Archive CFD workflow 2026-10-12: _root_files

cfd_workflow_20261012/README.md

@@ -0,0 +1 @@
+bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1002_3

cfd_workflow_20261012/cal_ave_drag.py

@@ -0,0 +1,13 @@
+import numpy as np
+import os
+
+# path = "gen_meshes_1012_sep_batch_144_base_sim2/test_meshes_dgs0_sts0.75_nis100_nol0_nos30_lr0.0005_F_S_WWC_WM_541"
+path = "test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_15/test_meshes_dgs3.9847495044325627_sts1_nis100_nol0_nos32_lr0.0060719894934413024_E_S_WWC_WM_265_generated_denorm"
+data = np.loadtxt(os.path.join(path, "postProcessing/car/0/forceCoeffs.dat"), comments="#")
+mask = data[:,0] >= 2000 # 1500
+avg_drag = np.mean(data[mask, 2])  # 根据列号修改
+
+with open(os.path.join(path, "avg_drag.txt"), "w") as f:
+    f.write(f"{avg_drag}\n")
+    
+print("Average Drag Coeff:", avg_drag)

cfd_workflow_20261012/cal_ave_drag_batch.py

@@ -0,0 +1,93 @@
+import numpy as np
+import os
+import glob
+
+# 可以修改这个路径来处理不同的基础文件夹
+# base_path = "test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all*"
+base_path = "test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all*"
+base_path = "test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_rebuttal_R1_*"
+base_path = "test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_rebuttal_R*"
+base_path = "triopt_output_*"
+
+
+
+
+print(f"正在搜索 {base_path} 下包含2500文件夹的子目录...")
+
+# 搜索所有包含2500文件夹的路径
+pattern = os.path.join(base_path, "**/2500")
+
+paths_with_2500 = glob.glob(pattern, recursive=True)
+
+if not paths_with_2500:
+    print("未找到包含2500文件夹的子目录！")
+    exit()
+
+# 获取包含2500文件夹的父目录
+subdirs = []
+for path_2500 in paths_with_2500:
+    parent_dir = os.path.dirname(path_2500)
+    subdirs.append(parent_dir)
+
+subdirs = sorted(set(subdirs))  # 去重并排序
+
+print(f"找到 {len(subdirs)} 个包含2500文件夹的子目录:")
+for subdir in subdirs:
+    print(f"  - {os.path.relpath(subdir, base_path)}")
+
+print("\n开始批量计算...")
+
+results = []
+
+for i, subdir in enumerate(subdirs, 1):
+    subdir_name = os.path.relpath(subdir, base_path)
+    print(f"[{i}/{len(subdirs)}] 处理: {subdir_name}")
+    
+    try:
+        # 原始代码逻辑，但路径改为动态的subdir
+        path = subdir
+        data = np.loadtxt(os.path.join(path, "postProcessing/car/0/forceCoeffs.dat"), comments="#")
+        mask = data[:,0] >= 2000 # 1500
+        avg_drag = np.mean(data[mask, 2])  # 根据列号修改
+
+        with open(os.path.join(path, "avg_drag.txt"), "w") as f:
+            f.write(f"{avg_drag}\n")
+            
+        print(f"  ✓ Average Drag Coeff: {avg_drag:.6f}")
+        results.append((subdir_name, avg_drag))
+        
+    except Exception as e:
+        print(f"  ✗ 处理失败: {e}")
+
+# 打印所有结果
+print(f"\n{'='*60}")
+print(f"批量计算完成！处理了 {len(results)} 个子目录")
+print(f"{'='*60}")
+
+if results:
+    print("所有结果:")
+    for subdir_name, avg_drag in results:
+        print(f"  {subdir_name}: {avg_drag:.6f}")
+    
+    # 计算统计信息
+    all_drags = [avg_drag for _, avg_drag in results]
+    print(f"\n统计信息:")
+    print(f"  平均值: {np.mean(all_drags):.6f}")
+    print(f"  标准差: {np.std(all_drags):.6f}")
+    print(f"  最小值: {np.min(all_drags):.6f}")
+    print(f"  最大值: {np.max(all_drags):.6f}")
+    
+    # 保存汇总结果
+    summary_path = os.path.join(base_path, "batch_drag_results.txt")
+    with open(summary_path, "w") as f:
+        f.write("批量阻力系数计算结果\n")
+        f.write("="*40 + "\n")
+        for subdir_name, avg_drag in results:
+            f.write(f"{subdir_name}: {avg_drag:.6f}\n")
+        f.write(f"\n统计信息:\n")
+        f.write(f"平均值: {np.mean(all_drags):.6f}\n")
+        f.write(f"标准差: {np.std(all_drags):.6f}\n")
+        f.write(f"最小值: {np.min(all_drags):.6f}\n")
+        f.write(f"最大值: {np.max(all_drags):.6f}\n")
+    
+    print(f"\n汇总结果已保存到: {summary_path}")

cfd_workflow_20261012/drag_results_organized.csv

@@ -0,0 +1,21 @@
+Shape_ID,Name_1_generated,AvgDrag_1_generated,Name_1_original,AvgDrag_1_original,Name_2_generated,AvgDrag_2_generated,Name_2_original,AvgDrag_2_original,Name_3_generated,AvgDrag_3_generated,Name_3_original,AvgDrag_3_original
+E_S_WWC_WM_005,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol0_nos32_lr0.0060719894934413024_E_S_WWC_WM_005_generated_denorm,0.3944345861,,,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_E_S_WWC_WM_005_generated_denorm,0.3112970543,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_E_S_WWC_WM_005_original_denorm,0.3680911892,test_meshes_dgs3.9847495044325627_sts1_nis100_nol0_nos32_lr0.0060719894934413024_E_S_WWC_WM_005_generated_denorm,0.3726995816,,
+E_S_WWC_WM_121,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol0_nos32_lr0.0060719894934413024_E_S_WWC_WM_121_generated_denorm,0.3501637639,,,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_E_S_WWC_WM_121_generated_denorm,0.2921688151,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_E_S_WWC_WM_121_original_denorm,0.3461788710,test_meshes_dgs3.9847495044325627_sts1_nis100_nol0_nos32_lr0.0060719894934413024_E_S_WWC_WM_121_generated_denorm,0.3486945843,,
+E_S_WWC_WM_265,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol0_nos32_lr0.0060719894934413024_E_S_WWC_WM_265_generated_denorm,0.3748098060,,,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_E_S_WWC_WM_265_generated_denorm,0.2685194392,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_E_S_WWC_WM_265_original_denorm,0.3550341020,,,,
+E_S_WWC_WM_397,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol0_nos32_lr0.0060719894934413024_E_S_WWC_WM_397_generated_denorm,0.3564955713,,,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_E_S_WWC_WM_397_generated_denorm,0.3374985599,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_E_S_WWC_WM_397_original_denorm,0.3520660052,test_meshes_dgs3.9847495044325627_sts1_nis100_nol0_nos32_lr0.0060719894934413024_E_S_WWC_WM_397_generated_denorm,0.3551618059,,
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cfd_workflow_20261012/givenshape_analyse.py

