Add coronary module (ported from Generation-I dna-seq/just_coronary)

data/coronary/annotations.parquet

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data/coronary/clin_sig_authority_calls.parquet

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data/coronary/clin_sig_concordance.parquet

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data/coronary/manifest.json

@@ -2,10 +2,11 @@
   "manifest_version": "1.0",
   "schema_version": "1.0",
   "identity": {
-    "namespace": null,
+    "namespace": "just-dna-seq",
     "name": "coronary",
-    "version": null,
-    "canonical_id": null
+    "version": "1.1.0",
+    "version_coerced_from": null,
+    "canonical_id": "just-dna-seq/coronary@1.1.0"
   },
   "display": {
     "title": "Coronary",
@@ -19,11 +20,13 @@
   "curator": "just-dna-seq",
   "method": "expert-curated",
   "license": null,
-  "owner": null,
+  "authority_precedence": [],
+  "weighting": null,
+  "owner": "just-dna-seq",
   "authors": [],
   "authorship": [],
   "created_at": null,
-  "published_at": null,
+  "published_at": "2026-09-26T23:43:59Z",
   "stats": {
     "variant_count": 27,
     "weights_rows": 81,
@@ -60,24 +63,42 @@
   },
   "compilation": {
     "compile_success": true,
-    "compiled_by": null,
-    "compiler_version": "just-dna-compiler 0.5.1",
-    "ensembl_reference": null,
-    "compiled_at": "2026-08-09T17:52:25Z",
+    "compiled_by": "marketplace-server",
+    "compiler_version": "just-dna-compiler 0.7.0",
+    "ensembl_reference": "just-dna-seq/ensembl_variations",
+    "compiled_at": "2026-09-26T23:43:59Z",
     "warnings": [
-      "sources.csv has no row for 1 source(s) the module's fact tables cite: ['pubmed'] — their terms are unrecorded."
+      "This module records no closure: nothing in it states that authoring is finished, so a consumer cannot tell a spec still being edited from one its author considers done. Run `just-dna-compiler close <spec-dir>` when the module is complete — closing is a deliberate act, it is never stamped by a passing check, and editing any authored file afterwards drops the closure again. Compiling without one is a warning today; requiring it is filed for 1.0 (RM73).",
+      "verification.json records 1 finding(s) across 1 check(s): citation_existence (1 of 59). A finding is a disagreement between this module and a source, not a defect — the archive is the stale side often enough that this never fails a build. Read the record's `detail` for which rows, and record why the module is right in `provenance.json`'s `outranks` where it is."
     ],
-    "resolution_mode": "best_effort",
+    "carried": [
+      "verification.json records 1 finding(s) across 1 check(s): citation_existence (1 of 59). A finding is a disagreement between this module and a source, not a defect — the archive is the stale side often enough that this never fails a build. Read the record's `detail` for which rows, and record why the module is right in `provenance.json`'s `outranks` where it is."
+    ],
+    "warnings_summary": {
+      "module_not_closed": 1,
+      "verification_findings_recorded": 1
+    },
+    "dropped_rows": {},
+    "resolution_mode": "strict",
     "fully_resolved": true,
+    "resolution_subjects": 81,
+    "expanded_keys": 0,
+    "expanded_rows": 0,
     "resolution_signature": "sha256:31da77f2a29f69b8e52cf1fbfcc49a4caa6a788b0862eb35e01ce65c0ec22585",
     "resolution_sources": [
       "cache"
     ],
     "vrs_alleles": 48,
-    "vrs_alleles_identified": 48
+    "vrs_alleles_identified": 48,
+    "positional_rows": 0,
+    "positional_rows_placed": 0
   },
   "frequency": null,
   "gene_metrics": null,
+  "gene_validity": null,
+  "clinical_assertions": null,
+  "gwas_effects": null,
+  "expression_effects": null,
   "literature": {
     "signature": "sha256:ec509335cc075d34b9a36abcdead37a9aa0e428838b9aa2574ebc7302580c02a",
     "sources": [
@@ -89,8 +110,10 @@
     "open_access_count": 19,
     "abstract_only_count": 0,
     "quotes_authored": 0,
-    "quotes_found": 0
+    "quotes_found": 0,
+    "quotes_unchecked": 59
   },
+  "clin_sig_concordance": null,
   "sources": {
     "signature": "sha256:b1c5043ccc97b5c15683fcdc1c63de32c6da8e270295619f2c4954817ed8332f",
     "sources": [
@@ -117,59 +140,231 @@
     "redistribution": true,
     "row_count": 1
   },
+  "verification": {
+    "signature": "sha256:eb760695e3d7e742ac77b74da19254d60e5962b125da1412557984e46281e553",
+    "module_hash": "sha256:8d43198d97dcd1250cf9f10d6cb28892be17c588062ff6dd37de9b229ef370ac",
+    "producer": "just-dna-enricher 0.7.0",
+    "produced_at": "2026-09-26T23:43:58Z",
+    "closure": null,
+    "checks": [
