Archive 4 checkpoints (1-4)
Browse files- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot2/SPLIT.json +150 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot2/state_types.tsv +29 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot2_full/SPLIT.json +151 -0
- paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot2_full/state_types.tsv +29 -0
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot2/SPLIT.json
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{
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"dataset": "immicro",
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"kind": "fewshot",
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"idx": 2,
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"reference": [
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| 6 |
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"HS25",
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"HS44",
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"HS48",
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"HS55",
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"HS91"
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],
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"mixture": [
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"HS1",
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"HS2",
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"HS3",
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"HS4",
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"HS6",
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"HS7",
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"HS8",
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"HS9",
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"HS10",
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"HS11",
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"HS12",
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"HS13",
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"HS14",
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"HS15",
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"HS16",
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"HS17",
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"HS18",
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"HS19",
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"HS20",
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"HS21",
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"HS23",
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"HS24",
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"HS26",
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"HS27",
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"HS28",
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"HS29",
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"HS30",
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"HS31",
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"HS32",
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"HS34",
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"HS35",
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"HS36",
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"HS37",
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"HS38",
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| 47 |
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"HS39",
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"HS40",
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"HS41",
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| 50 |
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"HS42",
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"HS43",
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| 52 |
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"HS45",
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| 53 |
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"HS46",
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| 54 |
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"HS47",
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| 55 |
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"HS49",
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| 56 |
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"HS50",
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| 57 |
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"HS51",
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| 58 |
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"HS52",
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| 59 |
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"HS53",
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| 60 |
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"HS54",
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| 61 |
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"HS56",
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| 62 |
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"HS57",
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| 63 |
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"HS58",
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| 64 |
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"HS59",
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| 65 |
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"HS60",
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| 66 |
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"HS61",
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| 67 |
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"HS62",
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| 68 |
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"HS63",
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"HS64",
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| 70 |
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"HS65",
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| 71 |
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"HS66",
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| 72 |
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"HS67",
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| 73 |
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"HS68",
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| 74 |
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"HS69",
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| 75 |
