Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot4/SPLIT.json +125 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot4/state_types.tsv +29 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot4_full/SPLIT.json +126 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot4_full/state_types.tsv +29 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot4/SPLIT.json
ADDED
|
@@ -0,0 +1,125 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset": "ye2026_sepsis",
|
| 3 |
+
"kind": "fewshot",
|
| 4 |
+
"idx": 4,
|
| 5 |
+
"reference": [
|
| 6 |
+
"Abd-S102",
|
| 7 |
+
"IC23",
|
| 8 |
+
"Res-PS22",
|
| 9 |
+
"Skin-S142",
|
| 10 |
+
"Skin-S46"
|
| 11 |
+
],
|
| 12 |
+
"mixture": [
|
| 13 |
+
"Abd-PS04",
|
| 14 |
+
"Abd-PS05",
|
| 15 |
+
"Abd-PS07",
|
| 16 |
+
"Abd-PS19",
|
| 17 |
+
"Abd-PS20",
|
| 18 |
+
"Abd-PS23",
|
| 19 |
+
"Abd-PS27",
|
| 20 |
+
"Abd-S103",
|
| 21 |
+
"Abd-S120",
|
| 22 |
+
"Abd-S123",
|
| 23 |
+
"Abd-S156",
|
| 24 |
+
"Abd-S39",
|
| 25 |
+
"Abd-S42",
|
| 26 |
+
"Abd-S47",
|
| 27 |
+
"Abd-S51",
|
| 28 |
+
"Abd-S54",
|
| 29 |
+
"Abd-S57",
|
| 30 |
+
"Abd-S66",
|
| 31 |
+
"Abd-S79",
|
| 32 |
+
"Abd-S83",
|
| 33 |
+
"Abd-S98",
|
| 34 |
+
"HC01",
|
| 35 |
+
"HC05",
|
| 36 |
+
"HC07",
|
| 37 |
+
"HC09",
|
| 38 |
+
"HC12",
|
| 39 |
+
"HC13",
|
| 40 |
+
"HC16",
|
| 41 |
+
"IC10",
|
| 42 |
+
"IC15",
|
| 43 |
+
"IC16",
|
| 44 |
+
"IC19",
|
| 45 |
+
"IC22",
|
| 46 |
+
"PHC01",
|
| 47 |
+
"PHC02",
|
| 48 |
+
"PHC03",
|
| 49 |
+
"PHC05",
|
| 50 |
+
"PIC01",
|
| 51 |
+
"PIC02",
|
| 52 |
+
"PIC04",
|
| 53 |
+
"PIC05",
|
| 54 |
+
"Res-PS02",
|
| 55 |
+
"Res-PS03",
|
| 56 |
+
"Res-PS12",
|
| 57 |
+
"Res-PS16",
|
| 58 |
+
"Res-PS21",
|
| 59 |
+
"Res-PS25",
|
| 60 |
+
"Res-PS26",
|
| 61 |
+
"Res-S10",
|
| 62 |
+
"Res-S125",
|
| 63 |
+
"Res-S127",
|
| 64 |
+
"Res-S136",
|
| 65 |
+
"Res-S139",
|
| 66 |
+
"Res-S146",
|
| 67 |
+
"Res-S149",
|
| 68 |
+
"Res-S150",
|
| 69 |
+
"Res-S164",
|
| 70 |
+
"Res-S166",
|
| 71 |
+
"Res-S174",
|
| 72 |
+
"Res-S177",
|
| 73 |
+
"Res-S184",
|
| 74 |
+
"Res-S19",
|
| 75 |
+
"Res-S26",
|
| 76 |
+
"Res-S40",
|
| 77 |
+
"Res-S77",
|
| 78 |
+
"Res-S87",
|
| 79 |
+
"Skin-S140",
|
| 80 |
+
"Skin-S152",
|
| 81 |
+
"Skin-S38",
|
| 82 |
+
"Skin-S43",
|
| 83 |
+
"Skin-S52",
|
| 84 |
+
"Skin-S74",
|
| 85 |
+
"Uri-S134",
|
| 86 |
+
"Uri-S147",
|
| 87 |
+
"Uri-S157",
|
| 88 |
+
"Uri-S20",
|
| 89 |
+
"Uri-S93"
|
| 90 |
+
],
|
| 91 |
+
"train_donors": [
|
| 92 |
+
"Abd-S102",
|
