732658,3359,True,5103,3362
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,NK cell,500,500,0.062,0.068,0.07442691277165824,0.14885382554331647,3359,True,5103,3362
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,NK cell,10,10,0.1,0.1,0.0009836710603974032,0.0019673421207948064,5083,True,5103,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,NK cell,20,20,0.1,0.1,0.0019673421207948064,0.003934684241589613,5083,True,5103,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,NK cell,50,50,0.1,0.1,0.004918355301987015,0.00983671060397403,5083,True,5103,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,NK cell,100,100,0.08,0.08,0.00983671060397403,0.01967342120794806,5083,True,5103,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,NK cell,200,200,0.07,0.075,0.01967342120794806,0.03934684241589612,5083,True,5103,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,NK cell,500,500,0.098,0.136,0.04918355301987015,0.0983671060397403,5083,True,5103,5471
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,DC,10,10,0.0,0.0,0.0019372336303758234,0.0038744672607516468,2581,True,4914,2584
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,DC,20,20,0.0,0.0,0.0038744672607516468,0.0077489345215032935,2581,True,4914,2584
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,DC,50,50,0.0,0.0,0.009686168151879117,0.019372336303758234,2581,True,4914,2584
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,DC,100,100,0.0,0.0,0.019372336303758234,0.03874467260751647,2581,True,4914,2584
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,DC,200,200,0.01,0.025,0.03874467260751647,0.07748934521503294,2581,True,4914,2584
+giroux2022,pooled,pooled,zs__cal,generated:zs__cal,DC,500,500,0.02,0.046,0.09686168151879117,0.19372336303758234,2581,True,4914,2584
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,DC,10,10,0.1,0.1,0.0010212418300653595,0.002042483660130719,4896,True,4914,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,DC,20,20,0.05,0.05,0.002042483660130719,0.004084967320261438,4896,True,4914,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,DC,50,50,0.08,0.08,0.0051062091503267975,0.010212418300653595,4896,True,4914,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,DC,100,100,0.08,0.08,0.010212418300653595,0.02042483660130719,4896,True,4914,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,DC,200,200,0.11,0.11,0.02042483660130719,0.04084967320261438,4896,True,4914,5471
+giroux2022,pooled,pooled,zs__cal,broadcast:conditions_pooled_cal.npz@7ad270e1,DC,500,500,0.136,0.174,0.05106209150326797,0.10212418300653595,4896,True,4914,5471
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,T cell,10,10,0.0,0.0,0.001325556733828208,0.002651113467656416,3772,True,5295,3775
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,T cell,20,20,0.05,0.05,0.002651113467656416,0.005302226935312832,3772,True,5295,3775
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,T cell,50,50,0.06,0.06,0.006627783669141039,0.013255567338282079,3772,True,5295,3775
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,T cell,100,100,0.1,0.1,0.013255567338282079,0.026511134676564158,3772,True,5295,3775
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,T cell,200,200,0.16,0.16,0.026511134676564158,0.053022269353128315,3772,True,5295,3775
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,T cell,500,500,0.268,0.268,0.0662778366914104,0.1325556733828208,3772,True,5295,3775
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,T cell,10,10,0.2,0.2,0.0009442870632672333,0.0018885741265344666,5295,True,5295,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,T cell,20,20,0.25,0.25,0.0018885741265344666,0.003777148253068933,5295,True,5295,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,T cell,50,50,0.26,0.26,0.004721435316336166,0.009442870632672332,5295,True,5295,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,T cell,100,100,0.32,0.32,0.009442870632672332,0.018885741265344664,5295,True,5295,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,T cell,200,200,0.445,0.445,0.018885741265344664,0.03777148253068933,5295,True,5295,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,T cell,500,500,0.53,0.53,0.047214353163361665,0.09442870632672333,5295,True,5295,5384
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,B cell,10,10,0.0,0.0,0.0017642907551164433,0.0035285815102328866,2834,True,5087,2837
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,B cell,20,20,0.0,0.0,0.0035285815102328866,0.007057163020465773,2834,True,5087,2837
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,B cell,50,50,0.08,0.08,0.008821453775582216,0.017642907551164433,2834,True,5087,2837
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,B cell,100,100,0.07,0.09,0.017642907551164433,0.035285815102328866,2834,True,5087,2837
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,B cell,200,200,0.08,0.11,0.035285815102328866,0.07057163020465773,2834,True,5087,2837
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,B cell,500,500,0.096,0.14,0.08821453775582216,0.17642907551164433,2834,True,5087,2837
