Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3363515c7ce593df/immicro-healthy-fold1-n5-score.json +143 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/a8ead926beae1f96/support.json +73 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/d5eef391d92c9a51/ye2026_sepsis-disease-draw2.json +628 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/dd0f20f8fc40e1a2/donor_deg_summary.csv +6 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3363515c7ce593df/immicro-healthy-fold1-n5-score.json
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{
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"state": "completed",
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"signature": "5a36d4758533c807af6a43a91ef0cfe7b9616831d4877be562851e01adbb609b",
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"outputs": [
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold1/n5/score/summary.json",
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"bytes": 23493,
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},
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold1/n5/statistics/status.json",
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"bytes": 358,
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"sha256": "82328094470e907a45c881a6a45c62376c21773d16643c8e204b3821bb104abb"
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold1/n5/statistics/donor_bootstrap_2000.csv",
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"bytes": 13176,
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},
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold1/n5/extras/immicro/strict/manifest.json",
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"bytes": 3565,
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"mtime_ns": 1791816183598133123,
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"sha256": "e90543d4854a637525ad5f48e4df844320e01451fdfd9247e2670426fefb3f20"
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},
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{
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold1/n5/contrast/immicro/strict/manifest.json",
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"bytes": 400,
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"mtime_ns": 1791816183858373651,
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"sha256": "80fe7449fe686067633765cea457cabec21109effbce04502944b975801be7e1"
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}
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],
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"seconds": 404.1988006790002,
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"at": "2026-10-12T14:43:04.274660+00:00",
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"execution": {
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"host": "spark-fa6b",
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"map_host": null,
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"map_path": null,
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"map_sha256": null,
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"argv": [
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"/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
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| 45 |
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"-u",
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| 46 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
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| 47 |
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"--support-manifest",
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| 48 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/immicro/healthy/fold1/n5/support.json",
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| 49 |
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"--out",
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| 50 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold1/n5",
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"--action",
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| 52 |
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"all",
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| 53 |
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"--threads",
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"4",
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| 55 |
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"--arm",
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| 56 |
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"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n5/lora.npz",
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| 57 |
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"--arm",
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| 58 |
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"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n5/pairedcal.npz",
|
| 59 |
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"--arm",
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| 60 |
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"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n5/scsemi.npz",
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| 61 |
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"--arm",
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| 62 |
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"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/immicro/raw.npz",
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| 63 |
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"--arm",
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| 64 |
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"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/immicro/refcal.npz"
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],
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| 66 |
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"command": [
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| 67 |
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"systemd-run",
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| 68 |
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"--user",
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| 69 |
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"--wait",
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| 70 |
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"--collect",
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"--pipe",
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"--quiet",
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| 73 |
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"--unit=pbisc-strict-immicro-healthy-fold1-n5-score-44882-1791815780075236361",
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| 74 |
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"--slice=app.slice",
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| 75 |
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"--working-directory=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012",