@@ -0,0 +1,301 @@
+#!/usr/bin/env python3
+"""
+Script to analyze OpenFOAM simulation results from givenshape experiments.
+Extracts drag coefficients from original and generated meshes and calculates improvements.
+"""
+
+import os
+import csv
+import glob
+from pathlib import Path
+import re
+
+
+def extract_avg_drag(avg_drag_file):
+    """
+    Extract drag value from avg_drag.txt file.
+    
+    Args:
+        avg_drag_file: Path to avg_drag.txt file
+        
+    Returns:
+        float: Drag value, or None if extraction fails
+    """
+    try:
+        with open(avg_drag_file, 'r') as f:
+            content = f.read().strip()
+            # Try to convert the content to float
+            drag_value = float(content)
+            return drag_value
+    except Exception as e:
+        print(f"Error reading {avg_drag_file}: {e}")
+        return None
+
+
+def extract_force_coeffs(force_coeffs_file):
+    """
+    Extract Cd (drag coefficient) from forceCoeffs.dat file.
+    Reads the last line and extracts the third column (Cd).
+    
+    File format:
+    # Time  Cm  Cd  Cl  Cl(f)  Cl(r)
+    2500  -0.4757  0.2554  0.0982  -0.4266  0.5249
+    
+    Args:
+        force_coeffs_file: Path to postProcessing/car/0/forceCoeffs.dat file
+        
+    Returns:
+        float: Cd value, or None if extraction fails
+    """
+    try:
+        with open(force_coeffs_file, 'r') as f:
+            lines = f.readlines()
+            
+            # Find the last non-empty line that's not a comment
+            for line in reversed(lines):
+                line = line.strip()
+                # Skip empty lines and comments
+                if not line or line.startswith('#'):
+                    continue
+                
+                # Split the line and extract the third column (index 2 - Cd column)
+                parts = line.split()
+                if len(parts) >= 3:
+                    cd_value = float(parts[2])
+                    return cd_value
+                    
+        print(f"No valid data found in {force_coeffs_file}")
+        return None
+    except Exception as e:
+        print(f"Error reading {force_coeffs_file}: {e}")
+        return None
+
+
+def extract_id_from_folder(folder_name):
+    """
+    Extract ID from folder name.
+    Assumes format: test_meshes_..._<ID>_original_denorm or test_meshes_..._<ID>_generated_denorm
+    Extracts the hash ID which is the second-to-last part when split by '_'.
+    
+    Args:
+        folder_name: Name of the folder
+        
+    Returns:
+        str: ID or folder name if extraction fails
+    """
+    try:
+        parts = folder_name.split('_')
+        # The ID is the second-to-last part (before "original/generated" and "denorm")
+        if len(parts) >= 3:
+            return parts[-3]
+        return folder_name
+    except Exception as e:
+        print(f"Error extracting ID from {folder_name}: {e}")
+        return folder_name
+
+
+def process_experiment_folder(exp_folder):
+    """
+    Process a single experiment folder containing original and generated subfolders.
+    
+    Args:
+        exp_folder: Path to experiment folder
+        
+    Returns:
+        dict: Dictionary with extracted data, or None if processing fails
+    """
+    exp_path = Path(exp_folder)
+    
+    # Find original and generated subfolders by pattern
+    original_folders = list(exp_path.glob('*_original_denorm'))
+    generated_folders = list(exp_path.glob('*_generated_denorm'))
+    
+    if not original_folders or not generated_folders:
+        print(f"Skipping {exp_folder}: Missing original or generated subfolder")
+        return None
+    
+    # Use the first matching folders (should only be one pair per experiment)
+    original_path = original_folders[0]
+    generated_path = generated_folders[0]
+    
+    # Extract ID from the original subfolder name
+    case_id = extract_id_from_folder(original_path.name)
+    
+    result = {
+        'id': case_id,
+        'experiment_folder': exp_path.name,
+        'original_subfolder': original_path.name,
+        'generated_subfolder': generated_path.name,
+        'original_avg_drag': None,
+        'original_cd': None,
+        'generated_avg_drag': None,
+        'generated_cd': None,
+        'improvement_avg_drag': None,
+        'improvement_cd': None
+    }
+    
+    # Process original folder
+    original_avg_drag_file = original_path / 'avg_drag.txt'
+    original_force_coeffs_file = original_path / 'postProcessing' / 'car' / '0' / 'forceCoeffs.dat'
+    
+    if original_avg_drag_file.exists():
+        result['original_avg_drag'] = extract_avg_drag(original_avg_drag_file)
+    else:
+        print(f"  Missing: {original_avg_drag_file}")
+    
+    if original_force_coeffs_file.exists():
+        result['original_cd'] = extract_force_coeffs(original_force_coeffs_file)
+    else:
+        print(f"  Missing: {original_force_coeffs_file}")
+    
+    # Process generated folder
+    generated_avg_drag_file = generated_path / 'avg_drag.txt'
+    generated_force_coeffs_file = generated_path / 'postProcessing' / 'car' / '0' / 'forceCoeffs.dat'
+    
+    if generated_avg_drag_file.exists():
+        result['generated_avg_drag'] = extract_avg_drag(generated_avg_drag_file)
+    else:
+        print(f"  Missing: {generated_avg_drag_file}")
+    
+    if generated_force_coeffs_file.exists():
+        result['generated_cd'] = extract_force_coeffs(generated_force_coeffs_file)
+    else:
+        print(f"  Missing: {generated_force_coeffs_file}")
+    
+    # Calculate improvement percentages
+    # Improvement = (Original - Generated) / Original * 100
+    # Positive percentage means reduction (improvement)
+    
+    if result['original_avg_drag'] is not None and result['generated_avg_drag'] is not None:
+        if result['original_avg_drag'] != 0:
+            improvement = (result['original_avg_drag'] - result['generated_avg_drag']) / result['original_avg_drag'] * 100
+            result['improvement_avg_drag'] = f"{improvement:.2f}%"
+        else:
+            result['improvement_avg_drag'] = "N/A"
+    
+    if result['original_cd'] is not None and result['generated_cd'] is not None:
+        if result['original_cd'] != 0:
+            improvement = (result['original_cd'] - result['generated_cd']) / result['original_cd'] * 100
+            result['improvement_cd'] = f"{improvement:.2f}%"
+        else:
+            result['improvement_cd'] = "N/A"
+    
+    return result
+
+
+def main():
+    """
+    Main function to process all experiment folders and generate CSV report.
+    """
+    # Get the current directory (openfoam folder)
+    base_dir = Path(__file__).parent
+    
+    # Pattern to match experiment folders
+    # pattern = "test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all*"
+    pattern = "test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all*"
+    
+    print(f"Searching for folders matching: {pattern}")
+    print(f"Base directory: {base_dir}")
+    
+    # Find all matching experiment folders
+    exp_folders = glob.glob(str(base_dir / pattern))
+    exp_folders.sort()
+    
+    print(f"Found {len(exp_folders)} experiment folders\n")
+    
+    if not exp_folders:
+        print("No matching folders found!")
+        return
+    
+    # Process each experiment folder
+    results = []
+    for exp_folder in exp_folders:
+        print(f"Processing: {Path(exp_folder).name}")
+        result = process_experiment_folder(exp_folder)
+        if result is not None:
+            # Only add if we have at least some data
+            if any([result['original_avg_drag'], result['original_cd'], 
+                   result['generated_avg_drag'], result['generated_cd']]):
+                results.append(result)
+                print(f"  ✓ Successfully processed")
+            else:
+                print(f"  ✗ No valid data found")
+        print()
+    
+    # Write results to CSV
+    output_file = base_dir / 'givenshape_drivaernet_analysis_results.csv'
+    
+    with open(output_file, 'w', newline='') as csvfile:
+        fieldnames = [
+            'ID',
+            'Experiment_Folder',
+            'Original_Subfolder',
+            'Generated_Subfolder',
+            'Original_AvgDrag',
+            'Generated_AvgDrag',
+            'Improvement_AvgDrag',
+            'Original_Cd',
+            'Generated_Cd',
+            'Improvement_Cd'
+        ]
+        
+        writer = csv.DictWriter(csvfile, fieldnames=fieldnames)
+        writer.writeheader()
+        
+        for result in results:
+            writer.writerow({
+                'ID': result['id'],
+                'Experiment_Folder': result['experiment_folder'],
+                'Original_Subfolder': result['original_subfolder'],
+                'Generated_Subfolder': result['generated_subfolder'],
+                'Original_AvgDrag': result['original_avg_drag'] if result['original_avg_drag'] is not None else 'N/A',
+                'Generated_AvgDrag': result['generated_avg_drag'] if result['generated_avg_drag'] is not None else 'N/A',
+                'Improvement_AvgDrag': result['improvement_avg_drag'] if result['improvement_avg_drag'] is not None else 'N/A',
+                'Original_Cd': result['original_cd'] if result['original_cd'] is not None else 'N/A',
+                'Generated_Cd': result['generated_cd'] if result['generated_cd'] is not None else 'N/A',
+                'Improvement_Cd': result['improvement_cd'] if result['improvement_cd'] is not None else 'N/A'
+            })
+    
+    print(f"Results saved to: {output_file}")
+    print(f"Total cases processed: {len(results)}")
+    
+    # Print summary statistics
+    if results:
+        print("\n=== Summary Statistics ===")
+        
+        # Calculate average improvements
+        avg_drag_improvements = []
+        cd_improvements = []
+        
+        for result in results:
+            if result['improvement_avg_drag'] and result['improvement_avg_drag'] != 'N/A':
+                try:
+                    val = float(result['improvement_avg_drag'].rstrip('%'))
+                    avg_drag_improvements.append(val)
+                except:
+                    pass
+            
+            if result['improvement_cd'] and result['improvement_cd'] != 'N/A':
+                try:
+                    val = float(result['improvement_cd'].rstrip('%'))
+                    cd_improvements.append(val)
+                except:
+                    pass
+        
+        if avg_drag_improvements:
+            print(f"\nAvg Drag Improvements:")
+            print(f"  Mean: {sum(avg_drag_improvements)/len(avg_drag_improvements):.2f}%")
+            print(f"  Min: {min(avg_drag_improvements):.2f}%")
+            print(f"  Max: {max(avg_drag_improvements):.2f}%")
+            print(f"  Count: {len(avg_drag_improvements)}")
+        
+        if cd_improvements:
+            print(f"\nCd Improvements:")
+            print(f"  Mean: {sum(cd_improvements)/len(cd_improvements):.2f}%")
+            print(f"  Min: {min(cd_improvements):.2f}%")
+            print(f"  Max: {max(cd_improvements):.2f}%")
+            print(f"  Count: {len(cd_improvements)}")
+
+
+if __name__ == '__main__':
+    main()

cfd_workflow_20261012/givenshape_analysis_results.csv

@@ -0,0 +1,42 @@
+ID,Experiment_Folder,Original_Subfolder,Generated_Subfolder,Original_AvgDrag,Generated_AvgDrag,Improvement_AvgDrag,Original_Cd,Generated_Cd,Improvement_Cd
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cfd_workflow_20261012/givenshape_drivaernet_analysis_results.csv

@@ -0,0 +1,57 @@
+ID,Experiment_Folder,Original_Subfolder,Generated_Subfolder,Original_AvgDrag,Generated_AvgDrag,Improvement_AvgDrag,Original_Cd,Generated_Cd,Improvement_Cd
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+2493,test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_7,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_F_D_WM_WW_2493_original_denorm,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_F_D_WM_WW_2493_generated_denorm,0.35904919347774805,0.28019112347804576,21.96%,0.3435865296271,0.2802844632967,18.42%
+3414,test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_8,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_F_D_WM_WW_3414_original_denorm,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_F_D_WM_WW_3414_generated_denorm,0.3022939227810918,0.28552339733010923,5.55%,0.3016447683857,0.2901400324508,3.81%
+3794,test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_9,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_F_D_WM_WW_3794_original_denorm,test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_F_D_WM_WW_3794_generated_denorm,0.3243127436977012,0.3250608707953852,-0.23%,0.3272406538254,0.3352151000126,-2.44%

