Archive 4 checkpoints (1-4)

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/giroux2022/scsemi_cv_20261002/fold1/contrast.csv

@@ -0,0 +1,14 @@
+arm,celltype,statistic,n_genes,r_generated,r_broadcast,partial_r_generated_given_broadcast,r_generated_vs_broadcast,n_case_donors_obs,n_control_donors_obs,n_case_donors_gen,n_control_donors_gen,n_cells_obs,n_cells_gen,deg_scored,top50_overlap,top50_jaccard,obs_top_list_size,gen_top_list_size,n_sig_obs,n_sig_gen,top50_overlap_broadcast,top50_jaccard_broadcast,broadcast_top_list_size,n_sig_broadcast
+scsemi__raw,T cell,mean_cp10k,2985,0.2667264058651374,0.528509024489436,0.11566127428187073,0.32925292262737976,3,2,3,2,31931,3877,,,,,,,,,,,
+scsemi__raw,T cell,pseudobulk_log1p_cpm,2985,0.18914889889902736,0.6227164841016278,0.03749250618756679,0.2582363004355871,3,2,3,2,31931,3877,,,,,,,,,,,
+scsemi__raw,B cell,mean_cp10k,3129,0.21767572884923297,0.35854189316410323,0.15070883348451244,0.22476227679962898,3,2,3,2,4286,416,,,,,,,,,,,
+scsemi__raw,B cell,pseudobulk_log1p_cpm,3129,0.05617735312669878,0.47877242045896884,-0.010212826063768214,0.13589007549900847,3,2,3,2,4286,416,,,,,,,,,,,
+scsemi__raw,Monocyte,mean_cp10k,3041,0.4379521400527092,0.5462520370780479,0.2653501096938211,0.43545651283908604,3,2,3,2,10458,2136,,,,,,,,,,,
+scsemi__raw,Monocyte,pseudobulk_log1p_cpm,3041,0.262273579415812,0.5795633967312784,0.13354408045604896,0.27183014034341585,3,2,3,2,10458,2136,,,,,,,,,,,
+scsemi__raw,NK cell,mean_cp10k,3022,0.33253867548819216,0.43765537257068865,0.2117779631969251,0.35268898924376524,3,2,3,2,4819,761,,,,,,,,,,,
+scsemi__raw,NK cell,pseudobulk_log1p_cpm,3022,0.16601111170722113,0.5518324169430986,0.03649079050207227,0.24740387835019306,3,2,3,2,4819,761,,,,,,,,,,,
+scsemi__raw,T cell,welch_top50_deg,5563,,,,,3,2,3,2,31931,3877,True,0,,0,0,0,0,0,,0,0
+scsemi__raw,B cell,welch_top50_deg,5563,,,,,3,2,3,2,4286,416,True,0,,0,0,0,0,0,,0,0
+scsemi__raw,Monocyte,welch_top50_deg,5563,,,,,3,2,3,2,10458,2136,True,0,,0,0,0,0,0,,0,0
+scsemi__raw,NK cell,welch_top50_deg,5563,,,,,3,2,3,2,4819,761,True,0,,0,0,0,0,0,,0,0
+scsemi__raw,DC,welch_top50_deg,5563,,,,,3,2,3,2,662,32,True,0,,0,0,0,0,0,,0,0

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/giroux2022/scsemi_cv_20261002/fold1/per_donor.csv

