Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3ddd0b381b1056d2/score.json +71 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/5423c4034a9a6540/status.json +18 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/7c15ab6ada8f1fa1/manifest.json +219 -0
- paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/d2e6d8f5e4eff1c9/support.json +71 -0
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/3ddd0b381b1056d2/score.json
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"arm": "lora",
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"npz": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/ji2025_chili/disease/draw3/lora.npz",
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"reuse": {
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"source_summary": {
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"path": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/recoveries/disease_width_comparison_20261015/ji2025_chili/draw3/score/summary.json",
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}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/5423c4034a9a6540/status.json
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{
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"schema": "pbisc.paper.strict-statistics.v1",
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"support_sha256": "7cc7f8a8c723f40018201189afbe5460063eaa6b81a1ac9198b46e388f4d9e8e",
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"bootstrap_unit": "unique_donor_all_visits_and_draws",
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"bootstrap_replicates": 2000,
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"draws": [
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"draw2_n5"
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],
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| 9 |
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"disease_deg": {
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| 10 |
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"status": "ok",
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| 11 |
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"method": "donor_condition_pseudobulk_limma_duplicateCorrelation_if_repeated_condition",
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| 12 |
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"n_genes_kept": 5927,
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| 13 |
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"rows": 25,
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| 14 |
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"n_pending": 0,
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| 15 |
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"n_not_estimable": 0,
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| 16 |
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"summary_csv": "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw2/statistics/donor_deg/donor_deg_summary.csv"
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| 17 |
+
}
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| 18 |
+
}
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paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/7c15ab6ada8f1fa1/manifest.json
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| 1 |
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{
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| 2 |
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"schema": "paired_ft_extra_metrics.v1",
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"dataset": "imperial_eskd",
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"design": "scored",
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"unit": "strict",
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"written_utc": "2026-10-13T06:03:06.857003+00:00",
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| 7 |
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"command": [
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| 8 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/tools/score_strict.py",
|
| 9 |
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"--support-manifest",
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| 10 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/protocol/splits/imperial_eskd/disease/draw1/support.json",
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| 11 |
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"--out",
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| 12 |
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"/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/scores/imperial_eskd/disease/draw1",
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| 13 |
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"--action",
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| 14 |
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"all",
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| 15 |
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"--threads",
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| 16 |
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"4",
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| 17 |
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"--arm",
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| 18 |
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"lora=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw1/lora.npz",
|
| 19 |
+
"--arm",
|
| 20 |
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"pairedcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw1/pairedcal.npz",
|
| 21 |
+
"--arm",
|
| 22 |
+
"scsemi=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/imperial_eskd/disease/draw1/scsemi.npz",
|
| 23 |
+
"--arm",
|
| 24 |
+
"raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/raw.npz",
|
| 25 |
+
"--arm",
|
| 26 |
+
"refcal=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paper_figures_strictpairs_20261012/generated/global/imperial_eskd/refcal.npz"
|
| 27 |
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|
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|
paper-releases/pbisc-diffusion/updates/20261015T121654Z-x1-nine-core40-deck/diffusion/dataset/server_1/model8/presentations/2026-09-30--paper-summary--r00/data/x1_priority_20261015/builds/20261015T120743086141Z/sources/d2e6d8f5e4eff1c9/support.json
ADDED
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|
| 1 |
+
{
|
| 2 |
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"schema": "pbisc.paper.strict-support.v1",
|
| 3 |
+
"cohort": "immicro",
|
| 4 |
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"design": "healthy_outerfold",
|
| 5 |
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"unit": "fold3_n5",
|
| 6 |
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"n_pairs": 5,
|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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],
|
| 14 |
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"train_donor_ids": [
|
| 15 |
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"HS59",
|
| 16 |
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| 17 |
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| 18 |
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|
| 19 |
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"HS41"
|
| 20 |
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],
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| 21 |
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"test_sample_ids": [
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| 22 |
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| 23 |
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| 35 |
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| 36 |
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| 37 |
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| 38 |
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| 39 |
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| 42 |
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|
| 43 |
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],
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| 44 |
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"test_donor_ids": [
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| 45 |
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|
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"HS106",
|
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|
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],
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"sha256": "da5bd0ca62732497c449a00693622c21fdd07445fbcb1b6ca86bb59b5802636e"
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| 71 |
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}
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