cfd_workflow_20261012/move_stl.py

@@ -0,0 +1,193 @@
+#!/usr/bin/env python3
+"""
+STL File Translation Tool
+Read STL files, apply given translation, and overwrite the source file
+"""
+
+import numpy as np
+import argparse
+import os
+import sys
+
+try:
+    import trimesh
+except ImportError:
+    print("Error: trimesh library not found. Please install it with: pip install trimesh")
+    sys.exit(1)
+
+def read_stl(filepath):
+    """
+    Read STL file using trimesh
+    
+    Args:
+        filepath: STL file path
+        
+    Returns:
+        mesh: trimesh.Trimesh object
+    """
+    if not os.path.exists(filepath):
+        raise FileNotFoundError(f"STL file not found: {filepath}")
+    
+    try:
+        mesh = trimesh.load_mesh(filepath)
+        print(f"Successfully loaded STL file: {len(mesh.vertices)} vertices, {len(mesh.faces)} faces")
+        return mesh
+    except Exception as e:
+        raise Exception(f"Failed to load STL file: {e}")
+
+def write_stl(mesh, filepath):
+    """
+    Write mesh to STL file using trimesh
+    
+    Args:
+        mesh: trimesh.Trimesh object
+        filepath: output file path
+    """
+    try:
+        mesh.export(filepath)
+        print(f"Successfully exported STL file: {filepath}")
+    except Exception as e:
+        raise Exception(f"Failed to export STL file: {e}")
+
+def apply_translation(mesh, translation):
+    """
+    Apply translation to mesh vertices
+    
+    Args:
+        mesh: trimesh.Trimesh object
+        translation: translation vector [dx, dy, dz]
+        
+    Returns:
+        translated_mesh: translated trimesh.Trimesh object
+    """
+    translation = np.array(translation)
+    if translation.shape != (3,):
+        raise ValueError("Translation vector must be a 3-element array: [dx, dy, dz]")
+    
+    # Create a copy of the mesh to avoid modifying the original
+    translated_mesh = mesh.copy()
+    translated_mesh.vertices += translation
+    
+    return translated_mesh
+
+def move_stl(filepath, translation, output_format='auto'):
+    """
+    Move mesh in STL file and overwrite the original file
+    
+    Args:
+        filepath: STL file path
+        translation: translation vector [dx, dy, dz]
+        output_format: output format ('auto' for same as input)
+    """
+    print(f"Processing STL file: {filepath}")
+    print(f"Translation vector: {translation}")
+    
+    # Read STL file
+    try:
+        mesh = read_stl(filepath)
+    except Exception as e:
+        print(f"Failed to read STL file: {e}")
+        return False
+    
+    # Apply translation
+    try:
+        translated_mesh = apply_translation(mesh, translation)
+        print(f"Successfully applied translation")
+        
+        # Display bounding box before and after transformation
+        original_min = np.min(mesh.vertices, axis=0)
+        original_max = np.max(mesh.vertices, axis=0)
+        translated_min = np.min(translated_mesh.vertices, axis=0)
+        translated_max = np.max(translated_mesh.vertices, axis=0)
+        
+        print(f"Original bounding box: min={original_min}, max={original_max}")
+        print(f"Translated bounding box: min={translated_min}, max={translated_max}")
+        
+    except Exception as e:
+        print(f"Failed to apply translation: {e}")
+        return False
+    
+    # Create backup (optional)
+    # backup_path = filepath + '.backup'
+    # try:
+    #     import shutil
+    #     shutil.copy2(filepath, backup_path)
+    #     print(f"Created backup file: {backup_path}")
+    # except Exception as e:
+    #     print(f"Failed to create backup file: {e}")
+    #     print("Continuing...")
+    
+    # Write STL file (overwrite original file)
+    try:
+        write_stl(translated_mesh, filepath)
+        print(f"Successfully wrote STL file: {filepath}")
+        return True
+        
+    except Exception as e:
+        print(f"Failed to write STL file: {e}")
+        
+        # Try to restore from backup
+        if os.path.exists(backup_path):
+            try:
+                import shutil
+                shutil.copy2(backup_path, filepath)
+                print(f"Restored original file from backup")
+            except Exception as restore_error:
+                print(f"Failed to restore backup: {restore_error}")
+        
+        return False
+
+def main():
+    """
+    Main function - command line interface
+    """
+    parser = argparse.ArgumentParser(
+        description='Move mesh in STL file and overwrite the original file',
+        formatter_class=argparse.RawDescriptionHelpFormatter,
+        epilog="""
+Example usage:
+  python move_stl.py /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground/base_E_S_WWC_WM_005/constant/triSurface/car.stl --translation 0.0 0.0 -0.3
+  
+  python move_stl.py mesh.stl -t 1.531090 0.0 -0.3
+  python move_stl.py mesh.stl -t 0 0 5
+        """
+    )
+    
+    parser.add_argument('stl_file', 
+                       help='STL file path to process')
+    
+    parser.add_argument('-t', '--translation', 
+                       nargs=3, 
+                       type=float, 
+                       required=True,
+                       metavar=('DX', 'DY', 'DZ'),
+                       help='Translation vector [dx, dy, dz]')
+    
+    parser.add_argument('--no-backup', 
+                       action='store_true',
+                       help='Do not create backup file')
+    
+    args = parser.parse_args()
+    
+    # Check if file exists
+    if not os.path.exists(args.stl_file):
+        print(f"Error: STL file not found: {args.stl_file}")
+        sys.exit(1)
+    
+    # Check if file is writable
+    if not os.access(args.stl_file, os.W_OK):
+        print(f"Error: No write permission: {args.stl_file}")
+        sys.exit(1)
+    
+    # Execute translation operation
+    success = move_stl(args.stl_file, args.translation)
+    
+    if success:
+        print("STL file translation completed!")
+        sys.exit(0)
+    else:
+        print("STL file translation failed!")
+        sys.exit(1)
+
+if __name__ == "__main__":
+    main()

cfd_workflow_20261012/organize_drag_results.py

@@ -0,0 +1,229 @@
+#!/usr/bin/env python3
+"""
+Script to organize drag coefficient results from OpenFOAM simulations into a CSV file.
+
+This script scans all test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_* 
+folders, extracts drag coefficients from avg_drag.txt files, and organizes them by ID and parameters.
+"""
+
+import os
+import re
+import csv
+from pathlib import Path
+from collections import defaultdict
+from typing import Dict, List, Tuple
+
+def parse_subfolder_name(subfolder_name: str) -> Tuple[str, str, str]:
+    """
+    Parse subfolder name to extract ID, parameters, and type.
+    
+    Example input: test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol0_nos32_lr0.0060719894934413024_F_S_WWC_WM_087_generated_denorm
+    Returns: ('F_S_WWC_WM_087', 'dgs3.9847495044325627_sts0.25_nis100_nol0_nos32_lr0.0060719894934413024', 'generated')
+    
+    Example input: test_meshes_dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024_F_S_WWC_WM_087_original_denorm
+    Returns: ('F_S_WWC_WM_087', 'dgs3.9847495044325627_sts0.25_nis100_nol39_nos32_lr0.0060719894934413024', 'original')
+    """
+    # Remove 'test_meshes_' prefix
+    name = subfolder_name.replace('test_meshes_', '')
+    
+    # Determine type (generated or original)
+    mesh_type = None
+    if name.endswith('_generated_denorm'):
+        name = name.replace('_generated_denorm', '')
+        mesh_type = 'generated'
+    elif name.endswith('_original_denorm'):
+        name = name.replace('_original_denorm', '')
+        mesh_type = 'original'
+    else:
+        return None, None, None
+    
+    # Pattern to match ID (e.g., F_S_WWC_WM_087, E_S_WW_WM_560)
+    # ID pattern: Letter_Letter_Letters_Letters_Numbers
+    id_pattern = r'([A-Z]_[A-Z]_[A-Z]+_[A-Z]+_\d+)$'
+    match = re.search(id_pattern, name)
+    
+    if match:
+        shape_id = match.group(1)
+        # Everything before the ID is the parameters
+        params = name[:match.start()].rstrip('_')
+        return shape_id, params, mesh_type
+    else:
+        return None, None, None
+
+def extract_avg_drag(avg_drag_path: Path) -> float:
+    """
+    Extract average drag coefficient from avg_drag.txt file.
+    """
+    try:
+        with open(avg_drag_path, 'r') as f:
+            content = f.read().strip()
+            return float(content)
+    except (FileNotFoundError, ValueError) as e:
+        print(f"Warning: Could not read {avg_drag_path}: {e}")
+        return None
+
+def parse_parameters(params_str: str) -> Dict[str, float]:
+    """
+    Parse parameter string into a dictionary for sorting.
+    
+    Example: 'dgs3.9847495044325627_sts0.25_nis100_nol0_nos32_lr0.0060719894934413024'
+    Returns: {'dgs': 3.9847495044325627, 'sts': 0.25, 'nis': 100, ...}
+    """
+    param_dict = {}
+    # Split by underscore and parse key-value pairs
+    parts = params_str.split('_')
+    for part in parts:
+        # Match pattern like 'dgs3.98...' or 'sts0.25' or 'nis100'
+        match = re.match(r'([a-z]+)([\d.]+)', part)
+        if match:
+            key, value = match.groups()
+            param_dict[key] = float(value)
+    return param_dict
+
+def main():
+    # Base directory containing all test folders
+    base_dir = Path('/mnt/cvlab/mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow')
+    
+    # Pattern to match test folders
+    test_folder_pattern = 'test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_*'
+    
+    # Dictionary to store results: {shape_id: {params: {mesh_type: (subfolder_name, avg_drag)}}}
+    results = defaultdict(lambda: defaultdict(dict))
+    
+    # Scan all test folders
+    test_folders = sorted(base_dir.glob(test_folder_pattern))
+    print(f"Found {len(test_folders)} test folders")
+    
+    for test_folder in test_folders:
+        if not test_folder.is_dir():
+            continue
+        
+        print(f"Processing {test_folder.name}...")
+        
+        # Scan subfolders within each test folder
+        for subfolder in test_folder.iterdir():
+            if not subfolder.is_dir():
+                continue
+            
+            # Parse subfolder name
+            shape_id, params, mesh_type = parse_subfolder_name(subfolder.name)
+            
+            if shape_id is None or params is None or mesh_type is None:
+                print(f"  Warning: Could not parse {subfolder.name}")
+                continue
+            
+            # Check if avg_drag.txt exists
+            avg_drag_path = subfolder / 'avg_drag.txt'
+            if not avg_drag_path.exists():
+                print(f"  Warning: {avg_drag_path} does not exist")
+                continue
+            
+            # Extract average drag
+            avg_drag = extract_avg_drag(avg_drag_path)
+            if avg_drag is None:
+                continue
+            
+            # Store result
+            results[shape_id][params][mesh_type] = (subfolder.name, avg_drag)
+    
+    print(f"\nFound {len(results)} unique shape IDs")
+    
+    # Prepare CSV output
+    output_file = base_dir / 'drag_results_organized.csv'
+    
+    # Collect all unique parameter sets across all IDs
+    all_params = set()
+    for shape_id, param_dict in results.items():
+        all_params.update(param_dict.keys())
+    
+    # Sort parameters
+    # We'll sort by the parameter values (dgs, sts, nis, nol, nos, lr)
+    def param_sort_key(params_str):
+        param_dict = parse_parameters(params_str)
+        # Sort by: dgs, sts, nis, nol, nos, lr
+        return (
+            param_dict.get('dgs', 0),
+            param_dict.get('sts', 0),
+            param_dict.get('nis', 0),
+            param_dict.get('nol', 0),
+            param_dict.get('nos', 0),
+            param_dict.get('lr', 0)
+        )
+    
+    sorted_params = sorted(all_params, key=param_sort_key)
+    
+    # Write CSV
+    with open(output_file, 'w', newline='') as csvfile:
+        # Create header: ID, param1_name_gen, param1_drag_gen, param1_name_ori, param1_drag_ori, ...
+        header = ['Shape_ID']
+        for i, params in enumerate(sorted_params, 1):
+            header.append(f'Name_{i}_generated')
+            header.append(f'AvgDrag_{i}_generated')
+            header.append(f'Name_{i}_original')
+            header.append(f'AvgDrag_{i}_original')
+        
+        writer = csv.writer(csvfile)
+        writer.writerow(header)
+        
+        # Write data rows
+        for shape_id in sorted(results.keys()):
+            row = [shape_id]
+            param_dict = results[shape_id]
+            
+            for params in sorted_params:
+                if params in param_dict:
+                    mesh_types = param_dict[params]
+                    
+                    # Add generated data
+                    if 'generated' in mesh_types:
+                        subfolder_name, avg_drag = mesh_types['generated']
+                        row.append(subfolder_name)
+                        row.append(f'{avg_drag:.10f}')
+                    else:
+                        row.append('')
+                        row.append('')
+                    
+                    # Add original data
+                    if 'original' in mesh_types:
+                        subfolder_name, avg_drag = mesh_types['original']
+                        row.append(subfolder_name)
+                        row.append(f'{avg_drag:.10f}')
+                    else:
+                        row.append('')
+                        row.append('')
+                else:
+                    # No data for this param set
+                    row.append('')
+                    row.append('')
+                    row.append('')
+                    row.append('')
+            
+            writer.writerow(row)
+    
+    print(f"\nResults written to {output_file}")
+    print(f"Total shape IDs: {len(results)}")
+    print(f"Total parameter sets: {len(sorted_params)}")
+    
+    # Count generated and original entries
+    total_generated = 0
+    total_original = 0
+    for shape_id, param_dict in results.items():
+        for params, mesh_types in param_dict.items():
+            if 'generated' in mesh_types:
+                total_generated += 1
+            if 'original' in mesh_types:
+                total_original += 1
+    
+    print(f"Total generated entries: {total_generated}")
+    print(f"Total original entries: {total_original}")
+    
+    # Print summary
+    print("\nSummary of first 5 shape IDs:")
+    for i, shape_id in enumerate(sorted(results.keys())[:5]):
+        param_dict = results[shape_id]
+        gen_count = sum(1 for p in param_dict.values() if 'generated' in p)
+        ori_count = sum(1 for p in param_dict.values() if 'original' in p)
+        print(f"  {shape_id}: {len(param_dict)} parameter sets ({gen_count} generated, {ori_count} original)")
+
+if __name__ == '__main__':
+    main()