+      {
+        "check": "citation_existence",
+        "subjects": 59,
+        "findings": 1,
+        "skipped": null,
+        "detail": "1 cited DOI(s) do not resolve in Crossref",
+        "source": "pubmed",
+        "release": null,
+        "checked_at": "2026-09-26T17:34:21Z",
+        "producer": "just-dna-enricher 0.7.2"
+      },
+      {
+        "check": "citation_identifier",
+        "subjects": 0,
+        "findings": 0,
+        "skipped": "nothing_to_check",
+        "detail": "none of 59 citation(s) carries an authored DOI or PMC id, so there was nothing to compare against PubMed's own",
+        "source": "pubmed",
+        "release": null,
+        "checked_at": "2026-09-26T17:34:21Z",
+        "producer": "just-dna-enricher 0.7.2"
+      },
+      {
+        "check": "clinical_significance",
+        "subjects": 0,
+        "findings": 0,
+        "skipped": null,
+        "detail": null,
+        "source": "clinvar",
+        "release": "clinvar_2026-06-27",
+        "checked_at": "2026-09-26T23:43:58Z",
+        "producer": "just-dna-enricher 0.7.0"
+      },
+      {
+        "check": "dataset_currency",
+        "subjects": 0,
+        "findings": 0,
+        "skipped": "nothing_to_check",
+        "detail": "the module records no release, so it makes no claim about where its rows came from",
+        "source": null,
+        "release": null,
+        "checked_at": "2026-09-26T23:43:58Z",
+        "producer": "just-dna-enricher 0.7.0"
+      },
+      {
+        "check": "evidence_status_currency",
+        "subjects": 0,
+        "findings": 0,
+        "skipped": "nothing_to_check",
+        "detail": "this module records no citation drafted from CIViC's API, so there is no recorded curation status to re-ask about",
+        "source": "civic",
+        "release": null,
+        "checked_at": "2026-09-26T23:43:58Z",
+        "producer": "just-dna-enricher 0.7.0"
+      },
+      {
+        "check": "genome_build_agreement",
+        "subjects": 0,
+        "findings": 0,
+        "skipped": "offline",
+        "detail": "the GRCh37 service is the only thing that can tell an old-assembly coordinate from a wrong ref, and there is no local GRCh37 data",
+        "source": "ensembl-grch37",
+        "release": null,
+        "checked_at": "2026-09-26T23:43:58Z",
+        "producer": "just-dna-enricher 0.7.0"
+      },
+      {
+        "check": "provenance_quote",
+        "subjects": 0,
+        "findings": 0,
+        "skipped": "nothing_to_check",
+        "detail": "no provenance quote or regex on any citation, so none of them asked this question",
+        "source": "europepmc",
+        "release": null,
+        "checked_at": "2026-09-26T17:34:21Z",
+        "producer": "just-dna-enricher 0.7.2"
+      },
+      {
+        "check": "published_refutation",
+        "subjects": 0,
+        "findings": 0,
+        "skipped": null,
+        "detail": "no authored direction sits beside a published refutation (basis accepted)",
+        "source": "civic",
+        "release": "civic_01-Sep-2026",
+        "checked_at": "2026-09-26T23:43:58Z",
+        "producer": "just-dna-enricher 0.7.0"
+      },
+      {
+        "check": "reference_allele",
+        "subjects": 27,
+        "findings": 0,
+        "skipped": null,
+        "detail": null,
+        "source": "seqrepo",
+        "release": null,
+        "checked_at": "2026-09-26T17:34:08Z",
+        "producer": "just-dna-enricher 0.7.2"
+      },
+      {
+        "check": "rsid_coordinate_agreement",
+        "subjects": 0,
+        "findings": 0,
+        "skipped": "nothing_to_check",
+        "detail": "no row authors both an rsID and a coordinate, so the module makes no pair claim to compare — this is not a comparison that found nothing",
+        "source": "ensembl",
+        "release": null,
+        "checked_at": "2026-09-26T23:43:58Z",
+        "producer": "just-dna-enricher 0.7.0"
+      },
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+        "findings": 0,
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+        "detail": null,
+        "source": "dbsnp",
+        "release": null,
+        "checked_at": "2026-09-26T17:34:08Z",
+        "producer": "just-dna-enricher 0.7.2"
+      }
+    ]
+  },
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       "name": "module_spec.yaml",
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       "name": "variants.csv",
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@@ -179,5 +374,6 @@
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   "signature": null
 }

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