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"--expand-environment=no",
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| 77 |
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"-p",
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| 78 |
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"MemoryMax=32G",
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| 79 |
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"-p",
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| 80 |
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"MemorySwapMax=0",
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| 81 |
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"-p",
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| 82 |
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"OOMPolicy=kill",
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| 83 |
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"-p",
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| 84 |
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"OOMScoreAdjust=500",
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| 85 |
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"-p",
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| 86 |
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"CPUQuota=400%",
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| 87 |
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"/usr/bin/env",
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| 88 |
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"CUDA_VISIBLE_DEVICES=",
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| 89 |
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"PATH=/home/sj_server_1/.local/bin:/home/sj_server_1/miniforge3/bin:/usr/local/bin:/usr/bin:/bin",
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| 90 |
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"PYTHONDONTWRITEBYTECODE=1",
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| 91 |
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"PYTHONUNBUFFERED=1",
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| 92 |
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"OMP_NUM_THREADS=4",
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| 93 |
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"OPENBLAS_NUM_THREADS=4",
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| 94 |
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"MKL_NUM_THREADS=4",
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| 95 |
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"NUMBA_NUM_THREADS=4",
|
| 96 |
+
"/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
|
| 97 |
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"-u",
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| 98 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 99 |
+
"--support-manifest",
|
| 100 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/immicro/healthy/fold1/n5/support.json",
|
| 101 |
+
"--out",
|
| 102 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold1/n5",
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| 103 |
+
"--action",
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| 104 |
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"all",
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| 105 |
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"--threads",
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| 106 |
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"4",
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| 107 |
+
"--arm",
|
| 108 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n5/lora.npz",
|
| 109 |
+
"--arm",
|
| 110 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n5/pairedcal.npz",
|
| 111 |
+
"--arm",
|
| 112 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n5/scsemi.npz",
|
| 113 |
+
"--arm",
|
| 114 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/immicro/raw.npz",
|
| 115 |
+
"--arm",
|
| 116 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/immicro/refcal.npz"
|
| 117 |
+
]
|
| 118 |
+
},
|
| 119 |
+
"argv": [
|
| 120 |
+
"/home/sj_server_1/miniforge3/envs/cxg_corpus/bin/python",
|
| 121 |
+
"-u",
|
| 122 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 123 |
+
"--support-manifest",
|
| 124 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/immicro/healthy/fold1/n5/support.json",
|
| 125 |
+
"--out",
|
| 126 |
+
"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/immicro/healthy/fold1/n5",
|
| 127 |
+
"--action",
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| 128 |
+
"all",
|
| 129 |
+
"--threads",
|
| 130 |
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"4",
|
| 131 |
+
"--arm",
|
| 132 |
+
"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n5/lora.npz",
|
| 133 |
+
"--arm",
|
| 134 |
+
"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n5/pairedcal.npz",
|
| 135 |
+
"--arm",
|
| 136 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/immicro/healthy/fold1/n5/scsemi.npz",
|
| 137 |
+
"--arm",
|
| 138 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/immicro/raw.npz",
|
| 139 |
+
"--arm",
|
| 140 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/immicro/refcal.npz"
|
| 141 |
+
],
|
| 142 |
+
"previous_outputs": null
|
| 143 |
+
}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/a8ead926beae1f96/support.json
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| 1 |
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{
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| 2 |
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"schema": "pbisc.paper.strict-support.v1",
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| 3 |
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"cohort": "immicro",
|
| 4 |
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"design": "healthy_outerfold",
|
| 5 |
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"unit": "fold0_n5",
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| 6 |
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"n_pairs": 5,
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| 7 |
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"train_sample_ids": [
|
| 8 |
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"HS40",
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| 9 |
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"HS30",
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| 10 |
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"HS53",
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| 11 |
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"HS39",
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| 12 |
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"HS109"
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| 13 |
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],
|
| 14 |
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"train_donor_ids": [
|
| 15 |
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"HS40",