cfd_workflow_20261012/render_agpg60_cfd_shape.py

@@ -0,0 +1,99 @@
+#!/usr/bin/env python3
+"""Render the exact shapes that entered CFD: AnchorGen@60 vs PhysGen@60.
+
+Per case, AG and PG meshes SHARE one parallel-projection camera (union bbox
+center + scale) per view, so relative size/deformation is faithful. Views:
+oblique (3D form), side (matches SIDE sketch silhouette), front (width).
+Labels carry the real OpenFOAM9 pressure Cd (cd_pressure) for each mesh.
+Convention copied from render_compare20.py (color #789bb7, parallel_scale=0.58*extent).
+"""
+from pathlib import Path
+import json
+import numpy as np
+import pyvista as pv
+from PIL import Image, ImageDraw, ImageFont
+
+CFD = Path("/mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow")
+OUT = CFD / "render_agpg60_cfd_shape_20260925"
+(OUT / "panels").mkdir(parents=True, exist_ok=True)
+
+CASES = ["pair0008_source001", "pair0116_source019", "pair0330_source055"]
+
+def ag_mesh(c):
+    return json.loads((CFD/"anchorgen_side60_20260923_v3/results"/c/"PREPARED.json").read_text())["states"]["final60"]["input"]["path"]
+def pg_mesh(c):
+    return json.loads((CFD/"physgen60_priority_20260924_v1/results"/c/"physgen60/PREPARED.json").read_text())["input_source"]["mesh"]
+def ag_cdp(c):
+    return json.loads((CFD/"anchorgen_side60_20260923_v3/results"/c/"final60/CFD_RESULT.json").read_text())["cd_pressure"]
+def pg_cdp(c):
+    return json.loads((CFD/"physgen60_priority_20260924_v1/results"/c/"physgen60/CFD_RESULT.json").read_text())["cd_pressure"]
+
+VIEWS = [("oblique", (1.0, -1.0, 0.65)), ("side", (0.0, -1.0, 0.0)), ("front", (-1.0, 0.0, 0.0))]
+MESH_COLOR = "#789bb7"
+PW, PH = 360, 320
+HEAD_H, LAB_H = 30, 40
+NCOL = len(VIEWS) * 2                     # AG,PG per view
+ROW_H = HEAD_H + LAB_H + PH
+SHEET_W = NCOL * PW
+
+try:
+    F_HEAD = ImageFont.truetype("/usr/share/fonts/truetype/dejavu/DejaVuSans-Bold.ttf", 20)
+    F_LAB = ImageFont.truetype("/usr/share/fonts/truetype/dejavu/DejaVuSans-Bold.ttf", 15)
+    F_SUB = ImageFont.truetype("/usr/share/fonts/truetype/dejavu/DejaVuSans.ttf", 13)
+except OSError:
+    F_HEAD = F_LAB = F_SUB = ImageFont.load_default()
+
+def bounds_union(meshes):
+    b = np.array([m.bounds for m in meshes])
+    lo = b[:, [0, 2, 4]].min(0); hi = b[:, [1, 3, 5]].max(0)
+    return (lo + hi) / 2.0, float((hi - lo).max())
+
+def render_mesh(mesh, direction, center, extent):
+    p = pv.Plotter(off_screen=True, window_size=(PW - 16, PH))
+    p.set_background("white")
+    p.add_mesh(mesh, color=MESH_COLOR, smooth_shading=True, specular=0.12)
+    d = np.array(direction, float); d /= np.linalg.norm(d)
+    pos = center + d * extent * 3.0
+    p.camera_position = [tuple(pos), tuple(center), (0.0, 0.0, 1.0)]
+    p.enable_parallel_projection()
+    p.camera.parallel_scale = 0.58 * extent
+    shot = p.screenshot(return_img=True); p.close()
+    return Image.fromarray(shot).convert("RGB")
+
+qc = []
+rows = []
+for c in CASES:
+    agp, pgp = ag_mesh(c), pg_mesh(c)
+    agcd, pgcd = ag_cdp(c), pg_cdp(c)
+    ag, pg = pv.read(agp), pv.read(pgp)
+    center, extent = bounds_union([ag, pg])
+    winner = "AnchorGen" if agcd < pgcd else "PhysGen"
+    row = Image.new("RGB", (SHEET_W, ROW_H), "white")
+    dr = ImageDraw.Draw(row)
+    dr.text((10, 5), f"{c}   AG60 cd_p={agcd:.5f}   PG60 cd_p={pgcd:.5f}   lower(better)={winner}",
+            fill="black", font=F_HEAD)
+    col = 0
+    for vname, direction in VIEWS:
+        for tag, mesh, cd in [("AnchorGen@60", ag, agcd), ("PhysGen@60", pg, pgcd)]:
+            img = render_mesh(mesh, direction, center, extent)
+            x0 = col * PW
+            lab_color = "red" if ((tag.startswith("AnchorGen")) == (agcd < pgcd)) else "black"
+            dr.text((x0 + 8, HEAD_H + 2), f"{tag}", fill=lab_color, font=F_LAB)
+            dr.text((x0 + 8, HEAD_H + 20), f"{vname}  cd_p {cd:.5f}", fill="#333333", font=F_SUB)
+            row.paste(img, (x0 + (PW - img.width)//2, HEAD_H + LAB_H + (PH - img.height)//2))
+            img.save(OUT/"panels"/f"{c}_{tag.split('@')[0]}_{vname}.png")
+            col += 1
+    row.save(OUT / f"row_{c}.png")
+    rows.append(row)
+    qc.append(dict(case=c, ag_mesh=agp, pg_mesh=pgp, ag_cd_pressure=agcd, pg_cd_pressure=pgcd,
+                   ag_points=int(ag.n_points), ag_faces=int(ag.n_cells),
+                   pg_points=int(pg.n_points), pg_faces=int(pg.n_cells),
+                   union_extent=extent, lower_drag=winner))
+    print("RENDERED", c, flush=True)
+
+sheet = Image.new("RGB", (SHEET_W, ROW_H * len(rows)), "white")
+for i, im in enumerate(rows):
+    sheet.paste(im, (0, i * ROW_H))
+sheet.save(OUT / "overview_ag60_vs_pg60_cfd_shape.png")
+(OUT / "QC.json").write_text(json.dumps(qc, indent=2) + "\n")
+print("DONE ->", OUT / "overview_ag60_vs_pg60_cfd_shape.png")

cfd_workflow_20261012/resource_pods_20260923.json

@@ -0,0 +1,8 @@
+{
+    "apiVersion": "v1",
+    "items": [],
+    "kind": "List",
+    "metadata": {
+        "resourceVersion": ""
+    }
+}

cfd_workflow_20261012/resource_snapshot_20260923.py

@@ -0,0 +1,11 @@
+import subprocess,re,json
+txt=subprocess.check_output(['kubectl','describe','nodes'],universal_newlines=True)
+for block in re.split(r'^Name:\s*',txt,flags=re.M)[1:]:
+ name=block.splitlines()[0]
+ if not any(x in name for x in ['gpu2']):continue
+ alloc=block.split('Allocatable:')[-1].split('System Info:')[0]
+ cpu=re.search(r'^\s+cpu:\s+(\S+)',alloc,re.M);mem=re.search(r'^\s+memory:\s+(\S+)',alloc,re.M)
+ used=block.split('Allocated resources:')[-1].split('Events:')[0]
+ line=re.search(r'^\s+cpu\s+(\S+)\s+\(([^)]+)\)',used,re.M)
+ ml=re.search(r'^\s+memory\s+(\S+)\s+\(([^)]+)\)',used,re.M)
+ print(name,'CPU',cpu[1] if cpu else '?','requested',line[1:3] if line else '?','memory',mem[1] if mem else '?','requested',ml[1:3] if ml else '?')