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,B cell,10,10,0.1,0.1,0.000982897582071948,0.001965795164143896,5087,True,5087,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,B cell,20,20,0.05,0.05,0.001965795164143896,0.003931590328287792,5087,True,5087,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,B cell,50,50,0.04,0.04,0.00491448791035974,0.00982897582071948,5087,True,5087,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,B cell,100,100,0.12,0.12,0.00982897582071948,0.01965795164143896,5087,True,5087,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,B cell,200,200,0.13,0.13,0.01965795164143896,0.03931590328287792,5087,True,5087,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,B cell,500,500,0.244,0.246,0.049144879103597404,0.09828975820719481,5087,True,5087,5384
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,Monocyte,10,10,0.0,0.0,0.0015718327569946558,0.0031436655139893115,3181,True,5239,3185
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,Monocyte,20,20,0.0,0.0,0.0031436655139893115,0.006287331027978623,3181,True,5239,3185
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,Monocyte,50,50,0.02,0.02,0.00785916378497328,0.01571832756994656,3181,True,5239,3185
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,Monocyte,100,100,0.06,0.06,0.01571832756994656,0.03143665513989312,3181,True,5239,3185
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,Monocyte,200,200,0.09,0.095,0.03143665513989312,0.06287331027978624,3181,True,5239,3185
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,Monocyte,500,500,0.128,0.148,0.07859163784973279,0.15718327569946558,3181,True,5239,3185
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,Monocyte,10,10,0.4,0.4,0.000954380606986066,0.001908761213972132,5239,True,5239,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,Monocyte,20,20,0.25,0.25,0.001908761213972132,0.003817522427944264,5239,True,5239,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,Monocyte,50,50,0.28,0.28,0.00477190303493033,0.00954380606986066,5239,True,5239,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,Monocyte,100,100,0.28,0.28,0.00954380606986066,0.01908761213972132,5239,True,5239,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,Monocyte,200,200,0.31,0.31,0.01908761213972132,0.03817522427944264,5239,True,5239,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,Monocyte,500,500,0.368,0.368,0.047719030349303304,0.09543806069860661,5239,True,5239,5384
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,NK cell,10,10,0.0,0.0,0.0016750418760469012,0.0033500837520938024,2985,True,5103,2988
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,NK cell,20,20,0.0,0.0,0.0033500837520938024,0.006700167504187605,2985,True,5103,2988
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,NK cell,50,50,0.0,0.0,0.008375209380234505,0.01675041876046901,2985,True,5103,2988
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,NK cell,100,100,0.02,0.02,0.01675041876046901,0.03350083752093802,2985,True,5103,2988
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,NK cell,200,200,0.05,0.05,0.03350083752093802,0.06700167504187604,2985,True,5103,2988
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,NK cell,500,500,0.086,0.088,0.08375209380234507,0.16750418760469013,2985,True,5103,2988
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,NK cell,10,10,0.2,0.2,0.0009798157946306093,0.0019596315892612187,5103,True,5103,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,NK cell,20,20,0.2,0.2,0.0019596315892612187,0.003919263178522437,5103,True,5103,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,NK cell,50,50,0.12,0.12,0.004899078973153047,0.009798157946306094,5103,True,5103,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,NK cell,100,100,0.14,0.14,0.009798157946306094,0.01959631589261219,5103,True,5103,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,NK cell,200,200,0.125,0.125,0.01959631589261219,0.03919263178522438,5103,True,5103,5384
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,NK cell,500,500,0.216,0.226,0.048990789731530475,0.09798157946306095,5103,True,5103,5384
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,DC,10,10,0.0,0.0,0.0020903010033444815,0.004180602006688963,2392,True,4914,2394
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,DC,20,20,0.0,0.0,0.004180602006688963,0.008361204013377926,2392,True,4914,2394
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,DC,50,50,0.0,0.0,0.010451505016722408,0.020903010033444816,2392,True,4914,2394
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,DC,100,100,0.0,0.0,0.020903010033444816,0.04180602006688963,2392,True,4914,2394
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,DC,200,200,0.015,0.02,0.04180602006688963,0.08361204013377926,2392,True,4914,2394
+giroux2022,pooled,pooled,zs__pseudo,generated:zs__pseudo,DC,500,500,0.028,0.04,0.10451505016722408,0.20903010033444816,2392,True,4914,2394
+giroux2022,pooled,pooled,zs__pseudo,broadcast:conditions_pooled_pseudo.npz@e35caf80,DC,10,10,0.1,0.1,0.0010175010175010174,0.002035002035002035,4914,True,4914,5384
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paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/pooled/ceiling.csv

@@ -0,0 +1,51 @@