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"HS70",
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| 76 |
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"HS71",
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| 77 |
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"HS72",
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| 78 |
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"HS73",
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| 79 |
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"HS74",
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| 80 |
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"HS75",
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| 81 |
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"HS76",
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| 82 |
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"HS77",
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| 83 |
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"HS78",
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| 84 |
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"HS79",
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| 85 |
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"HS80",
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| 86 |
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"HS81",
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"HS82",
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| 88 |
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"HS83",
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| 89 |
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"HS84",
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| 90 |
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"HS85",
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| 91 |
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"HS86",
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| 92 |
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"HS87",
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| 93 |
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"HS88",
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| 94 |
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"HS89",
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| 95 |
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"HS90",
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| 96 |
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"HS92",
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| 97 |
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"HS93",
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| 98 |
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"HS94",
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| 99 |
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"HS95",
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| 100 |
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"HS96",
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| 101 |
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"HS97",
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"HS98",
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| 103 |
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"HS100",
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| 104 |
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"HS101",
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| 105 |
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"HS102",
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| 106 |
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"HS103",
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| 107 |
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"HS104",
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| 108 |
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"HS105",
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| 109 |
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"HS106",
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| 110 |
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"HS107",
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| 111 |
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"HS108",
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| 112 |
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"HS109",
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| 113 |
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"HS110",
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| 114 |
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"HS111"
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| 115 |
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],
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| 116 |
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"train_donors": [
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| 117 |
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"HS25",
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| 118 |
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"HS44",
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| 119 |
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"HS48",
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| 120 |
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"HS55",
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| 121 |
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"HS91"
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| 122 |
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],
|
| 123 |
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"run_json_check": true,
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| 124 |
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"n_reference_samples": 5,
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| 125 |
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"n_mixture_samples": 102,
|
| 126 |
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"reference_cells": 16646,
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| 127 |
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"states": 28,
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| 128 |
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"states_merged_minor": 3,
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| 129 |
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"types": [
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| 130 |