@@ -0,0 +1,6 @@
+arm,donor,group,n_generated_cells,n_observed_cells,n_reference_cells,gen_T cell,obs_T cell,gen_B cell,obs_B cell,gen_Monocyte,obs_Monocyte,gen_NK cell,obs_NK cell,gen_DC,obs_DC,gen_Other,obs_Other,comp_l1,comp_l1_obs_loo_null,pb_r,pb_own_rank,pb_top1,precision,coverage,precision_depth_matched,coverage_depth_matched,mono_pct_gen,mono_pct_obs,median_umi_gen,median_umi_obs
+scsemi__raw,0B943B_d0,mild,1500,11344,150,0.498,0.6220028208744711,0.027333333333333334,0.08312764456981664,0.27466666666666667,0.12588152327221439,0.17933333333333334,0.11865303244005641,0.009333333333333334,0.023977433004231313,0.011333333333333334,0.026357545839210156,0.41893088857545846,0.34000141284571284,0.5930900079662251,5,False,1.0,0.7933333333333333,0.74,0.15333333333333332,27.46666666666667,12.588152327221438,456.0,539.0
+scsemi__raw,0B943B_d14,mild,1500,15650,150,0.5166666666666667,0.5652396166134185,0.12666666666666668,0.11175718849840256,0.188,0.17086261980830672,0.10666666666666667,0.09789137380191694,0.002,0.009968051118210863,0.06,0.04428115015974441,0.11308200212992534,0.21419201113245961,0.6581692262493687,2,False,1.0,0.88,0.6,0.42,18.8,17.08626198083067,458.0,461.0
+scsemi__raw,0BF51C_d0,severe,1500,6510,150,0.2846666666666667,0.4012288786482335,0.03266666666666666,0.01674347158218126,0.5086666666666667,0.4609831029185868,0.13933333333333334,0.07726574500768049,0.0013333333333333333,0.006144393241167435,0.03333333333333333,0.03763440860215054,0.25134869431643625,0.629852183961999,0.6574799900593404,1,True,1.0,0.64,0.4866666666666667,0.43333333333333335,50.866666666666674,46.09831029185868,457.0,628.0
+scsemi__raw,0BF51C_d7,severe,1500,10105,150,0.6113333333333333,0.612370113805047,0.050666666666666665,0.05700148441365661,0.248,0.1607125185551707,0.038,0.05294408708560119,0.004,0.0073231073725878275,0.048,0.10964868876793667,0.17457496288965862,0.2108373656889435,0.5683029857384005,3,False,1.0,0.8266666666666667,0.68,0.24666666666666667,24.8,16.071251855517072,456.0,509.0
+scsemi__raw,0BF51C_d14,severe,1500,11419,150,0.674,0.6330676941938874,0.04,0.07960416849111131,0.20466666666666666,0.151589456169542,0.044,0.07907872843506436,0.004666666666666667,0.010508801120938787,0.03266666666666666,0.04615115158945617,0.1880190326064746,0.10699132733840586,0.6209535406481763,1,True,1.0,0.78,0.54,0.32,20.466666666666665,15.1589456169542,456.0,541.0

paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/giroux2022/scsemi_cv_20261002/fold1/summary.json

@@ -0,0 +1,453 @@
+{
+ "schema": "paired_ft_scores.v1",
+ "dataset": "giroux2022",
+ "written_utc": "2026-10-08T01:55:57.008679+00:00",
+ "command": [
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/tools/score_ft.py",
+  "--dataset",
+  "giroux2022",
+  "--out",
+  "/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/scores/giroux2022/scsemi_cv_20261002/fold1",
+  "--threads",
+  "8",
+  "--arm",
+  "scsemi__raw=/home/sj_server_1/PBISC/immun-pbmc-fm/model_8_sparse_data_diffusion/plans/paired_finetune_intradataset_20260927/generated/giroux2022/fold1/scsemi__raw.npz",
+  "--case-groups",
+  "severe",
+  "--control-groups",
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+ ],
+ "arms": [
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+ ],
+ "donors": [
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+  "0BF51C_d7",
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+ ],
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+   "top_deg_genes",
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paper-releases/pbisc-diffusion/updates/20261008T022410Z-deconv-scsemi-deck/diffusion/dataset/server_1/model8/plans/paired_finetune_intradataset_20260927/scores/giroux2022/scsemi_cv_20261002/fold2/arms/scsemi__raw/deg_top50_lists.csv

@@ -0,0 +1,60 @@
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