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+giroux2022,pooled,pooled,generated:zs__pseudo,zs__pseudo,B cell,3030.0,0.2844064158997225,0.0029478070226349688,0.19807842897871883,0.0025858821377363395,0.285270588742883,0.19826574415900577,0.28089642647630714,0.20107477141524913,0.2851469277876885,0.19620588506547307,0.28846776521356826,0.20000822127825263,0.28225037127816527,0.1948375229756136,,,,,,,,,,,
+giroux2022,pooled,pooled,generated:zs__pseudo,zs__pseudo,Monocyte,3034.0,0.294825570489298,0.009915412433006407,0.23687921729513225,0.010467603441791474,0.27843903441003315,0.2193136848900161,0.30184806139602516,0.23682978507086888,0.29688643442260776,0.24636110397092403,0.29375951956910434,0.23910824959080748,0.3031948026487195,0.24278326295304484,,,,,,,,,,,
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+giroux2022,pooled,pooled,generated:zs__raw,zs__raw,T cell,2886.0,0.4876618955027202,0.0026321321099040734,0.3478186235161326,0.004172658675543682,0.4880417324892029,0.3512074979388625,0.48638873885053324,0.34802480168850514,0.4902670973427241,0.35097094410256957,0.4838314858191533,0.340880060006491,0.48978042301198726,0.3480098138442347,,,,,,,,,,,
+giroux2022,pooled,pooled,generated:zs__raw,zs__raw,B cell,3030.0,0.1700120325015863,0.008045203751775396,0.08599062227123914,0.009806820757132378,0.17328902394429455,0.08790792128797686,0.17560629835472974,0.100473806514281,0.1612031446137296,0.07837359200734348,0.16163614050833242,0.0754889612889489,0.17832555508684525,0.08770883025764552,,,,,,,,,,,
+giroux2022,pooled,pooled,generated:zs__raw,zs__raw,Monocyte,3034.0,0.33308722574856625,0.0045702504939696955,0.2286331890446609,0.006673972929989791,0.3280435522277521,0.2212838354662439,0.34045346131274834,0.23198575037477193,0.33343616419276134,0.2380220839243069,0.33146998494226404,0.22819836093045773,0.33203296606730553,0.223675914527524,,,,,,,,,,,
+giroux2022,pooled,pooled,generated:zs__raw,zs__raw,NK cell,2931.0,0.32358768659008297,0.005039658116997993,0.21739719483753053,0.0072312828854975445,0.322958518186327,0.21466261452922406,0.31722926264532775,0.20767531726086239,0.32224612710510303,0.22213468631762998,0.3312365157136836,0.2264977623217865,0.32426800929997324,0.21601559375814966,,,,,,,,,,,
+giroux2022,pooled,pooled,broadcast:conditions_pooled_cal.npz@7ad270e1,,T cell,2886.0,0.5647925448705052,0.0030954681765806213,0.474372218767527,0.0032814543936943563,0.5628811571274057,0.47028758772648643,0.5635038731023096,0.4752209265840262,0.5701106569033677,0.47844606005836743,0.5626181204605967,0.47186519605641003,0.5648489167588469,0.4760413234123448,,,,,,,,,,,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55
+giroux2022,pooled,pooled,broadcast:conditions_pooled_cal.npz@7ad270e1,,B cell,3030.0,0.44066244629284296,0.0065346307346694065,0.3695853709289513,0.010585475636641143,0.43725316706986317,0.36703630758893335,0.4408339043550849,0.3658269120151599,0.43591956401068377,0.3638943011727473,0.4374135899566915,0.36287219155706424,0.45189200607189145,0.38829714231085155,,,,,,,,,,,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55
+giroux2022,pooled,pooled,broadcast:conditions_pooled_cal.npz@7ad270e1,,Monocyte,3034.0,0.6596462706007052,0.010126516456465251,0.5216557579556149,0.014528140848104299,0.6466440744678053,0.5059275178605519,0.6610507166778933,0.517439632498042,0.6537244205833216,0.5156164621557955,0.6633752025152926,0.5245217347604341,0.6734369387592138,0.5447734425032509,,,,,,,,,,,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55
+giroux2022,pooled,pooled,broadcast:conditions_pooled_cal.npz@7ad270e1,,NK cell,2931.0,0.5335637460928914,0.007900561937272753,0.4269390071856809,0.008967944704179553,0.540755308577019,0.43463719633331654,0.5231976060501847,0.4146920285649856,0.5270379474249585,0.4200771102963194,0.537756139546592,0.4322851729529664,0.5390717288657028,0.43300352778081624,,,,,,,,,,,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55
+giroux2022,pooled,pooled,broadcast:conditions_pooled_raw.npz@1370617c,,T cell,2886.0,0.5850721270132853,0.0031768974665744116,0.5104226196041235,0.003972068902066255,0.5821072032935407,0.5051666463881263,0.5844064718743435,0.5126109559913398,0.5902250698647531,0.5144159027984148,0.5830022768903529,0.5072839289364812,0.5856196131434361,0.5126356639062554,,,,,,,,,,,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015
+giroux2022,pooled,pooled,broadcast:conditions_pooled_raw.npz@1370617c,,B cell,3030.0,0.4523007352098027,0.007591980493510723,0.3856626967932806,0.010597511296165504,0.44893540532951054,0.38405464917481996,0.45117337417837944,0.3834584962488396,0.4446842314682479,0.3792104867091798,0.45177396275741294,0.37761399084023134,0.46493670231546247,0.4039758609933321,,,,,,,,,,,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015
+giroux2022,pooled,pooled,broadcast:conditions_pooled_raw.npz@1370617c,,Monocyte,3034.0,0.6640107322838724,0.009096883981758553,0.539371815224471,0.014516028713282069,0.6530218178944003,0.5238154899500747,0.664584875676205,0.5317631064971495,0.6581444221924742,0.5366198052137001,0.6675157082550832,0.542341630867846,0.6767868374011994,0.5623190435935848,,,,,,,,,,,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015