cfd_workflow_20261012/setup_simulation.sh

@@ -0,0 +1,218 @@
+#!/bin/bash
+
+# OpenFOAM Simulation Setup Script
+# Usage: ./setup_simulation.sh <xxx>
+# Where xxx is the subdirectory name under the outputs path
+# ./setup_simulation.sh gen_meshes_1002
+# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all
+# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all
+# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_512
+
+# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all
+
+set -e  # Exit on any error
+
+# Check if argument is provided
+if [ $# -ne 1 ]; then
+    echo "Usage: $0 <subdirectory_name>"
+    echo "Example: $0 gen_meshes_1002"
+    exit 1
+fi
+
+# Input parameter
+SUBDIR_NAME="$1"
+
+# Define paths
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+TEMPLATE_DIR="/mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/template"
+# OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Conditional/train_conditional_CLIPasso"
+OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Unconditional"
+
+SOURCE_DIR="${OUTPUT_BASE}/${SUBDIR_NAME}"
+
+echo "=== OpenFOAM Simulation Setup ==="
+echo "Subdirectory: ${SUBDIR_NAME}"
+echo "Source directory: ${SOURCE_DIR}"
+
+# Check if source directory exists
+if [ ! -d "${SOURCE_DIR}" ]; then
+    echo "Error: Source directory does not exist: ${SOURCE_DIR}"
+    exit 1
+fi
+
+# Check if template directory exists
+if [ ! -d "${TEMPLATE_DIR}" ]; then
+    echo "Error: Template directory does not exist: ${TEMPLATE_DIR}"
+    echo "Please update TEMPLATE_DIR in the script to point to the correct template location."
+    exit 1
+fi
+
+# Create main SUBDIR_NAME directory
+MAIN_DIR="${SCRIPT_DIR}/${SUBDIR_NAME}"
+echo "Creating main directory: ${MAIN_DIR}"
+
+if [ -d "${MAIN_DIR}" ]; then
+    echo "Warning: Main directory already exists: ${MAIN_DIR}"
+    read -p "Do you want to overwrite it? (y/N): " -n 1 -r
+    echo
+    if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+        echo "Exiting without making changes."
+        exit 0
+    fi
+    echo "Removing existing directory..."
+    rm -rf "${MAIN_DIR}"
+fi
+
+mkdir -p "${MAIN_DIR}"
+
+# Find all subdirectories in the source directory
+echo "Searching for subdirectories in: ${SOURCE_DIR}"
+SUBDIRS=($(find "${SOURCE_DIR}" -maxdepth 1 -type d ! -path "${SOURCE_DIR}"))
+
+if [ ${#SUBDIRS[@]} -eq 0 ]; then
+    echo "Error: No subdirectories found in ${SOURCE_DIR}"
+    exit 1
+fi
+
+echo "Found ${#SUBDIRS[@]} subdirectory(ies):"
+for subdir in "${SUBDIRS[@]}"; do
+    echo "  $(basename "${subdir}")"
+done
+
+# Process each subdirectory
+for SUBDIR_PATH in "${SUBDIRS[@]}"; do
+    # Extract the basename of the subdirectory
+    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
+    
+    # Find all STL files in this subdirectory
+    echo ""
+    echo "=== Processing subdirectory: ${SUBDIR_BASENAME} ==="
+    echo "Searching for *.stl files in: ${SUBDIR_PATH}"
+    STL_FILES=($(find "${SUBDIR_PATH}" -name "*.stl" -type f))
+    
+    if [ ${#STL_FILES[@]} -eq 0 ]; then
+        echo "Warning: No STL files found in ${SUBDIR_PATH}, skipping..."
+        continue
+    fi
+    
+    echo "Found ${#STL_FILES[@]} STL file(s) in ${SUBDIR_BASENAME}:"
+    for stl_file in "${STL_FILES[@]}"; do
+        echo "  $(basename "${stl_file}")"
+    done
+    
+    # Process each STL file in this subdirectory
+    for STL_PATH in "${STL_FILES[@]}"; do
+        # Extract the base name of the STL file (without .stl extension)
+        STL_BASENAME=$(basename "${STL_PATH}" .stl)
+        
+        # Create simulation directory name using subdirectory basename + STL basename (as subdirectory of MAIN_DIR)
+        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
+        
+        echo ""
+        echo "--- Processing STL: ${STL_BASENAME} from ${SUBDIR_BASENAME} ---"
+        echo "Creating simulation directory: ${SIM_DIR}"
+        
+        # Check if simulation directory already exists
+        if [ -d "${SIM_DIR}" ]; then
+            echo "Warning: Simulation directory already exists: ${SIM_DIR}"
+            read -p "Do you want to overwrite it? (y/N): " -n 1 -r
+            echo
+            if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+                echo "Skipping ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+                continue
+            fi
+            echo "Removing existing directory..."
+            rm -rf "${SIM_DIR}"
+        fi
+        
+        # Copy template to simulation directory
+        echo "Copying template from: ${TEMPLATE_DIR}"
+        cp -r "${TEMPLATE_DIR}" "${SIM_DIR}"
+        
+        # Create triSurface directory if it doesn't exist
+        TRISURFACE_DIR="${SIM_DIR}/constant/triSurface"
+        # mkdir -p "${TRISURFACE_DIR}"
+        
+        # Copy and rename STL file
+        CAR_STL_PATH="${TRISURFACE_DIR}/car.stl"
+        echo "Copying STL file: ${STL_PATH} -> ${CAR_STL_PATH}"
+        cp "${STL_PATH}" "${CAR_STL_PATH}"
+        
+        # Verify the STL file was copied successfully
+        if [ ! -f "${CAR_STL_PATH}" ]; then
+            echo "Error: Failed to copy STL file to ${CAR_STL_PATH}"
+            continue
+        fi
+        
+        # Call setup_simulation function from sim.py
+        echo "Calling setup_simulation for: ${SIM_DIR}"
+        cd "${SCRIPT_DIR}"
+        
+        # Use Python to call the setup_simulation function
+        python3 -c "
+import sys
+sys.path.append('${SCRIPT_DIR}')
+from sim import setup_simulation
+import os
+
+simdir = '${SIM_DIR}'
+print(f'Setting up simulation for: {simdir}')
+
+try:
+    setup_simulation(simdir)
+    print(f'Successfully set up simulation for: {os.path.basename(simdir)}')
+except Exception as e:
+    print(f'Error setting up simulation for {os.path.basename(simdir)}: {e}')
+    sys.exit(1)
+"
+        
+        if [ $? -eq 0 ]; then
+            echo "✓ Successfully set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+        else
+            echo "✗ Failed to set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+            continue
+        fi
+        
+        # Print summary information
+        echo "Simulation directory created: ${SIM_DIR}"
+        echo "STL file location: ${CAR_STL_PATH}"
+        
+        # Check if config file was updated
+        CONFIG_FILE="${SIM_DIR}/include/config"
+        if [ -f "${CONFIG_FILE}" ]; then
+            echo "Configuration file updated: ${CONFIG_FILE}"
+            
+            # Extract and display some key parameters
+            echo "Key parameters:"
+            grep -E "Aref|vr[1-4]_" "${CONFIG_FILE}" 2>/dev/null || echo "  (Could not extract parameters)"
+        fi
+        
+    done
+done
+
+echo ""
+echo "=== Setup Complete ==="
+echo "Created simulation directories for all STL files in subdirectories of: ${SOURCE_DIR}"
+echo "You can now run OpenFOAM simulations in the created directories."
+
+# Optional: List all created simulation directories
+echo ""
+echo "Created simulation directories:"
+for SUBDIR_PATH in "${SUBDIRS[@]}"; do
+    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
+    STL_FILES_IN_SUBDIR=($(find "${SUBDIR_PATH}" -name "*.stl" -type f))
+    for STL_PATH in "${STL_FILES_IN_SUBDIR[@]}"; do
+        STL_BASENAME=$(basename "${STL_PATH}" .stl)
+        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
+        if [ -d "${SIM_DIR}" ]; then
+            echo "  ${SIM_DIR}"
+        fi
+    done
+done
+
+echo ""
+echo "Next steps:"
+echo "1. Navigate to a simulation directory"
+echo "2. Check the mesh quality: checkMesh"
+echo "3. Run the simulation: ./Allrun"
+echo "4. Monitor progress: tail -f log.simpleFoam"