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"B cell",
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| 131 |
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"DC",
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| 132 |
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"Monocyte",
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| 133 |
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"NK cell",
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| 134 |
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"Other",
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| 135 |
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"T cell"
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| 136 |
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],
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| 137 |
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"missing_types": [],
|
| 138 |
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"bp_axis_genes": 5492,
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| 139 |
+
"genes_kept": 5249,
|
| 140 |
+
"genes_dropped_not_bulk_valid": 0,
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| 141 |
+
"genes_dropped_zero_reference": 243,
|
| 142 |
+
"aggregates_sha256": "7b6b34edb120956685ca3bf8081babec375584c1dfc8c8eb3800fb1154fe598f",
|
| 143 |
+
"files": {
|
| 144 |
+
"reference.tsv.gz": "5434419ca36d9f064a7e7a7d5d8ee4eba503544ac4766bc3909069b8132e982a",
|
| 145 |
+
"state_types.tsv": "8ad677b23f6a62e288c61e593ce2b435055e0a6053af578df878d1c92e601528",
|
| 146 |
+
"mixture.tsv.gz": "e1407c6ab137467a76f0fd627bfafdeba97f988d7fa3901dd03baea8d4727d70"
|
| 147 |
+
},
|
| 148 |
+
"tool_sha256": "70832dddc182ad1955d44d228bd08240649f355c2bc4f41856eea62e24620afc",
|
| 149 |
+
"common_sha256": "23599c7dc2bade09c3e0f6a613a4a63670adab6d1d1e8468ef175c89bd6e2ebf"
|
| 150 |
+
}
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot2/state_types.tsv
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| 1 |
+
state type n_cells
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| 2 |
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B cell|Effector B cell B cell 60
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| 3 |
+
B cell|Memory B cell B cell 683
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| 4 |
+
B cell|Naive B cell B cell 267
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| 5 |
+
B cell|Plasma cell B cell 22
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| 6 |
+
B cell|Transitional B cell B cell 90
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| 7 |
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DC|cDC1 DC 20
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| 8 |
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DC|cDC2 DC 280
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| 9 |
+
DC|pDC DC 51
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| 10 |
+
Monocyte|CD14 monocyte Monocyte 2285
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| 11 |
+
Monocyte|CD16 monocyte Monocyte 420
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| 12 |
+
Monocyte|Intermediate monocyte Monocyte 192
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| 13 |
+
NK cell|CD56bright NK cell NK cell 218
|
| 14 |
+
NK cell|CD56dim NK cell NK cell 915
|
| 15 |
+
NK cell|Proliferating NK cell NK cell 211
|
| 16 |
+
Other|ILC Other 48
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| 17 |
+
Other|Progenitor cell Other 23
|
| 18 |
+
T cell|CD8aa T cell 642
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| 19 |
+
T cell|DN T cell T cell 104
|
| 20 |
+
T cell|MAIT T cell 508
|
| 21 |
+
T cell|Memory CD4 T cell T cell 2704
|
| 22 |
+
T cell|Memory CD8 T cell T cell 1362
|
| 23 |
+
T cell|Naive CD4 T cell T cell 2619
|
| 24 |
+
T cell|Naive CD8 T cell T cell 1458
|
| 25 |
+
T cell|Proliferating T cell T cell 23
|
| 26 |
+
T cell|Treg T cell 588
|
| 27 |
+
T cell|gdT T cell 830
|
| 28 |
+
DC|minor DC 7
|
| 29 |
+
Other|minor Other 16
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot2_full/SPLIT.json
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| 1 |
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{
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| 2 |
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"dataset": "immicro",
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| 3 |
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"kind": "fewshot",
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| 4 |
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"idx": 2,
|
| 5 |
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"reference": [
|
| 6 |
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"HS25",
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| 7 |
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"HS44",
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| 8 |
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"HS48",
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| 9 |
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"HS55",
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| 10 |
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"HS91"
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| 11 |
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],
|
| 12 |
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"mixture": [
|
| 13 |
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"HS1",
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| 14 |
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"HS2",
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| 15 |
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"HS3",
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| 16 |
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"HS4",
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| 17 |
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"HS6",
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| 18 |
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"HS7",
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| 19 |
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"HS8",
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| 20 |
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"HS9",
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| 21 |
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"HS10",
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| 22 |