+giroux2022,pooled,pooled,broadcast:conditions_pooled_raw.npz@1370617c,,NK cell,2931.0,0.5407171360374308,0.006485489030946017,0.4496009511847376,0.008928941058721437,0.5448802741154799,0.455187540510032,0.5320022613265573,0.437769643562357,0.5354992958232113,0.4422057263326938,0.5455088126660962,0.45644039334681047,0.5456950362558095,0.4564014521717947,,,,,,,,,,,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015
+giroux2022,pooled,pooled,broadcast:conditions_pooled_pseudo.npz@e35caf80,,T cell,2886.0,0.8603648153149288,0.0023141561365127993,0.855426305429409,0.002046927674467617,0.8590715317732653,0.8542639280545835,0.8631297076000776,0.8566595254728697,0.860652998660136,0.858105545797038,0.8571966252454561,0.8528413276567165,0.8617732132957093,0.8552612001658375,,,,,,,,,,,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b
+giroux2022,pooled,pooled,broadcast:conditions_pooled_pseudo.npz@e35caf80,,B cell,3030.0,0.5387203514133464,0.008585920093932256,0.4758618312965984,0.009228471824006972,0.528146105394628,0.4672822138551998,0.5434031208429503,0.4752262638651258,0.5327213548722967,0.4690949266051459,0.5394478560998612,0.47702864004455725,0.549883319856996,0.4906771121129632,,,,,,,,,,,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b
+giroux2022,pooled,pooled,broadcast:conditions_pooled_pseudo.npz@e35caf80,,Monocyte,3034.0,0.687409488388211,0.012884527935226393,0.5562519558060519,0.021255048877326575,0.6660894421826852,0.5188800821636431,0.6878602555199471,0.5638617872590562,0.6955187890411222,0.568952229210901,0.6882159958541861,0.5600030381503291,0.6993629593431148,0.5695626422463298,,,,,,,,,,,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b
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+giroux2022,pooled,pooled,split_half_A_vs_B,,mean4,,0.8963310768143463,0.0008479133641406827,0.7850129413304465,0.003199371217261624,0.8965604203759056,0.7822002528755194,0.897317330163873,0.7889526703330123,0.8950231308406189,0.7822867495548855,0.8961169176090934,0.7837148444409874,0.896637585082241,0.787910189447828,0.9441432653258389,0.9714956476546757,0.8753556667368176,0.934909689565648,,,,,,,
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+giroux2022,pooled,pooled,generated:zs__raw,zs__raw,mean4,,0.32858721008573893,0.0018689120661660103,0.2199599074173908,0.0020991442363579855,0.3280832067118941,0.21876546730557683,0.32991944029083475,0.22203991895960512,0.32678813331357953,0.2223753265879625,0.3270435317458583,0.21776628613692103,0.3311017383665278,0.21885253809688848,,,,,,,,,,,
+giroux2022,pooled,pooled,broadcast:conditions_pooled_cal.npz@7ad270e1,,mean4,,0.5496662519642362,0.0045209607044907766,0.4481380887094435,0.007135554350096455,0.5468834268105233,0.44447215237732207,0.5471465250463682,0.4432948749155534,0.5466981472305829,0.4445084834208074,0.5502907631197932,0.4478860738317187,0.5573123976139137,0.46052885900181584,,,,,,,,,,,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55
+giroux2022,pooled,pooled,broadcast:conditions_pooled_raw.npz@1370617c,,mean4,,0.5605251826360979,0.004751509013579095,0.4712645207016532,0.0072351032973155946,0.5572361751582329,0.4670560815057632,0.5580417457638713,0.46640055057492147,0.5571382548371716,0.4681129802634971,0.5619501901422363,0.47091998599784224,0.5682595472789769,0.4838330051662417,,,,,,,,,,,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015
+giroux2022,pooled,pooled,broadcast:conditions_pooled_pseudo.npz@e35caf80,,mean4,,0.7026482550909734,0.006078208156627215,0.6428013923583193,0.008900309681898826,0.6935429123751683,0.6278809215094164,0.7033029572411933,0.6446696540901964,0.7042868461060755,0.6462105114962746,0.7016636326104281,0.6435834750065245,0.7104449271220019,0.6516623996891849,,,,,,,,,,,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/pooled/contrast.csv

@@ -0,0 +1,61 @@
+dataset,design,unit,arm,celltype,statistic,label,n_genes,pearson_r_generated,spearman_r_generated,pearson_r_broadcast,spearman_r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,condition,condition_sha256,pearson_r_generated_scorer,pearson_r_broadcast_scorer,partial_r_generated_given_broadcast_scorer,r_generated_vs_broadcast_scorer
+giroux2022,pooled,pooled,pseudo_full__cal,T cell,mean_cp10k,sc-only fine-tune (+ calibration),2886.0,0.42623596807524516,0.2566474825297168,0.5659673475627633,0.476728703466143,0.18383448029717303,0.5252361386740584,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.4262359680752451,0.5659673475627633,0.183834480297173,0.5252361386740584
+giroux2022,pooled,pooled,pseudo_full__cal,T cell,pseudobulk_log1p_cpm,sc-only fine-tune (+ calibration),2886.0,0.3461960449536465,0.2907894707365112,0.5872800815024365,0.5240155270571906,0.1989219542133334,0.3307698304894842,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.3461960449536465,0.5872800815024365,0.1989219542133334,0.3307698304894842
+giroux2022,pooled,pooled,pseudo_full__cal,B cell,mean_cp10k,sc-only fine-tune (+ calibration),3030.0,0.22106394015131786,0.12085141512238537,0.4684983716314166,0.3975364747790359,0.15502413537024784,0.18454273342776842,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.2210639401513178,0.4684983716314166,0.1550241353702478,0.1845427334277684