cfd_workflow_20261012/setup_simulation_rebuttal.sh

@@ -0,0 +1,223 @@
+#!/bin/bash
+
+# OpenFOAM Simulation Setup Script
+# Usage: ./setup_simulation.sh <xxx>
+# Where xxx is the subdirectory name under the outputs path
+# ./setup_simulation.sh gen_meshes_1002
+# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all
+# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all
+# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_512
+
+# ./setup_simulation_rebuttal.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_rebuttal
+
+# ./setup_simulation_rebuttal.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_rebuttal_2
+
+# ./setup_simulation_rebuttal.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_rebuttal_R1
+
+
+set -e  # Exit on any error
+
+# Check if argument is provided
+if [ $# -ne 1 ]; then
+    echo "Usage: $0 <subdirectory_name>"
+    echo "Example: $0 gen_meshes_1002"
+    exit 1
+fi
+
+# Input parameter
+SUBDIR_NAME="$1"
+
+# Define paths
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+TEMPLATE_DIR="/mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/template"
+# OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Conditional/train_conditional_CLIPasso"
+OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Unconditional"
+
+SOURCE_DIR="${OUTPUT_BASE}/${SUBDIR_NAME}"
+
+echo "=== OpenFOAM Simulation Setup ==="
+echo "Subdirectory: ${SUBDIR_NAME}"
+echo "Source directory: ${SOURCE_DIR}"
+
+# Check if source directory exists
+if [ ! -d "${SOURCE_DIR}" ]; then
+    echo "Error: Source directory does not exist: ${SOURCE_DIR}"
+    exit 1
+fi
+
+# Check if template directory exists
+if [ ! -d "${TEMPLATE_DIR}" ]; then
+    echo "Error: Template directory does not exist: ${TEMPLATE_DIR}"
+    echo "Please update TEMPLATE_DIR in the script to point to the correct template location."
+    exit 1
+fi
+
+# Create main SUBDIR_NAME directory
+MAIN_DIR="${SCRIPT_DIR}/${SUBDIR_NAME}"
+echo "Creating main directory: ${MAIN_DIR}"
+
+if [ -d "${MAIN_DIR}" ]; then
+    echo "Warning: Main directory already exists: ${MAIN_DIR}"
+    read -p "Do you want to overwrite it? (y/N): " -n 1 -r
+    echo
+    if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+        echo "Exiting without making changes."
+        exit 0
+    fi
+    echo "Removing existing directory..."
+    rm -rf "${MAIN_DIR}"
+fi
+
+mkdir -p "${MAIN_DIR}"
+
+# Find all subdirectories in the source directory
+echo "Searching for subdirectories in: ${SOURCE_DIR}"
+SUBDIRS=($(find "${SOURCE_DIR}" -maxdepth 1 -type d ! -path "${SOURCE_DIR}"))
+
+if [ ${#SUBDIRS[@]} -eq 0 ]; then
+    echo "Error: No subdirectories found in ${SOURCE_DIR}"
+    exit 1
+fi
+
+echo "Found ${#SUBDIRS[@]} subdirectory(ies):"
+for subdir in "${SUBDIRS[@]}"; do
+    echo "  $(basename "${subdir}")"
+done
+
+# Process each subdirectory
+for SUBDIR_PATH in "${SUBDIRS[@]}"; do
+    # Extract the basename of the subdirectory
+    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
+    
+    # Find all STL files in this subdirectory
+    echo ""
+    echo "=== Processing subdirectory: ${SUBDIR_BASENAME} ==="
+    echo "Searching for *_generated_denorm.stl files in: ${SUBDIR_PATH}"
+    STL_FILES=($(find "${SUBDIR_PATH}" -name "*_generated_denorm.stl" -type f))
+    
+    if [ ${#STL_FILES[@]} -eq 0 ]; then
+        echo "Warning: No STL files found in ${SUBDIR_PATH}, skipping..."
+        continue
+    fi
+    
+    echo "Found ${#STL_FILES[@]} STL file(s) in ${SUBDIR_BASENAME}:"
+    for stl_file in "${STL_FILES[@]}"; do
+        echo "  $(basename "${stl_file}")"
+    done
+    
+    # Process each STL file in this subdirectory
+    for STL_PATH in "${STL_FILES[@]}"; do
+        # Extract the base name of the STL file (without .stl extension)
+        STL_BASENAME=$(basename "${STL_PATH}" .stl)
+        
+        # Create simulation directory name using subdirectory basename + STL basename (as subdirectory of MAIN_DIR)
+        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
+        
+        echo ""
+        echo "--- Processing STL: ${STL_BASENAME} from ${SUBDIR_BASENAME} ---"
+        echo "Creating simulation directory: ${SIM_DIR}"
+        
+        # Check if simulation directory already exists
+        if [ -d "${SIM_DIR}" ]; then
+            echo "Warning: Simulation directory already exists: ${SIM_DIR}"
+            read -p "Do you want to overwrite it? (y/N): " -n 1 -r
+            echo
+            if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+                echo "Skipping ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+                continue
+            fi
+            echo "Removing existing directory..."
+            rm -rf "${SIM_DIR}"
+        fi
+        
+        # Copy template to simulation directory
+        echo "Copying template from: ${TEMPLATE_DIR}"
+        cp -r "${TEMPLATE_DIR}" "${SIM_DIR}"
+        
+        # Create triSurface directory if it doesn't exist
+        TRISURFACE_DIR="${SIM_DIR}/constant/triSurface"
+        # mkdir -p "${TRISURFACE_DIR}"
+        
+        # Copy and rename STL file
+        CAR_STL_PATH="${TRISURFACE_DIR}/car.stl"
+        echo "Copying STL file: ${STL_PATH} -> ${CAR_STL_PATH}"
+        cp "${STL_PATH}" "${CAR_STL_PATH}"
+        
+        # Verify the STL file was copied successfully
+        if [ ! -f "${CAR_STL_PATH}" ]; then
+            echo "Error: Failed to copy STL file to ${CAR_STL_PATH}"
+            continue
+        fi
+        
+        # Call setup_simulation function from sim.py
+        echo "Calling setup_simulation for: ${SIM_DIR}"
+        cd "${SCRIPT_DIR}"
+        
+        # Use Python to call the setup_simulation function
+        python3 -c "
+import sys
+sys.path.append('${SCRIPT_DIR}')
+from sim import setup_simulation
+import os
+
+simdir = '${SIM_DIR}'
+print(f'Setting up simulation for: {simdir}')
+
+try:
+    setup_simulation(simdir)
+    print(f'Successfully set up simulation for: {os.path.basename(simdir)}')
+except Exception as e:
+    print(f'Error setting up simulation for {os.path.basename(simdir)}: {e}')
+    sys.exit(1)
+"
+        
+        if [ $? -eq 0 ]; then
+            echo "✓ Successfully set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+        else
+            echo "✗ Failed to set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+            continue
+        fi
+        
+        # Print summary information
+        echo "Simulation directory created: ${SIM_DIR}"
+        echo "STL file location: ${CAR_STL_PATH}"
+        
+        # Check if config file was updated
+        CONFIG_FILE="${SIM_DIR}/include/config"
+        if [ -f "${CONFIG_FILE}" ]; then
+            echo "Configuration file updated: ${CONFIG_FILE}"
+            
+            # Extract and display some key parameters
+            echo "Key parameters:"
+            grep -E "Aref|vr[1-4]_" "${CONFIG_FILE}" 2>/dev/null || echo "  (Could not extract parameters)"
+        fi
+        
+    done
+done
+
+echo ""
+echo "=== Setup Complete ==="
+echo "Created simulation directories for all STL files in subdirectories of: ${SOURCE_DIR}"
+echo "You can now run OpenFOAM simulations in the created directories."
+
+# Optional: List all created simulation directories
+echo ""
+echo "Created simulation directories:"
+for SUBDIR_PATH in "${SUBDIRS[@]}"; do
+    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
+    STL_FILES_IN_SUBDIR=($(find "${SUBDIR_PATH}" -name "*_generated_denorm.stl" -type f))
+    for STL_PATH in "${STL_FILES_IN_SUBDIR[@]}"; do
+        STL_BASENAME=$(basename "${STL_PATH}" .stl)
+        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
+        if [ -d "${SIM_DIR}" ]; then
+            echo "  ${SIM_DIR}"
+        fi
+    done
+done
+
+echo ""
+echo "Next steps:"
+echo "1. Navigate to a simulation directory"
+echo "2. Check the mesh quality: checkMesh"
+echo "3. Run the simulation: ./Allrun"
+echo "4. Monitor progress: tail -f log.simpleFoam"