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"HS11",
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| 23 |
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"HS12",
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| 24 |
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"HS13",
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| 25 |
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"HS14",
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| 26 |
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"HS15",
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| 27 |
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"HS16",
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| 28 |
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"HS17",
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| 29 |
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"HS18",
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| 30 |
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"HS19",
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| 31 |
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"HS20",
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| 32 |
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"HS21",
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| 33 |
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"HS23",
|
| 34 |
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"HS24",
|
| 35 |
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"HS26",
|
| 36 |
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"HS27",
|
| 37 |
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"HS28",
|
| 38 |
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"HS29",
|
| 39 |
+
"HS30",
|
| 40 |
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"HS31",
|
| 41 |
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"HS32",
|
| 42 |
+
"HS34",
|
| 43 |
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"HS35",
|
| 44 |
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"HS36",
|
| 45 |
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"HS37",
|
| 46 |
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"HS38",
|
| 47 |
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"HS39",
|
| 48 |
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"HS40",
|
| 49 |
+
"HS41",
|
| 50 |
+
"HS42",
|
| 51 |
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"HS43",
|
| 52 |
+
"HS45",
|
| 53 |
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"HS46",
|
| 54 |
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"HS47",
|
| 55 |
+
"HS49",
|
| 56 |
+
"HS50",
|
| 57 |
+
"HS51",
|
| 58 |
+
"HS52",
|
| 59 |
+
"HS53",
|
| 60 |
+
"HS54",
|
| 61 |
+
"HS56",
|
| 62 |
+
"HS57",
|
| 63 |
+
"HS58",
|
| 64 |
+
"HS59",
|
| 65 |
+
"HS60",
|
| 66 |
+
"HS61",
|
| 67 |
+
"HS62",
|
| 68 |
+
"HS63",
|
| 69 |
+
"HS64",
|
| 70 |
+
"HS65",
|
| 71 |
+
"HS66",
|
| 72 |
+
"HS67",
|
| 73 |
+
"HS68",
|
| 74 |
+
"HS69",
|
| 75 |
+
"HS70",
|
| 76 |
+
"HS71",
|
| 77 |
+
"HS72",
|
| 78 |
+
"HS73",
|
| 79 |
+
"HS74",
|
| 80 |
+
"HS75",
|
| 81 |
+
"HS76",
|
| 82 |
+
"HS77",
|
| 83 |
+
"HS78",
|
| 84 |
+
"HS79",
|
| 85 |
+
"HS80",
|
| 86 |
+
"HS81",
|
| 87 |
+
"HS82",
|
| 88 |
+
"HS83",
|
| 89 |
+
"HS84",
|
| 90 |
+
"HS85",
|
| 91 |
+
"HS86",
|
| 92 |
+
"HS87",
|
| 93 |
+
"HS88",
|
| 94 |
+
"HS89",
|
| 95 |
+
"HS90",
|
| 96 |
+
"HS92",
|
| 97 |
+
"HS93",
|
| 98 |
+
"HS94",
|
| 99 |
+
"HS95",
|
| 100 |
+
"HS96",
|
| 101 |
+
"HS97",
|
| 102 |
+
"HS98",
|
| 103 |
+
"HS100",
|
| 104 |
+
"HS101",
|
| 105 |
+
"HS102",
|
| 106 |
+
"HS103",
|
| 107 |
+
"HS104",
|
| 108 |
+
"HS105",
|
| 109 |
+
"HS106",
|
| 110 |
+
"HS107",
|
| 111 |
+
"HS108",
|
| 112 |
+
"HS109",
|
| 113 |
+
"HS110",
|
| 114 |
+
"HS111"
|
| 115 |
+
],
|
| 116 |
+
"train_donors": [
|
| 117 |
+
"HS25",
|
| 118 |
+
"HS44",
|
| 119 |
+
"HS48",
|
| 120 |
+
"HS55",
|
| 121 |
+
"HS91"
|
| 122 |
+
],
|
| 123 |
+
"run_json_check": true,
|
| 124 |
+
"n_reference_samples": 5,
|
| 125 |
+
"n_mixture_samples": 102,
|
| 126 |
+
"reference_cells": 16646,
|
| 127 |
+
"states": 28,
|
| 128 |
+
"states_merged_minor": 3,
|
| 129 |
+
"types": [
|
| 130 |
+
"B cell",
|
| 131 |
+
"DC",
|
| 132 |
+
"Monocyte",
|
| 133 |
+
"NK cell",
|
| 134 |
+
"Other",
|
| 135 |
+
"T cell"
|
| 136 |
+
],
|
| 137 |
+
"missing_types": [],
|
| 138 |
+
"bp_axis_genes": 15404,
|
| 139 |
+
"genes_kept": 14274,
|
| 140 |
+
"genes_dropped_not_bulk_valid": 17,
|
| 141 |
+
"genes_dropped_zero_reference": 1113,
|
| 142 |
+
"gene_mode": "full",
|
| 143 |
+
"aggregates_sha256": "4215e1c95c8ff835ea4867157ac47c5ae1b7cc8c51c4f4b5457e4c2e537b9aca",
|
| 144 |
+
"files": {
|
| 145 |
+
"reference.tsv.gz": "89b22e0ffc80f1492b2f8e6d0e797cc753732292f1916b8f886ef9d229088bd1",
|
| 146 |
+
"state_types.tsv": "8ad677b23f6a62e288c61e593ce2b435055e0a6053af578df878d1c92e601528",
|
| 147 |
+
"mixture.tsv.gz": "8a722043ad06196878f846bdd896cdb6d5aa9bbe94ac0a45f125031aab683346"
|
| 148 |
+
},
|
| 149 |
+
"tool_sha256": "bb7df6866fa6c477bb1ddcf0e520d615346852be91adcb4d0bfdc2fac51e8bf0",
|
| 150 |
+
"common_sha256": "6f6e873744fff7d06ff3495b058bdceaa572fce7a932eb0fc6addb74f0711875"
|
| 151 |
+
}
|
paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/bayesprism_paired_20261006/inputs/immicro/fewshot2_full/state_types.tsv
ADDED
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|
| 1 |
+
state type n_cells
|
| 2 |
+
B cell|Effector B cell B cell 60
|
| 3 |
+
B cell|Memory B cell B cell 683
|
| 4 |
+
B cell|Naive B cell B cell 267
|
| 5 |
+
B cell|Plasma cell B cell 22
|
| 6 |
+
B cell|Transitional B cell B cell 90
|
| 7 |
+
DC|cDC1 DC 20
|
| 8 |
+
DC|cDC2 DC 280
|
| 9 |
+
DC|pDC DC 51
|
| 10 |
+
Monocyte|CD14 monocyte Monocyte 2285
|
| 11 |
+
Monocyte|CD16 monocyte Monocyte 420
|
| 12 |
+
Monocyte|Intermediate monocyte Monocyte 192
|
| 13 |
+
NK cell|CD56bright NK cell NK cell 218
|
| 14 |
+
NK cell|CD56dim NK cell NK cell 915
|
| 15 |
+
NK cell|Proliferating NK cell NK cell 211
|
| 16 |
+
Other|ILC Other 48
|
| 17 |
+
Other|Progenitor cell Other 23
|
| 18 |
+
T cell|CD8aa T cell 642
|
| 19 |
+
T cell|DN T cell T cell 104
|
| 20 |
+
T cell|MAIT T cell 508
|
| 21 |
+
T cell|Memory CD4 T cell T cell 2704
|
| 22 |
+
T cell|Memory CD8 T cell T cell 1362
|
| 23 |
+
T cell|Naive CD4 T cell T cell 2619
|
| 24 |
+
T cell|Naive CD8 T cell T cell 1458
|
| 25 |
+
T cell|Proliferating T cell T cell 23
|
| 26 |
+
T cell|Treg T cell 588
|
| 27 |
+
T cell|gdT T cell 830
|
| 28 |
+
DC|minor DC 7
|
| 29 |
+
Other|minor Other 16
|