+giroux2022,pooled,pooled,pseudo_full__cal,B cell,pseudobulk_log1p_cpm,sc-only fine-tune (+ calibration),3030.0,0.20454350342817168,0.177736917408566,0.4559624814492533,0.40024055001003,0.14499248229370748,0.16968888360219533,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.2045435034281716,0.4559624814492533,0.1449924822937074,0.1696888836021953
+giroux2022,pooled,pooled,pseudo_full__cal,Monocyte,mean_cp10k,sc-only fine-tune (+ calibration),3034.0,0.3533977286889749,0.2427770670602611,0.6755137332945067,0.5624490905981893,0.1586787718350898,0.3616756601741432,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.3533977286889749,0.6755137332945067,0.1586787718350898,0.3616756601741432
+giroux2022,pooled,pooled,pseudo_full__cal,Monocyte,pseudobulk_log1p_cpm,sc-only fine-tune (+ calibration),3034.0,0.24410644883104157,0.2085089237142221,0.6650516311426722,0.5804482729798124,0.12107992012140842,0.23489021630038223,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.2441064488310415,0.6650516311426722,0.1210799201214084,0.2348902163003822
+giroux2022,pooled,pooled,pseudo_full__cal,NK cell,mean_cp10k,sc-only fine-tune (+ calibration),2931.0,0.37581184871181705,0.1970232109224475,0.5473788103694355,0.44732984809983745,0.20308379065171878,0.4023077692116598,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.375811848711817,0.5473788103694355,0.2030837906517187,0.4023077692116598
+giroux2022,pooled,pooled,pseudo_full__cal,NK cell,pseudobulk_log1p_cpm,sc-only fine-tune (+ calibration),2931.0,0.29608753323260967,0.24594861258453918,0.5162568751803225,0.4693274505060844,0.2117689015466207,0.23178505163610028,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.2960875332326096,0.5162568751803225,0.2117689015466207,0.2317850516361002
+giroux2022,pooled,pooled,pseudo_full__raw,T cell,mean_cp10k,"sc-only fine-tune, real bulk",2886.0,0.6487722518212964,0.5986853360433246,0.5864764503055301,0.5137046185745339,0.5605612312238595,0.39500008570378853,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.6487722518212964,0.5864764503055301,0.5605612312238595,0.3950000857037885
+giroux2022,pooled,pooled,pseudo_full__raw,T cell,pseudobulk_log1p_cpm,"sc-only fine-tune, real bulk",2886.0,0.47879276430158463,0.45395251736869185,0.6077451868574512,0.5406572385492411,0.35693056336539725,0.3511167839765901,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.4787927643015846,0.6077451868574512,0.3569305633653972,0.3511167839765901
+giroux2022,pooled,pooled,pseudo_full__raw,B cell,mean_cp10k,"sc-only fine-tune, real bulk",3030.0,0.23169654288270278,0.1814218206205409,0.48025603753384744,0.4160595867097935,0.14947364167353372,0.21588627213911363,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.2316965428827027,0.4802560375338474,0.1494736416735337,0.2158862721391136
+giroux2022,pooled,pooled,pseudo_full__raw,B cell,pseudobulk_log1p_cpm,"sc-only fine-tune, real bulk",3030.0,0.14783404212737206,0.12084500985184,0.4644022343428308,0.4073840878062634,0.10405276294226873,0.1213680674213653,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.147834042127372,0.4644022343428308,0.1040527629422687,0.1213680674213653
+giroux2022,pooled,pooled,pseudo_full__raw,Monocyte,mean_cp10k,"sc-only fine-tune, real bulk",3034.0,0.2520238886656948,0.22977242992016453,0.6794468550874515,0.5822843980734358,0.18261467676804652,0.17682980811109092,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.2520238886656948,0.6794468550874515,0.1826146767680465,0.1768298081110909
+giroux2022,pooled,pooled,pseudo_full__raw,Monocyte,pseudobulk_log1p_cpm,"sc-only fine-tune, real bulk",3034.0,0.176653479759179,0.21218380416674715,0.6731923266540611,0.5877699132162567,0.156165741369828,0.09159256124345523,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.176653479759179,0.6731923266540611,0.156165741369828,0.0915925612434552
+giroux2022,pooled,pooled,pseudo_full__raw,NK cell,mean_cp10k,"sc-only fine-tune, real bulk",2931.0,0.46009752161412615,0.409298238172732,0.554884628817489,0.4715372337505029,0.38516922951732274,0.2737614384680051,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.4600975216141261,0.554884628817489,0.3851692295173227,0.2737614384680051
+giroux2022,pooled,pooled,pseudo_full__raw,NK cell,pseudobulk_log1p_cpm,"sc-only fine-tune, real bulk",2931.0,0.24966781730800514,0.27454044704522235,0.5368131432639086,0.48425117234266635,0.19508668876135254,0.1625559566666239,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.2496678173080051,0.5368131432639086,0.1950866887613525,0.1625559566666239
+giroux2022,pooled,pooled,real_lora__raw,T cell,mean_cp10k,"LoRA, all training pairs",2886.0,0.7058892017145734,0.6256780149920826,0.5864764503055301,0.5137046185745339,0.5677348500798806,0.5474703422259507,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.7058892017145734,0.5864764503055301,0.5677348500798806,0.5474703422259507
+giroux2022,pooled,pooled,real_lora__raw,T cell,pseudobulk_log1p_cpm,"LoRA, all training pairs",2886.0,0.5300904934349299,0.5255168891794947,0.6077451868574512,0.5406572385492411,0.3930729856792319,0.4019113902112088,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.5300904934349299,0.6077451868574512,0.3930729856792319,0.4019113902112088