cfd_workflow_20261012/setup_simulation_single.sh

@@ -0,0 +1,214 @@
+#!/bin/bash
+
+# OpenFOAM Simulation Setup Script
+# Usage: ./setup_simulation.sh <xxx>
+# Where xxx is the subdirectory name under the outputs path
+# ./setup_simulation.sh gen_meshes_1002
+# ./setup_simulation_single.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all
+
+
+set -e  # Exit on any error
+
+# Check if argument is provided
+if [ $# -ne 1 ]; then
+    echo "Usage: $0 <subdirectory_name>"
+    echo "Example: $0 gen_meshes_1002"
+    exit 1
+fi
+
+# Input parameter
+SUBDIR_NAME="$1"
+
+# Define paths
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+TEMPLATE_DIR="/mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/template"
+OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Conditional/train_conditional_CLIPasso"
+OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Unconditional"
+SOURCE_DIR="${OUTPUT_BASE}/${SUBDIR_NAME}"
+
+echo "=== OpenFOAM Simulation Setup ==="
+echo "Subdirectory: ${SUBDIR_NAME}"
+echo "Source directory: ${SOURCE_DIR}"
+
+# Check if source directory exists
+if [ ! -d "${SOURCE_DIR}" ]; then
+    echo "Error: Source directory does not exist: ${SOURCE_DIR}"
+    exit 1
+fi
+
+# Check if template directory exists
+if [ ! -d "${TEMPLATE_DIR}" ]; then
+    echo "Error: Template directory does not exist: ${TEMPLATE_DIR}"
+    echo "Please update TEMPLATE_DIR in the script to point to the correct template location."
+    exit 1
+fi
+
+# Create main SUBDIR_NAME directory
+MAIN_DIR="${SCRIPT_DIR}/${SUBDIR_NAME}"
+echo "Creating main directory: ${MAIN_DIR}"
+
+if [ -d "${MAIN_DIR}" ]; then
+    echo "Warning: Main directory already exists: ${MAIN_DIR}"
+    read -p "Do you want to overwrite it? (y/N): " -n 1 -r
+    echo
+    if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+        echo "Exiting without making changes."
+        exit 0
+    fi
+    echo "Removing existing directory..."
+    rm -rf "${MAIN_DIR}"
+fi
+
+mkdir -p "${MAIN_DIR}"
+
+# Find all subdirectories in the source directory
+echo "Searching for subdirectories in: ${SOURCE_DIR}"
+SUBDIRS=($(find "${SOURCE_DIR}" -maxdepth 1 -type d ! -path "${SOURCE_DIR}"))
+
+if [ ${#SUBDIRS[@]} -eq 0 ]; then
+    echo "Error: No subdirectories found in ${SOURCE_DIR}"
+    exit 1
+fi
+
+echo "Found ${#SUBDIRS[@]} subdirectory(ies):"
+for subdir in "${SUBDIRS[@]}"; do
+    echo "  $(basename "${subdir}")"
+done
+
+# Process each subdirectory
+for SUBDIR_PATH in "${SUBDIRS[@]}"; do
+    # Extract the basename of the subdirectory
+    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
+    
+    # Find STL files in this subdirectory (only *416*.stl)
+    echo ""
+    echo "=== Processing subdirectory: ${SUBDIR_BASENAME} ==="
+    echo "Searching for *416*.stl in: ${SUBDIR_PATH}"
+    STL_FILES=($(find "${SUBDIR_PATH}" -name "*416*.stl" -type f))
+    
+    if [ ${#STL_FILES[@]} -eq 0 ]; then
+        echo "Warning: *416*.stl not found in ${SUBDIR_PATH}, skipping..."
+        continue
+    fi
+    
+    echo "Found *416*.stl in ${SUBDIR_BASENAME}:"
+    for stl_file in "${STL_FILES[@]}"; do
+        echo "  $(basename "${stl_file}")"
+    done
+    
+    # Process each STL file in this subdirectory
+    for STL_PATH in "${STL_FILES[@]}"; do
+        # Extract the base name of the STL file (without .stl extension)
+        STL_BASENAME=$(basename "${STL_PATH}" .stl)
+        
+        # Create simulation directory name using subdirectory basename + STL basename (as subdirectory of MAIN_DIR)
+        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
+        
+        echo ""
+        echo "--- Processing STL: ${STL_BASENAME} from ${SUBDIR_BASENAME} ---"
+        echo "Creating simulation directory: ${SIM_DIR}"
+        
+        # Check if simulation directory already exists
+        if [ -d "${SIM_DIR}" ]; then
+            echo "Warning: Simulation directory already exists: ${SIM_DIR}"
+            read -p "Do you want to overwrite it? (y/N): " -n 1 -r
+            echo
+            if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+                echo "Skipping ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+                continue
+            fi
+            echo "Removing existing directory..."
+            rm -rf "${SIM_DIR}"
+        fi
+        
+        # Copy template to simulation directory
+        echo "Copying template from: ${TEMPLATE_DIR}"
+        cp -r "${TEMPLATE_DIR}" "${SIM_DIR}"
+        
+        # Create triSurface directory if it doesn't exist
+        TRISURFACE_DIR="${SIM_DIR}/constant/triSurface"
+        # mkdir -p "${TRISURFACE_DIR}"
+        
+        # Copy and rename STL file
+        CAR_STL_PATH="${TRISURFACE_DIR}/car.stl"
+        echo "Copying STL file: ${STL_PATH} -> ${CAR_STL_PATH}"
+        cp "${STL_PATH}" "${CAR_STL_PATH}"
+        
+        # Verify the STL file was copied successfully
+        if [ ! -f "${CAR_STL_PATH}" ]; then
+            echo "Error: Failed to copy STL file to ${CAR_STL_PATH}"
+            continue
+        fi
+        
+        # Call setup_simulation function from sim.py
+        echo "Calling setup_simulation for: ${SIM_DIR}"
+        cd "${SCRIPT_DIR}"
+        
+        # Use Python to call the setup_simulation function
+        python3 -c "
+import sys
+sys.path.append('${SCRIPT_DIR}')
+from sim import setup_simulation
+import os
+
+simdir = '${SIM_DIR}'
+print(f'Setting up simulation for: {simdir}')
+
+try:
+    setup_simulation(simdir)
+    print(f'Successfully set up simulation for: {os.path.basename(simdir)}')
+except Exception as e:
+    print(f'Error setting up simulation for {os.path.basename(simdir)}: {e}')
+    sys.exit(1)
+"
+        
+        if [ $? -eq 0 ]; then
+            echo "✓ Successfully set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+        else
+            echo "✗ Failed to set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+            continue
+        fi
+        
+        # Print summary information
+        echo "Simulation directory created: ${SIM_DIR}"
+        echo "STL file location: ${CAR_STL_PATH}"
+        
+        # Check if config file was updated
+        CONFIG_FILE="${SIM_DIR}/include/config"
+        if [ -f "${CONFIG_FILE}" ]; then
+            echo "Configuration file updated: ${CONFIG_FILE}"
+            
+            # Extract and display some key parameters
+            echo "Key parameters:"
+            grep -E "Aref|vr[1-4]_" "${CONFIG_FILE}" 2>/dev/null || echo "  (Could not extract parameters)"
+        fi
+        
+    done
+done
+
+echo ""
+echo "=== Setup Complete ==="
+echo "Created simulation directories for *416*.stl files in subdirectories of: ${SOURCE_DIR}"
+echo "You can now run OpenFOAM simulations in the created directories."
+
+# Optional: List all created simulation directories
+echo ""
+echo "Created simulation directories:"
+for SUBDIR_PATH in "${SUBDIRS[@]}"; do
+    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
+    STL_FILES_IN_SUBDIR=($(find "${SUBDIR_PATH}" -name "*416*.stl" -type f))
+    for STL_PATH in "${STL_FILES_IN_SUBDIR[@]}"; do
+        STL_BASENAME=$(basename "${STL_PATH}" .stl)
+        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
+        if [ -d "${SIM_DIR}" ]; then
+            echo "  ${SIM_DIR}"
+        fi
+    done
+done
+
+echo ""
+echo "Next steps:"
+echo "1. Navigate to a simulation directory"
+echo "2. Check the mesh quality: checkMesh"
+echo "3. Run the simulation: ./Allrun"
+echo "4. Monitor progress: tail -f log.simpleFoam"