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| 16 |
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"HS30",
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| 17 |
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"HS53",
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| 18 |
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"HS39",
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| 19 |
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"HS109"
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| 20 |
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],
|
| 21 |
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"test_sample_ids": [
|
| 22 |
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"HS3",
|
| 23 |
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"HS6",
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| 24 |
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"HS7",
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| 25 |
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"HS13",
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| 26 |
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"HS18",
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| 27 |
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"HS31",
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| 28 |
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"HS34",
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| 29 |
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"HS37",
|
| 30 |
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"HS38",
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| 31 |
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"HS52",
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| 32 |
+
"HS58",
|
| 33 |
+
"HS60",
|
| 34 |
+
"HS66",
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| 35 |
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"HS81",
|
| 36 |
+
"HS82",
|
| 37 |
+
"HS83",
|
| 38 |
+
"HS85",
|
| 39 |
+
"HS86",
|
| 40 |
+
"HS95",
|
| 41 |
+
"HS98",
|
| 42 |
+
"HS101",
|
| 43 |
+
"HS107"
|
| 44 |
+
],
|
| 45 |
+
"test_donor_ids": [
|
| 46 |
+
"HS3",
|
| 47 |
+
"HS6",
|
| 48 |
+
"HS7",
|
| 49 |
+
"HS13",
|
| 50 |
+
"HS18",
|
| 51 |
+
"HS31",
|
| 52 |
+
"HS34",
|
| 53 |
+
"HS37",
|
| 54 |
+
"HS38",
|
| 55 |
+
"HS52",
|
| 56 |
+
"HS58",
|
| 57 |
+
"HS60",
|
| 58 |
+
"HS66",
|
| 59 |
+
"HS81",
|
| 60 |
+
"HS82",
|
| 61 |
+
"HS83",
|
| 62 |
+
"HS85",
|
| 63 |
+
"HS86",
|
| 64 |
+
"HS95",
|
| 65 |
+
"HS98",
|
| 66 |
+
"HS101",
|
| 67 |
+
"HS107"
|
| 68 |
+
],
|
| 69 |
+
"excluded_sample_ids": [],
|
| 70 |
+
"seed": 20261012,
|
| 71 |
+
"selection_audit": [],
|
| 72 |
+
"sha256": "85c04462a9c768c205fc0adfcb0a40e5f94f504a93d6d822944387bc055b65d4"
|
| 73 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/d5eef391d92c9a51/ye2026_sepsis-disease-draw2.json
ADDED
|
@@ -0,0 +1,628 @@
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|
| 1 |
+
{
|
| 2 |
+
"state": "completed",
|
| 3 |
+
"at": "2026-10-15T11:33:34.081926+00:00",
|
| 4 |
+
"kind": "canonical_full_adoption",
|
| 5 |
+
"canonical_receipt": {
|
| 6 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/receipts/ye2026_sepsis-disease-draw2-score.json",
|
| 7 |
+
"sha256": "3ecc6baeaba2a0b5853d8c384a6fb3170d73d94b2741202dceabba4d831942c6",
|
| 8 |
+
"bytes": 7752
|
| 9 |
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},
|
| 10 |
+
"support_sha256": "ea331f967a3a212b91cd144bd8ba62cea3cbfe3bdcc9e77268e190757327b0e2",
|
| 11 |
+
"outputs": [
|
| 12 |
+
{
|
| 13 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/contrast/ye2026_sepsis/strict/cat.csv",
|
| 14 |
+
"sha256": "40c2fa2280edc41e9dc6df6bee6381e1d43c15ec35fc825966e7505b8de0add3",
|
| 15 |
+
"bytes": 43852
|
| 16 |
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},
|
| 17 |
+
{
|
| 18 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/contrast/ye2026_sepsis/strict/ceiling.csv",
|
| 19 |
+
"sha256": "d91a3bdb62c7aa485f6b151edf92c659423784c42e1b279b89b24d4a1e94bb68",
|
| 20 |
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"bytes": 20228
|
| 21 |
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},
|
| 22 |
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{
|
| 23 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/contrast/ye2026_sepsis/strict/contrast.csv",
|
| 24 |
+
"sha256": "c8c02f4a6a506a092fe05feb7e1ecd8648e3e64ab2e782c357ff40c6606a41b3",
|
| 25 |
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"bytes": 17238
|
| 26 |
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},
|
| 27 |
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{
|
| 28 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/contrast/ye2026_sepsis/strict/deg_limma.csv",
|
| 29 |
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"sha256": "97f1700feffd60c2448ec94076c4e52dcf865c3cdaf66297223c906f53720b0e",
|
| 30 |
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"bytes": 14088
|
| 31 |
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},
|
| 32 |
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{
|
| 33 |
+
"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/contrast/ye2026_sepsis/strict/headline.csv",
|
| 34 |
+
"sha256": "ab57aaa5e6228a6930d08004d8a6f67d42147a184426a2fdd6e3fd37d0d0358b",
|
| 35 |
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"bytes": 4658
|
| 36 |
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},
|
| 37 |
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{
|
| 38 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/contrast/ye2026_sepsis/strict/limma/jobs.csv",
|
| 39 |
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"sha256": "7a8dfbcffdc7901ba025290db86c46cafd64823587fc2bca5505429b276c25a9",
|
| 40 |
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"bytes": 8584
|
| 41 |
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|
| 42 |
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{
|
| 43 |
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/ye2026_sepsis/disease/draw2/contrast/ye2026_sepsis/strict/limma/limma_status.csv",
|
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/dd0f20f8fc40e1a2/donor_deg_summary.csv
ADDED
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@@ -0,0 +1,6 @@
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| 1 |
+
arm,celltype,status,observed_status,generated_status,n_case_donors_observed,n_control_donors_observed,n_case_donors_generated,n_control_donors_generated,method_observed,method_generated,reason_observed,reason_generated,reason_fit,reason_population,top50_overlap_count,observed_top50_size,generated_top50_size
|
| 2 |
+
lora,T cell,ok,ok,ok,2,2,2,2,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,0,0
|
| 3 |
+
lora,B cell,ok,ok,ok,2,2,2,2,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,0,1
|
| 4 |
+
lora,Monocyte,ok,ok,ok,2,2,2,2,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,0,0
|
| 5 |
+
lora,NK cell,ok,ok,ok,2,2,2,2,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,0,0
|
| 6 |
+
lora,DC,ok,ok,ok,2,2,2,2,edgeR_TMM_limma_voom,edgeR_TMM_limma_voom,,,,,0,0,0
|