+giroux2022,pooled,pooled,real_lora__raw,B cell,mean_cp10k,"LoRA, all training pairs",3030.0,0.3331461448964941,0.27102980496770074,0.48025603753384744,0.4160595867097935,0.24708865182692588,0.25764250676689804,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.3331461448964941,0.4802560375338474,0.2470886518269258,0.257642506766898
+giroux2022,pooled,pooled,real_lora__raw,B cell,pseudobulk_log1p_cpm,"LoRA, all training pairs",3030.0,0.19522108611243205,0.20314714335678918,0.4644022343428308,0.4073840878062634,0.1358306857697144,0.16488422704159095,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.195221086112432,0.4644022343428308,0.1358306857697144,0.1648842270415909
+giroux2022,pooled,pooled,real_lora__raw,Monocyte,mean_cp10k,"LoRA, all training pairs",3034.0,0.4503881000330023,0.3565604632638294,0.6794468550874515,0.5822843980734358,0.23032155757513073,0.4394578350063132,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.4503881000330023,0.6794468550874515,0.2303215575751307,0.4394578350063132
+giroux2022,pooled,pooled,real_lora__raw,Monocyte,pseudobulk_log1p_cpm,"LoRA, all training pairs",3034.0,0.30674338215578634,0.3104248135625766,0.6731923266540611,0.5877699132162567,0.200925197142253,0.24148046427725728,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.3067433821557863,0.6731923266540611,0.200925197142253,0.2414804642772572
+giroux2022,pooled,pooled,real_lora__raw,NK cell,mean_cp10k,"LoRA, all training pairs",2931.0,0.3543704855190955,0.2611861943569053,0.554884628817489,0.4715372337505029,0.246993848396693,0.2835206185693988,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.3543704855190955,0.554884628817489,0.246993848396693,0.2835206185693988
+giroux2022,pooled,pooled,real_lora__raw,NK cell,pseudobulk_log1p_cpm,"LoRA, all training pairs",2931.0,0.17579006249169446,0.15400780661359845,0.5368131432639086,0.48425117234266635,0.13023274385669364,0.12437419371341456,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.1757900624916944,0.5368131432639086,0.1302327438566936,0.1243741937134145
+giroux2022,pooled,pooled,zs__cal,T cell,mean_cp10k,Zero-shot + calibration,2886.0,0.39140634506564287,0.27929434772064715,0.5659673475627633,0.476728703466143,0.15611910909797974,0.4938193805260772,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.3914063450656428,0.5659673475627633,0.1561191090979797,0.4938193805260772
+giroux2022,pooled,pooled,zs__cal,T cell,pseudobulk_log1p_cpm,Zero-shot + calibration,2886.0,0.27784697365588773,0.2720692411477088,0.5872800815024365,0.5240155270571906,0.12005740082534946,0.31613182936891243,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.2778469736558877,0.5872800815024365,0.1200574008253494,0.3161318293689124
+giroux2022,pooled,pooled,zs__cal,B cell,mean_cp10k,Zero-shot + calibration,3030.0,0.13897863846757524,0.0772486317014581,0.4684983716314166,0.3975364747790359,0.07202482307657974,0.16263545933969406,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.1389786384675752,0.4684983716314166,0.0720248230765797,0.162635459339694
+giroux2022,pooled,pooled,zs__cal,B cell,pseudobulk_log1p_cpm,Zero-shot + calibration,3030.0,0.04597800178515316,0.03444293893473491,0.4559624814492533,0.40024055001003,-0.005435063698128341,0.11138000930544076,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.0459780017851531,0.4559624814492533,-0.0054350636981283,0.1113800093054407
+giroux2022,pooled,pooled,zs__cal,Monocyte,mean_cp10k,Zero-shot + calibration,3034.0,0.238723492704008,0.14986921452063778,0.6755137332945067,0.5624490905981893,0.09374342210690059,0.2544387773290845,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.238723492704008,0.6755137332945067,0.0937434221069005,0.2544387773290845
+giroux2022,pooled,pooled,zs__cal,Monocyte,pseudobulk_log1p_cpm,Zero-shot + calibration,3034.0,0.12348300097718473,0.13842097054550034,0.6650516311426722,0.5804482729798124,0.05951357094192386,0.1193230016463349,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.1234830009771847,0.6650516311426722,0.0595135709419238,0.1193230016463349
+giroux2022,pooled,pooled,zs__cal,NK cell,mean_cp10k,Zero-shot + calibration,2931.0,0.30537253082359156,0.1689012369745203,0.5473788103694355,0.44732984809983745,0.2116803822166316,0.24402854933721127,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.3053725308235915,0.5473788103694355,0.2116803822166316,0.2440285493372112
+giroux2022,pooled,pooled,zs__cal,NK cell,pseudobulk_log1p_cpm,Zero-shot + calibration,2931.0,0.18296318066741546,0.16612989277486384,0.5162568751803225,0.4693274505060844,0.14157935444585545,0.12126654871775831,conditions_pooled_cal.npz@7ad270e1,7ad270e1b7bd1b5b9b76826877c5ba53fa833a0040c39c11297726f053059b55,0.1829631806674154,0.5162568751803225,0.1415793544458554,0.1212665487177583
+giroux2022,pooled,pooled,zs__pseudo,T cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",2886.0,0.6006086507638249,0.4936850183923464,0.8640119559181801,0.8639207509891188,0.11180511882524242,0.6453730568643958,conditions_pooled_pseudo.npz@e35caf80,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b,0.6006086507638249,0.8640119559181801,0.1118051188252424,0.6453730568643958
+giroux2022,pooled,pooled,zs__pseudo,T cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",2886.0,0.4373160147675721,0.4249975304659121,0.892490562826782,0.8825977131345306,0.09283267793749124,0.44805023007697964,conditions_pooled_pseudo.npz@e35caf80,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b,0.4373160147675721,0.892490562826782,0.0928326779374912,0.4480502300769796
+giroux2022,pooled,pooled,zs__pseudo,B cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3030.0,0.2949745579407295,0.20731926371820372,0.5664901241699054,0.5093197269981107,0.1437838697463161,0.3227368268138313,conditions_pooled_pseudo.npz@e35caf80,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b,0.2949745579407295,0.5664901241699054,0.1437838697463161,0.3227368268138313
+giroux2022,pooled,pooled,zs__pseudo,B cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3030.0,0.09666524103313066,0.12745260414117054,0.5970655695704886,0.5488867864154536,0.01681194420151433,0.13953368608867645,conditions_pooled_pseudo.npz@e35caf80,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b,0.0966652410331306,0.5970655695704886,0.0168119442015143,0.1395336860886764
+giroux2022,pooled,pooled,zs__pseudo,Monocyte,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",3034.0,0.30442463918729074,0.2575080366607029,0.7075010104312217,0.6042497806126143,0.06634278555659517,0.36868097239569425,conditions_pooled_pseudo.npz@e35caf80,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b,0.3044246391872907,0.7075010104312217,0.0663427855565951,0.3686809723956942
+giroux2022,pooled,pooled,zs__pseudo,Monocyte,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",3034.0,0.19285303130847672,0.20962507832622662,0.7688850796294159,0.6922211130696988,0.037120713823352386,0.22071420266958106,conditions_pooled_pseudo.npz@e35caf80,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b,0.1928530313084767,0.7688850796294159,0.0371207138233523,0.220714202669581
+giroux2022,pooled,pooled,zs__pseudo,NK cell,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",2931.0,0.43980359636479194,0.3570266038564364,0.742968324166966,0.7201503576385441,0.25513437897836055,0.3792827019057766,conditions_pooled_pseudo.npz@e35caf80,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b,0.4398035963647919,0.742968324166966,0.2551343789783605,0.3792827019057766
+giroux2022,pooled,pooled,zs__pseudo,NK cell,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",2931.0,0.2394659296052213,0.2641312768621135,0.7131048131805501,0.7115149788437806,0.12230798535755626,0.21847040606330193,conditions_pooled_pseudo.npz@e35caf80,e35caf80738a4e67787f14193fc315213a9298a23a7e371dc557b95ce183695b,0.2394659296052213,0.7131048131805501,0.1223079853575562,0.2184704060633019
+giroux2022,pooled,pooled,zs__raw,T cell,mean_cp10k,"Zero-shot, real bulk",2886.0,0.49026662465329873,0.3507012093331978,0.5864764503055301,0.5137046185745339,0.24638579273310712,0.5522777895340848,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.4902666246532987,0.5864764503055301,0.2463857927331071,0.5522777895340848
+giroux2022,pooled,pooled,zs__raw,T cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",2886.0,0.3833201368066237,0.3324143115214483,0.6077451868574512,0.5406572385492411,0.1752555710772293,0.4232438515504348,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.3833201368066237,0.6077451868574512,0.1752555710772293,0.4232438515504348
+giroux2022,pooled,pooled,zs__raw,B cell,mean_cp10k,"Zero-shot, real bulk",3030.0,0.17777341595765428,0.08475843252416453,0.48025603753384744,0.4160595867097935,0.06646241398086211,0.25271863399753614,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.1777734159576542,0.4802560375338474,0.0664624139808621,0.2527186339975361
+giroux2022,pooled,pooled,zs__raw,B cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3030.0,0.06325615216600755,0.07808087396246247,0.4644022343428308,0.4073840878062634,0.004565241918326917,0.1275749652955909,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.0632561521660075,0.4644022343428308,0.0045652419183269,0.1275749652955909
+giroux2022,pooled,pooled,zs__raw,Monocyte,mean_cp10k,"Zero-shot, real bulk",3034.0,0.33793815873051786,0.23809564614319748,0.6794468550874515,0.5822843980734358,0.21303060397326687,0.27627782904285014,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.3379381587305178,0.6794468550874515,0.2130306039732668,0.2762778290428501
+giroux2022,pooled,pooled,zs__raw,Monocyte,pseudobulk_log1p_cpm,"Zero-shot, real bulk",3034.0,0.1691510359339708,0.2292103301020472,0.6731923266540611,0.5877699132162567,0.11733377593588622,0.1233663894787652,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.1691510359339708,0.6731923266540611,0.1173337759358862,0.1233663894787652
+giroux2022,pooled,pooled,zs__raw,NK cell,mean_cp10k,"Zero-shot, real bulk",2931.0,0.33013743418366354,0.2193280895790145,0.554884628817489,0.4715372337505029,0.23565058664900462,0.25316979885634644,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.3301374341836635,0.554884628817489,0.2356505866490046,0.2531697988563464
+giroux2022,pooled,pooled,zs__raw,NK cell,pseudobulk_log1p_cpm,"Zero-shot, real bulk",2931.0,0.17545491819447598,0.17392764025721072,0.5368131432639086,0.48425117234266635,0.13339956001211722,0.11866472793072927,conditions_pooled_raw.npz@1370617c,1370617c5149f3073a520c74683a65ad36dc1052c53ce56df6fe9e9d2a868015,0.1754549181944759,0.5368131432639086,0.1333995600121172,0.1186647279307292
+giroux2022,pooled,pooled,pseudo_full__cal,mean4,mean_cp10k,sc-only fine-tune (+ calibration),,0.3441273714068387,0.20432479390870267,0.5643395657145305,0.4710110292358014,0.17515529453855735,0.36844057537190744,,,0.3441273714068387,0.5643395657145305,0.17515529453855733,0.36844057537190744
+giroux2022,pooled,pooled,pseudo_full__cal,mean4,pseudobulk_log1p_cpm,sc-only fine-tune (+ calibration),,0.27273338261136737,0.23074598111095962,0.5561377673186712,0.4935079501382793,0.1691908145437675,0.2417834955070405,,,0.27273338261136726,0.5561377673186712,0.16919081454376747,0.24178349550704048
+giroux2022,pooled,pooled,pseudo_full__raw,mean4,mean_cp10k,"sc-only fine-tune, real bulk",,0.398147551245955,0.3547944561891905,0.5752659929360795,0.4958964592770665,0.3194546947956906,0.26536940110549956,,,0.39814755124595497,0.5752659929360795,0.31945469479569055,0.2653694011054995
+giroux2022,pooled,pooled,pseudo_full__raw,mean4,pseudobulk_log1p_cpm,"sc-only fine-tune, real bulk",,0.2632370258740352,0.2653804446081254,0.5705382227795629,0.5050156029786069,0.20305893910971162,0.18165834232700864,,,0.2632370258740352,0.5705382227795629,0.2030589391097116,0.18165834232700862
+giroux2022,pooled,pooled,real_lora__raw,mean4,mean_cp10k,"LoRA, all training pairs",,0.46094848304079133,0.37861361939512955,0.5752659929360795,0.4958964592770665,0.3230347269696575,0.3820228256421402,,,0.46094848304079133,0.5752659929360795,0.3230347269696575,0.3820228256421402
+giroux2022,pooled,pooled,real_lora__raw,mean4,pseudobulk_log1p_cpm,"LoRA, all training pairs",,0.30196125604871066,0.2982741631781147,0.5705382227795629,0.5050156029786069,0.21501540311197326,0.23316256881086786,,,0.30196125604871066,0.5705382227795629,0.21501540311197323,0.23316256881086786
+giroux2022,pooled,pooled,zs__cal,mean4,mean_cp10k,Zero-shot + calibration,,0.26862025176520443,0.16882835772931584,0.5643395657145305,0.4710110292358014,0.13339193412452294,0.28873054163301676,,,0.2686202517652044,0.5643395657145305,0.13339193412452288,0.2887305416330167
+giroux2022,pooled,pooled,zs__cal,mean4,pseudobulk_log1p_cpm,Zero-shot + calibration,,0.15756778927141027,0.15276576085070198,0.5561377673186712,0.4935079501382793,0.0789288156287501,0.1670253472596116,,,0.15756778927141024,0.5561377673186712,0.07892881562875007,0.16702534725961157
+giroux2022,pooled,pooled,zs__pseudo,mean4,mean_cp10k,"Zero-shot, sc pseudobulk input (reference)",,0.40995286106415924,0.32888473065692236,0.7202428536715684,0.6744101540595969,0.14426653827662855,0.42901838949492455,,,0.40995286106415924,0.7202428536715684,0.14426653827662853,0.42901838949492443
+giroux2022,pooled,pooled,zs__pseudo,mean4,pseudobulk_log1p_cpm,"Zero-shot, sc pseudobulk input (reference)",,0.2415750541786002,0.2565516224488557,0.7428865063018091,0.7088051478658659,0.06726833032997856,0.25669213122463475,,,0.24157505417860015,0.7428865063018091,0.0672683303299785,0.2566921312246347
+giroux2022,pooled,pooled,zs__raw,mean4,mean_cp10k,"Zero-shot, real bulk",,0.33402890838128363,0.2232208443948936,0.5752659929360795,0.4958964592770665,0.19038234933406017,0.3336110128577044,,,0.3340289083812835,0.5752659929360795,0.19038234933406015,0.33361101285770434
+giroux2022,pooled,pooled,zs__raw,mean4,pseudobulk_log1p_cpm,"Zero-shot, real bulk",,0.1977955607752695,0.20340828896079216,0.5705382227795629,0.5050156029786069,0.10763853723588991,0.19821248356388005,,,0.19779556077526947,0.5705382227795629,0.1076385372358899,0.19821248356388005

paper-releases/pbisc-diffusion/updates/20261002T085943Z-deck-restructure-contrast-metrics-zeroshot-len/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/giroux2022/pooled/deg_limma.csv

@@ -0,0 +1,91 @@
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+giroux2022,pooled,pooled,pseudo_full__raw,T cell,welch,True,True,0,0.0,50,0,274,0,5295,4327,4325,0.0,3,3.0,8,8,5471,5273,0.07585814526834819,conditions_pooled_raw.npz@1370617c
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+giroux2022,pooled,pooled,pseudo_full__raw,Monocyte,welch,True,True,0,0.0,1,0,1,0,5239,3899,3897,0.0,1,1.0,8,8,5471,5218,0.0015331544653123803,conditions_pooled_raw.npz@1370617c
+giroux2022,pooled,pooled,pseudo_full__raw,NK cell,welch,True,True,0,0.0,50,0,62,0,5103,3817,3815,0.0,1,1.0,8,8,5471,5083,0.07869368483179225,conditions_pooled_raw.npz@1370617c
+giroux2022,pooled,pooled,pseudo_full__raw,DC,welch,True,True,0,0.0,0,0,0,0,4914,3300,3297,0.0,0,0.0,8,8,5471,4896,0.0,conditions_pooled_raw.npz@1370617c
+giroux2022,pooled,pooled,real_lora__raw,T cell,welch,True,True,5,5.0,50,50,274,77,5295,3821,3819,0.6546216286986122,3,3.0,8,8,5471,5273,0.07585814526834819,conditions_pooled_raw.npz@1370617c
+giroux2022,pooled,pooled,real_lora__raw,B cell,welch,True,True,0,0.0,0,0,0,0,5087,2983,2982,0.0,0,0.0,8,8,5471,5068,0.0,conditions_pooled_raw.npz@1370617c
+giroux2022,pooled,pooled,real_lora__raw,Monocyte,welch,True,True,0,0.0,1,0,1,0,5239,3508,3507,0.0,1,1.0,8,8,5471,5218,0.0015331544653123803,conditions_pooled_raw.npz@1370617c
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