| 93 |
+
"IC23",
|
| 94 |
+
"Res-PS22",
|
| 95 |
+
"Skin-S142",
|
| 96 |
+
"Skin-S46"
|
| 97 |
+
],
|
| 98 |
+
"run_json_check": true,
|
| 99 |
+
"n_reference_samples": 5,
|
| 100 |
+
"n_mixture_samples": 77,
|
| 101 |
+
"reference_cells": 44863,
|
| 102 |
+
"states": 28,
|
| 103 |
+
"states_merged_minor": 2,
|
| 104 |
+
"types": [
|
| 105 |
+
"B cell",
|
| 106 |
+
"DC",
|
| 107 |
+
"Monocyte",
|
| 108 |
+
"NK cell",
|
| 109 |
+
"Other",
|
| 110 |
+
"T cell"
|
| 111 |
+
],
|
| 112 |
+
"missing_types": [],
|
| 113 |
+
"bp_axis_genes": 5959,
|
| 114 |
+
"genes_kept": 5718,
|
| 115 |
+
"genes_dropped_not_bulk_valid": 0,
|
| 116 |
+
"genes_dropped_zero_reference": 241,
|
| 117 |
+
"aggregates_sha256": "d38afdb00f5616ada109babfb6fc0f16bc37b33a434807d263d0163895e1f9de",
|
| 118 |
+
"files": {
|
| 119 |
+
"reference.tsv.gz": "7fe2c3b38b5c15e8ef6edfaffa176a1633e99b3ac62b2cfd01ea7cb8ea046efb",
|
| 120 |
+
"state_types.tsv": "c36cf9da3ab2cebf1b13816dd942a42037efbd27c30dcb69772a389ab5689d3e",
|
| 121 |
+
"mixture.tsv.gz": "e30b7df395358b89bcae1f1be35103d4dcce7773310e01ccf3dc4f921b6dc18a"
|
| 122 |
+
},
|
| 123 |
+
"tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
|
| 124 |
+
"common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
|
| 125 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot4/state_types.tsv
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
state type n_cells
|
| 2 |
+
B cell|Effector B cell B cell 738
|
| 3 |
+
B cell|Memory B cell B cell 2019
|
| 4 |
+
B cell|Naive B cell B cell 2753
|
| 5 |
+
B cell|Plasma cell B cell 374
|
| 6 |
+
B cell|Transitional B cell B cell 1249
|
| 7 |
+
DC|cDC2 DC 157
|
| 8 |
+
DC|pDC DC 94
|
| 9 |
+
Monocyte|CD14 monocyte Monocyte 8822
|
| 10 |
+
Monocyte|CD16 monocyte Monocyte 1819
|
| 11 |
+
Monocyte|Intermediate monocyte Monocyte 1660
|
| 12 |
+
NK cell|CD56bright NK cell NK cell 342
|
| 13 |
+
NK cell|CD56dim NK cell NK cell 1516
|
| 14 |
+
NK cell|Proliferating NK cell NK cell 589
|
| 15 |
+
Other|Erythrocyte Other 753
|
| 16 |
+
Other|ILC Other 338
|
| 17 |
+
Other|Platelet Other 1172
|
| 18 |
+
Other|Progenitor cell Other 107
|
| 19 |
+
T cell|CD8aa T cell 1345
|
| 20 |
+
T cell|DN T cell T cell 825
|
| 21 |
+
T cell|MAIT T cell 383
|
| 22 |
+
T cell|Memory CD4 T cell T cell 6169
|
| 23 |
+
T cell|Memory CD8 T cell T cell 3108
|
| 24 |
+
T cell|Naive CD4 T cell T cell 3410
|
| 25 |
+
T cell|Naive CD8 T cell T cell 1941
|
| 26 |
+