cfd_workflow_20261012/setup_simulation_single_2.sh

@@ -0,0 +1,216 @@
+#!/bin/bash
+
+# OpenFOAM Simulation Setup Script
+# Usage: ./setup_simulation.sh <xxx>
+# Where xxx is the subdirectory name under the outputs path
+# ./setup_simulation.sh gen_meshes_1002
+# ./setup_simulation_single_2.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all
+# ./setup_simulation_single_2.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_rebuttal_R1_ori
+# ./setup_simulation_single_2.sh test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_rebuttal_R1_ori
+
+
+set -e  # Exit on any error
+
+# Check if argument is provided
+if [ $# -ne 1 ]; then
+    echo "Usage: $0 <subdirectory_name>"
+    echo "Example: $0 gen_meshes_1002"
+    exit 1
+fi
+
+# Input parameter
+SUBDIR_NAME="$1"
+
+# Define paths
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+TEMPLATE_DIR="/mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/template"
+OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Conditional/train_conditional_CLIPasso"
+OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Unconditional"
+SOURCE_DIR="${OUTPUT_BASE}/${SUBDIR_NAME}"
+
+echo "=== OpenFOAM Simulation Setup ==="
+echo "Subdirectory: ${SUBDIR_NAME}"
+echo "Source directory: ${SOURCE_DIR}"
+
+# Check if source directory exists
+if [ ! -d "${SOURCE_DIR}" ]; then
+    echo "Error: Source directory does not exist: ${SOURCE_DIR}"
+    exit 1
+fi
+
+# Check if template directory exists
+if [ ! -d "${TEMPLATE_DIR}" ]; then
+    echo "Error: Template directory does not exist: ${TEMPLATE_DIR}"
+    echo "Please update TEMPLATE_DIR in the script to point to the correct template location."
+    exit 1
+fi
+
+# Create main SUBDIR_NAME directory
+MAIN_DIR="${SCRIPT_DIR}/${SUBDIR_NAME}"
+echo "Creating main directory: ${MAIN_DIR}"
+
+if [ -d "${MAIN_DIR}" ]; then
+    echo "Warning: Main directory already exists: ${MAIN_DIR}"
+    read -p "Do you want to overwrite it? (y/N): " -n 1 -r
+    echo
+    if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+        echo "Exiting without making changes."
+        exit 0
+    fi
+    echo "Removing existing directory..."
+    rm -rf "${MAIN_DIR}"
+fi
+
+mkdir -p "${MAIN_DIR}"
+
+# Find all subdirectories in the source directory
+echo "Searching for subdirectories in: ${SOURCE_DIR}"
+SUBDIRS=($(find "${SOURCE_DIR}" -maxdepth 1 -type d ! -path "${SOURCE_DIR}"))
+
+if [ ${#SUBDIRS[@]} -eq 0 ]; then
+    echo "Error: No subdirectories found in ${SOURCE_DIR}"
+    exit 1
+fi
+
+echo "Found ${#SUBDIRS[@]} subdirectory(ies):"
+for subdir in "${SUBDIRS[@]}"; do
+    echo "  $(basename "${subdir}")"
+done
+
+# Process each subdirectory
+for SUBDIR_PATH in "${SUBDIRS[@]}"; do
+    # Extract the basename of the subdirectory
+    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
+    
+    # Find STL files in this subdirectory (only *original_*.stl)
+    echo ""
+    echo "=== Processing subdirectory: ${SUBDIR_BASENAME} ==="
+    echo "Searching for *original_*.stl in: ${SUBDIR_PATH}"
+    STL_FILES=($(find "${SUBDIR_PATH}" -name "*original_*.stl" -type f))
+    
+    if [ ${#STL_FILES[@]} -eq 0 ]; then
+        echo "Warning: *original_*.stl not found in ${SUBDIR_PATH}, skipping..."
+        continue
+    fi
+    
+    echo "Found *original_*.stl in ${SUBDIR_BASENAME}:"
+    for stl_file in "${STL_FILES[@]}"; do
+        echo "  $(basename "${stl_file}")"
+    done
+    
+    # Process each STL file in this subdirectory
+    for STL_PATH in "${STL_FILES[@]}"; do
+        # Extract the base name of the STL file (without .stl extension)
+        STL_BASENAME=$(basename "${STL_PATH}" .stl)
+        
+        # Create simulation directory name using subdirectory basename + STL basename (as subdirectory of MAIN_DIR)
+        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
+        
+        echo ""
+        echo "--- Processing STL: ${STL_BASENAME} from ${SUBDIR_BASENAME} ---"
+        echo "Creating simulation directory: ${SIM_DIR}"
+        
+        # Check if simulation directory already exists
+        if [ -d "${SIM_DIR}" ]; then
+            echo "Warning: Simulation directory already exists: ${SIM_DIR}"
+            read -p "Do you want to overwrite it? (y/N): " -n 1 -r
+            echo
+            if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+                echo "Skipping ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+                continue
+            fi
+            echo "Removing existing directory..."
+            rm -rf "${SIM_DIR}"
+        fi
+        
+        # Copy template to simulation directory
+        echo "Copying template from: ${TEMPLATE_DIR}"
+        cp -r "${TEMPLATE_DIR}" "${SIM_DIR}"
+        
+        # Create triSurface directory if it doesn't exist
+        TRISURFACE_DIR="${SIM_DIR}/constant/triSurface"
+        # mkdir -p "${TRISURFACE_DIR}"
+        
+        # Copy and rename STL file
+        CAR_STL_PATH="${TRISURFACE_DIR}/car.stl"
+        echo "Copying STL file: ${STL_PATH} -> ${CAR_STL_PATH}"
+        cp "${STL_PATH}" "${CAR_STL_PATH}"
+        
+        # Verify the STL file was copied successfully
+        if [ ! -f "${CAR_STL_PATH}" ]; then
+            echo "Error: Failed to copy STL file to ${CAR_STL_PATH}"
+            continue
+        fi
+        
+        # Call setup_simulation function from sim.py
+        echo "Calling setup_simulation for: ${SIM_DIR}"
+        cd "${SCRIPT_DIR}"
+        
+        # Use Python to call the setup_simulation function
+        python3 -c "
+import sys
+sys.path.append('${SCRIPT_DIR}')
+from sim import setup_simulation
+import os
+
+simdir = '${SIM_DIR}'
+print(f'Setting up simulation for: {simdir}')
+
+try:
+    setup_simulation(simdir)
+    print(f'Successfully set up simulation for: {os.path.basename(simdir)}')
+except Exception as e:
+    print(f'Error setting up simulation for {os.path.basename(simdir)}: {e}')
+    sys.exit(1)
+"
+        
+        if [ $? -eq 0 ]; then
+            echo "✓ Successfully set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+        else
+            echo "✗ Failed to set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+            continue
+        fi
+        
+        # Print summary information
+        echo "Simulation directory created: ${SIM_DIR}"
+        echo "STL file location: ${CAR_STL_PATH}"
+        
+        # Check if config file was updated
+        CONFIG_FILE="${SIM_DIR}/include/config"
+        if [ -f "${CONFIG_FILE}" ]; then
+            echo "Configuration file updated: ${CONFIG_FILE}"
+            
+            # Extract and display some key parameters
+            echo "Key parameters:"
+            grep -E "Aref|vr[1-4]_" "${CONFIG_FILE}" 2>/dev/null || echo "  (Could not extract parameters)"
+        fi
+        
+    done
+done
+
+echo ""
+echo "=== Setup Complete ==="
+echo "Created simulation directories for *original_*.stl files in subdirectories of: ${SOURCE_DIR}"
+echo "You can now run OpenFOAM simulations in the created directories."
+
+# Optional: List all created simulation directories
+echo ""
+echo "Created simulation directories:"
+for SUBDIR_PATH in "${SUBDIRS[@]}"; do
+    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
+    STL_FILES_IN_SUBDIR=($(find "${SUBDIR_PATH}" -name "*original_*.stl" -type f))
+    for STL_PATH in "${STL_FILES_IN_SUBDIR[@]}"; do
+        STL_BASENAME=$(basename "${STL_PATH}" .stl)
+        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
+        if [ -d "${SIM_DIR}" ]; then
+            echo "  ${SIM_DIR}"
+        fi
+    done
+done
+
+echo ""
+echo "Next steps:"
+echo "1. Navigate to a simulation directory"
+echo "2. Check the mesh quality: checkMesh"
+echo "3. Run the simulation: ./Allrun"
+echo "4. Monitor progress: tail -f log.simpleFoam"

cfd_workflow_20261012/setup_simulation_triopt.sh

@@ -0,0 +1,225 @@
+#!/bin/bash
+
+# OpenFOAM Simulation Setup Script
+# Usage: ./setup_simulation.sh <xxx>
+# Where xxx is the subdirectory name under the outputs path
+# ./setup_simulation.sh gen_meshes_1002
+# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all
+# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all
+# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_512
+
+# ./setup_simulation_rebuttal.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_rebuttal
+
+# ./setup_simulation_rebuttal.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_rebuttal_2
+
+# ./setup_simulation_rebuttal.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_rebuttal_R1
+
+
+# ./setup_simulation_triopt.sh output
+
+set -e  # Exit on any error
+
+# Check if argument is provided
+if [ $# -ne 1 ]; then
+    echo "Usage: $0 <subdirectory_name>"
+    echo "Example: $0 gen_meshes_1002"
+    exit 1
+fi
+
+# Input parameter
+SUBDIR_NAME="$1"
+
+# Define paths
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+TEMPLATE_DIR="/mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/template"
+# OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Conditional/train_conditional_CLIPasso"
+OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/TripOpt/test-test_900_1e-5"
+
+SOURCE_DIR="${OUTPUT_BASE}/${SUBDIR_NAME}"
+
+echo "=== OpenFOAM Simulation Setup ==="
+echo "Subdirectory: ${SUBDIR_NAME}"
+echo "Source directory: ${SOURCE_DIR}"
+
+# Check if source directory exists
+if [ ! -d "${SOURCE_DIR}" ]; then
+    echo "Error: Source directory does not exist: ${SOURCE_DIR}"
+    exit 1
+fi
+
+# Check if template directory exists
+if [ ! -d "${TEMPLATE_DIR}" ]; then
+    echo "Error: Template directory does not exist: ${TEMPLATE_DIR}"
+    echo "Please update TEMPLATE_DIR in the script to point to the correct template location."
+    exit 1
+fi
+
+# Create main SUBDIR_NAME directory
+MAIN_DIR="${SCRIPT_DIR}/${SUBDIR_NAME}"
+echo "Creating main directory: ${MAIN_DIR}"
+
+if [ -d "${MAIN_DIR}" ]; then
+    echo "Warning: Main directory already exists: ${MAIN_DIR}"
+    read -p "Do you want to overwrite it? (y/N): " -n 1 -r
+    echo
+    if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+        echo "Exiting without making changes."
+        exit 0
+    fi
+    echo "Removing existing directory..."
+    rm -rf "${MAIN_DIR}"
+fi
+
+mkdir -p "${MAIN_DIR}"
+
+# Find all subdirectories in the source directory
+echo "Searching for subdirectories in: ${SOURCE_DIR}"
+SUBDIRS=($(find "${SOURCE_DIR}" -maxdepth 1 -type d ! -path "${SOURCE_DIR}"))
+
+if [ ${#SUBDIRS[@]} -eq 0 ]; then
+    echo "Error: No subdirectories found in ${SOURCE_DIR}"
+    exit 1
+fi
+
+echo "Found ${#SUBDIRS[@]} subdirectory(ies):"
+for subdir in "${SUBDIRS[@]}"; do
+    echo "  $(basename "${subdir}")"
+done
+
+# Process each subdirectory
+for SUBDIR_PATH in "${SUBDIRS[@]}"; do
+    # Extract the basename of the subdirectory
+    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
+    
+    # Find all STL files in this subdirectory
+    echo ""
+    echo "=== Processing subdirectory: ${SUBDIR_BASENAME} ==="
+    echo "Searching for *_optimized_denorm.stl files in: ${SUBDIR_PATH}"
+    STL_FILES=($(find "${SUBDIR_PATH}" -name "*_optimized_denorm.stl" -type f))
+    
+    if [ ${#STL_FILES[@]} -eq 0 ]; then
+        echo "Warning: No STL files found in ${SUBDIR_PATH}, skipping..."
+        continue
+    fi
+    
+    echo "Found ${#STL_FILES[@]} STL file(s) in ${SUBDIR_BASENAME}:"
+    for stl_file in "${STL_FILES[@]}"; do
+        echo "  $(basename "${stl_file}")"
+    done
+    
+    # Process each STL file in this subdirectory
+    for STL_PATH in "${STL_FILES[@]}"; do
+        # Extract the base name of the STL file (without .stl extension)
+        STL_BASENAME=$(basename "${STL_PATH}" .stl)
+        
+        # Create simulation directory name using subdirectory basename + STL basename (as subdirectory of MAIN_DIR)
+        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
+        
+        echo ""
+        echo "--- Processing STL: ${STL_BASENAME} from ${SUBDIR_BASENAME} ---"
+        echo "Creating simulation directory: ${SIM_DIR}"
+        
+        # Check if simulation directory already exists
+        if [ -d "${SIM_DIR}" ]; then
+            echo "Warning: Simulation directory already exists: ${SIM_DIR}"
+            read -p "Do you want to overwrite it? (y/N): " -n 1 -r
+            echo
+            if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+                echo "Skipping ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+                continue
+            fi
+            echo "Removing existing directory..."
+            rm -rf "${SIM_DIR}"
+        fi
+        
+        # Copy template to simulation directory
+        echo "Copying template from: ${TEMPLATE_DIR}"
+        cp -r "${TEMPLATE_DIR}" "${SIM_DIR}"
+        
+        # Create triSurface directory if it doesn't exist
+        TRISURFACE_DIR="${SIM_DIR}/constant/triSurface"
+        # mkdir -p "${TRISURFACE_DIR}"
+        
+        # Copy and rename STL file
+        CAR_STL_PATH="${TRISURFACE_DIR}/car.stl"
+        echo "Copying STL file: ${STL_PATH} -> ${CAR_STL_PATH}"
+        cp "${STL_PATH}" "${CAR_STL_PATH}"
+        
+        # