Datasets:

junidude14
/

PBISC-data

paper-releases/pbisc-diffusion/updates/20261005T133325Z-deck-scratch-samepairs-tracking/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores_contrast/ji2025_chili/scsemi_cv_20261002/pooled/contrast.csv ADDED Viewed

	@@ -0,0 +1,11 @@

+dataset,design,unit,arm,celltype,statistic,label,n_genes,pearson_r_generated,spearman_r_generated,pearson_r_broadcast,spearman_r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,condition,condition_sha256,pearson_r_generated_scorer,pearson_r_broadcast_scorer,partial_r_generated_given_broadcast_scorer,r_generated_vs_broadcast_scorer
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,T cell,mean_cp10k,"scSemiProfiler, all training pairs (5-fold CV)",3021.0,0.29436354030391015,0.09289172689587141,0.22039608693345034,0.09749861429165937,0.2517623899268927,0.25957519106387295,conditions_pooled_raw.npz@a13338f5,a13338f530600178689cf085a337667882704cc2bbe48b04ac9a60c9a1fac007,0.2943635403039101,0.2203960869334503,0.2517623899268927,0.2595751910638729
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,T cell,pseudobulk_log1p_cpm,"scSemiProfiler, all training pairs (5-fold CV)",3021.0,0.12479500212121623,0.043071183652918454,0.27145331834905573,0.22332017952502015,0.08041973007500341,0.1792130960900295,conditions_pooled_raw.npz@a13338f5,a13338f530600178689cf085a337667882704cc2bbe48b04ac9a60c9a1fac007,0.1247950021212162,0.2714533183490557,0.0804197300750034,0.1792130960900295
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,B cell,mean_cp10k,"scSemiProfiler, all training pairs (5-fold CV)",3245.0,0.15087339535743186,0.029072086345598092,0.13326750229861392,0.03318867346587475,0.12795720051741694,0.19968584972099426,conditions_pooled_raw.npz@a13338f5,a13338f530600178689cf085a337667882704cc2bbe48b04ac9a60c9a1fac007,0.1508733953574318,0.1332675022986139,0.1279572005174169,0.1996858497209942
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,B cell,pseudobulk_log1p_cpm,"scSemiProfiler, all training pairs (5-fold CV)",3245.0,0.09316132319083319,0.042954239670272135,0.01993963216355321,0.014957835373367154,0.09165018968276631,0.09950736992764438,conditions_pooled_raw.npz@a13338f5,a13338f530600178689cf085a337667882704cc2bbe48b04ac9a60c9a1fac007,0.0931613231908331,0.0199396321635532,0.0916501896827663,0.0995073699276443
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,Monocyte,mean_cp10k,"scSemiProfiler, all training pairs (5-fold CV)",3154.0,0.48043734969339996,0.31280213637099785,0.3983317004681723,0.23043456016556318,0.4178994565467743,0.2832269421984822,conditions_pooled_raw.npz@a13338f5,a13338f530600178689cf085a337667882704cc2bbe48b04ac9a60c9a1fac007,0.4804373496933999,0.3983317004681723,0.4178994565467743,0.2832269421984822
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,Monocyte,pseudobulk_log1p_cpm,"scSemiProfiler, all training pairs (5-fold CV)",3154.0,0.3342815634597003,0.2597259224248025,0.35676796217145185,0.23555570709826826,0.29494060477042755,0.1768456687151709,conditions_pooled_raw.npz@a13338f5,a13338f530600178689cf085a337667882704cc2bbe48b04ac9a60c9a1fac007,0.3342815634597003,0.3567679621714518,0.2949406047704275,0.1768456687151709
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,NK cell,mean_cp10k,"scSemiProfiler, all training pairs (5-fold CV)",3051.0,0.1666806321851843,0.07134034146782263,0.20750320008350984,0.08103662629740357,0.1174703091782992,0.27005207728361336,conditions_pooled_raw.npz@a13338f5,a13338f530600178689cf085a337667882704cc2bbe48b04ac9a60c9a1fac007,0.1666806321851843,0.2075032000835098,0.1174703091782992,0.2700520772836133
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,NK cell,pseudobulk_log1p_cpm,"scSemiProfiler, all training pairs (5-fold CV)",3051.0,0.16709321309848635,0.1362927059896924,0.10364196133517908,0.07837401366094673,0.15268750452838273,0.1676733728474005,conditions_pooled_raw.npz@a13338f5,a13338f530600178689cf085a337667882704cc2bbe48b04ac9a60c9a1fac007,0.1670932130984863,0.103641961335179,0.1526875045283827,0.1676733728474005
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,mean4,mean_cp10k,"scSemiProfiler, all training pairs (5-fold CV)",,0.2730887293849816,0.12652657277007248,0.2398746224459366,0.11053961855512523,0.22877233904234578,0.2531350150667407,,,0.2730887293849815,0.23987462244593655,0.22877233904234578,0.25313501506674063
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,mean4,pseudobulk_log1p_cpm,"scSemiProfiler, all training pairs (5-fold CV)",,0.17983277546755902,0.12051101293442137,0.18795071850481,0.13805193391440057,0.154924507264145,0.15580987689506132,,,0.179832775467559,0.1879507185048099,0.15492450726414497,0.1558098768950613

	@@ -0,0 +1,16 @@

+dataset,design,unit,arm,celltype,method,deg_scored,pred_defined,overlap,overlap_scorer,obs_list_size,gen_list_size,n_sig_obs,n_sig_gen,n_tested_obs,n_tested_gen,G_both,chance_overlap,broadcast_overlap,broadcast_overlap_scorer,broadcast_list_size,n_sig_broadcast,n_tested_broadcast,G_both_broadcast,broadcast_chance_overlap,condition
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,T cell,welch,True,True,0,0.0,50,0,1897,0,5696,2360,2359,0.0,0,0.0,15,15,5541,5498,0.1364132411786104,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,B cell,welch,True,True,0,0.0,50,0,73,0,5418,1011,1011,0.0,1,1.0,15,15,5541,5265,0.14245014245014245,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,Monocyte,welch,True,True,0,0.0,50,0,346,0,5699,1260,1260,0.0,2,2.0,15,15,5541,5502,0.13631406761177753,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,NK cell,welch,True,True,0,0.0,50,0,396,0,5516,1734,1734,0.0,1,1.0,15,15,5541,5354,0.14008218154650728,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,DC,welch,True,True,0,0.0,50,0,138,0,5168,718,718,0.0,0,0.0,15,15,5541,5071,0.14789982252021297,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,T cell,limma_voom_nonzero,True,True,0,,50,50,334,871,5696,2360,2359,1.05977108944468,4,,50,53,5541,5498,0.45471080392870133,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,B cell,limma_voom_nonzero,True,True,0,,50,0,199,0,5418,1011,1011,0.0,3,,50,53,5541,5265,0.4748338081671415,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,Monocyte,limma_voom_nonzero,True,True,0,,50,28,479,28,5699,1260,1260,1.1111111111111112,2,,50,53,5541,5502,0.45438022537259176,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,NK cell,limma_voom_nonzero,True,True,0,,50,1,223,1,5516,1734,1734,0.02883506343713956,2,,50,53,5541,5354,0.4669406051550243,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,DC,limma_voom_nonzero,True,True,0,,50,0,1813,0,5168,718,718,0.0,4,,50,53,5541,5071,0.49299940840070994,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,T cell,limma_voom_filterByExpr,True,True,0,,50,0,416,0,3449,281,281,0.0,3,,50,55,3794,3013,0.829737802854298,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,B cell,limma_voom_filterByExpr,True,True,0,,50,0,191,0,1549,146,146,0.0,4,,50,55,3794,1467,1.7041581458759374,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,Monocyte,limma_voom_filterByExpr,True,True,0,,50,14,488,14,2984,259,259,2.7027027027027026,2,,50,55,3794,2752,0.9084302325581395,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,NK cell,limma_voom_filterByExpr,True,True,0,,50,0,207,0,2630,236,236,0.0,3,,50,55,3794,2448,1.0212418300653594,conditions_pooled_raw.npz@a13338f5
+ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,DC,limma_voom_filterByExpr,True,True,0,,50,1,174,1,925,175,174,0.28735632183908044,8,,50,55,3794,883,2.8312570781426953,conditions_pooled_raw.npz@a13338f5

	@@ -0,0 +1,2 @@


1	+ dataset,design,unit,arm,label,role,condition,pearson_r,spearman_r,partial_r,broadcast_pearson_r,broadcast_spearman_r,splithalf_r_AB,splithalf_r_AB_sd,splithalf_spearman_AB,sb_reliability,noise_free_ceiling,r_generated_vs_halfB,r_broadcast_vs_halfB,welch_top50,welch_top50_max,welch_top50_chance,welch_top50_broadcast,welch_top50_broadcast_chance,welch_n_sig_obs,welch_n_sig_gen,welch_n_sig_broadcast_per_type,welch_types_scored,limma_top50,limma_top50_max,limma_top50_chance,limma_top50_broadcast,limma_top50_broadcast_chance,limma_n_sig_obs,limma_n_sig_gen,limma_n_sig_broadcast_per_type,limma_types_scored,limma_fbe_top50,limma_fbe_top50_max,limma_fbe_top50_chance,limma_fbe_top50_broadcast,limma_fbe_top50_broadcast_chance,limma_fbe_n_sig_obs,limma_fbe_n_sig_gen,limma_fbe_n_sig_broadcast_per_type,limma_fbe_types_scored,cat50,cat50_chance,cat100,cat100_chance,rbo,rbo_up_down,cat_types,broadcast_cat50,broadcast_cat50_chance,broadcast_cat100,broadcast_cat100_chance,broadcast_rbo,broadcast_rbo_up_down,broadcast_cat_types,repro_pass
2	+ ji2025_chili,scored,scsemi_cv_20261002/pooled,scsemi__raw,"scSemiProfiler, all training pairs (5-fold CV)",scsemi,conditions_pooled_raw.npz@a13338f5,0.2730887293849816,0.12652657277007248,0.22877233904234578,0.2398746224459366,0.11053961855512523,0.8933460729084324,0.003023938509812342,0.7836746479091096,0.9418625156081898,0.9702277814744693,0.26797044874936743,0.23420492618112912,0,250,0.0,4,0.7031594553072507,2850,0,15,5,0,250,2.1997172639929308,15,2.343864851024169,3048,900,53,5,0,250,2.9900590245417833,20,7.294825089496429,1476,15,55,5,0.028000000000000004,0.020880689209101445,0.062,0.04176137841820289,0.03469104254762278,0.04774462983171538,5,0.044,0.004687729702048338,0.068,0.009375459404096675,0.06530702120731043,0.04590326003768017,5,True

	@@ -0,0 +1,3 @@


1	+ limma jobs: 22 (22 ok)
2	+
3	+ --- stderr ---