T cell|Proliferating T cell T cell 260
|
| 27 |
+
T cell|Treg T cell 1045
|
| 28 |
+
T cell|gdT T cell 1857
|
| 29 |
+
DC|minor DC 18
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot4_full/SPLIT.json
ADDED
|
@@ -0,0 +1,126 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset": "ye2026_sepsis",
|
| 3 |
+
"kind": "fewshot",
|
| 4 |
+
"idx": 4,
|
| 5 |
+
"reference": [
|
| 6 |
+
"Abd-S102",
|
| 7 |
+
"IC23",
|
| 8 |
+
"Res-PS22",
|
| 9 |
+
"Skin-S142",
|
| 10 |
+
"Skin-S46"
|
| 11 |
+
],
|
| 12 |
+
"mixture": [
|
| 13 |
+
"Abd-PS04",
|
| 14 |
+
"Abd-PS05",
|
| 15 |
+
"Abd-PS07",
|
| 16 |
+
"Abd-PS19",
|
| 17 |
+
"Abd-PS20",
|
| 18 |
+
"Abd-PS23",
|
| 19 |
+
"Abd-PS27",
|
| 20 |
+
"Abd-S103",
|
| 21 |
+
"Abd-S120",
|
| 22 |
+
"Abd-S123",
|
| 23 |
+
"Abd-S156",
|
| 24 |
+
"Abd-S39",
|
| 25 |
+
"Abd-S42",
|
| 26 |
+
"Abd-S47",
|
| 27 |
+
"Abd-S51",
|
| 28 |
+
"Abd-S54",
|
| 29 |
+
"Abd-S57",
|
| 30 |
+
"Abd-S66",
|
| 31 |
+
"Abd-S79",
|
| 32 |
+
"Abd-S83",
|
| 33 |
+
"Abd-S98",
|
| 34 |
+
"HC01",
|
| 35 |
+
"HC05",
|
| 36 |
+
"HC07",
|
| 37 |
+
"HC09",
|
| 38 |
+
"HC12",
|
| 39 |
+
"HC13",
|
| 40 |
+
"HC16",
|
| 41 |
+
"IC10",
|
| 42 |
+
"IC15",
|
| 43 |
+
"IC16",
|
| 44 |
+
"IC19",
|
| 45 |
+
"IC22",
|
| 46 |
+
"PHC01",
|
| 47 |
+
"PHC02",
|
| 48 |
+
"PHC03",
|
| 49 |
+
"PHC05",
|
| 50 |
+
"PIC01",
|
| 51 |
+
"PIC02",
|
| 52 |
+
"PIC04",
|
| 53 |
+
"PIC05",
|
| 54 |
+
"Res-PS02",
|
| 55 |
+
"Res-PS03",
|
| 56 |
+
"Res-PS12",
|
| 57 |
+
"Res-PS16",
|
| 58 |
+
"Res-PS21",
|
| 59 |
+
"Res-PS25",
|
| 60 |
+
"Res-PS26",
|
| 61 |
+
"Res-S10",
|
| 62 |
+
"Res-S125",
|
| 63 |
+
"Res-S127",
|
| 64 |
+
"Res-S136",
|
| 65 |
+
"Res-S139",
|
| 66 |
+
"Res-S146",
|
| 67 |
+
"Res-S149",
|
| 68 |
+
"Res-S150",
|
| 69 |
+
"Res-S164",
|
| 70 |
+
"Res-S166",
|
| 71 |
+
"Res-S174",
|
| 72 |
+
"Res-S177",
|
| 73 |
+
"Res-S184",
|
| 74 |
+
"Res-S19",
|
| 75 |
+
"Res-S26",
|
| 76 |
+
"Res-S40",
|
| 77 |
+
"Res-S77",
|
| 78 |
+
"Res-S87",
|
| 79 |
+
"Skin-S140",
|
| 80 |
+
"Skin-S152",
|
| 81 |
+
"Skin-S38",
|
| 82 |
+
"Skin-S43",
|
| 83 |
+
"Skin-S52",
|
| 84 |
+
"Skin-S74",
|
| 85 |
+
"Uri-S134",
|
| 86 |
+
"Uri-S147",
|
| 87 |
+
"Uri-S157",
|
| 88 |
+
"Uri-S20",
|
| 89 |
+
"Uri-S93"
|
| 90 |
+
],
|
| 91 |
+
"train_donors": [
|
| 92 |
+
"Abd-S102",
|
| 93 |
+
"IC23",
|
| 94 |
+
"Res-PS22",
|
| 95 |
+
"Skin-S142",
|
| 96 |
+
"Skin-S46"
|
| 97 |
+
],
|
| 98 |
+
"run_json_check": true,
|
| 99 |
+
"n_reference_samples": 5,
|
| 100 |
+
"n_mixture_samples": 77,
|
| 101 |
+
"reference_cells": 44863,
|
| 102 |
+
"states": 28,
|
| 103 |
+
"states_merged_minor": 2,
|
| 104 |
+
"types": [
|
| 105 |
+
"B cell",
|
| 106 |
+
"DC",
|
| 107 |
+
"Monocyte",
|
| 108 |
+
"NK cell",
|
| 109 |
+
"Other",
|
| 110 |
+
"T cell"
|
| 111 |
+
],
|
| 112 |
+
"missing_types": [],
|
| 113 |
+
"bp_axis_genes": 18787,
|
| 114 |
+
"genes_kept": 16072,
|
| 115 |
+
"genes_dropped_not_bulk_valid": 0,
|
| 116 |
+
"genes_dropped_zero_reference": 2715,
|
| 117 |
+
"gene_mode": "full",
|
| 118 |
+
"aggregates_sha256": "1c866cbb8990359c870f46804e55cbae4a38cb82b5e0bf5f47bd9a552ada966a",
|
| 119 |
+
"files": {
|
| 120 |
+
"reference.tsv.gz": "c8791b1e079b086eed8aee39c25814ea775a4ab0506c0c44201882b82f4ceb65",
|
| 121 |
+
"state_types.tsv": "c36cf9da3ab2cebf1b13816dd942a42037efbd27c30dcb69772a389ab5689d3e",
|
| 122 |
+
"mixture.tsv.gz": "de072de51533ebf171385b0e783d31e6449d2d791b0a951b81367f834adfabdd"
|
| 123 |
+
},
|
| 124 |
+
"tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
|
| 125 |
+
"common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
|
| 126 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/ye2026_sepsis/fewshot4_full/state_types.tsv
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
state type n_cells
|
| 2 |
+
B cell|Effector B cell B cell 738
|
| 3 |
+
B cell|Memory B cell B cell 2019
|
| 4 |
+
B cell|Naive B cell B cell 2753
|
| 5 |
+
B cell|Plasma cell B cell 374
|
| 6 |
+
B cell|Transitional B cell B cell 1249
|
| 7 |
+
DC|cDC2 DC 157
|
| 8 |
+
DC|pDC DC 94
|
| 9 |
+
Monocyte|CD14 monocyte Monocyte 8822
|
| 10 |
+
Monocyte|CD16 monocyte Monocyte 1819
|
| 11 |
+
Monocyte|Intermediate monocyte Monocyte 1660
|
| 12 |
+
NK cell|CD56bright NK cell NK cell 342
|
| 13 |
+
NK cell|CD56dim NK cell NK cell 1516
|
| 14 |
+
NK cell|Proliferating NK cell NK cell 589
|
| 15 |
+
Other|Erythrocyte Other 753
|
| 16 |
+
Other|ILC Other 338
|
| 17 |
+
Other|Platelet Other 1172
|
| 18 |
+
Other|Progenitor cell Other 107
|
| 19 |
+
T cell|CD8aa T cell 1345
|
| 20 |
+
T cell|DN T cell T cell 825
|
| 21 |
+
T cell|MAIT T cell 383
|
| 22 |
+
T cell|Memory CD4 T cell T cell 6169
|
| 23 |
+
T cell|Memory CD8 T cell T cell 3108
|
| 24 |
+
T cell|Naive CD4 T cell T cell 3410
|
| 25 |
+
T cell|Naive CD8 T cell T cell 1941
|
| 26 |
+
T cell|Proliferating T cell T cell 260
|
| 27 |
+
T cell|Treg T cell 1045
|
| 28 |
+
T cell|gdT T cell 1857
|
| 29 |
+
DC|minor DC 18
|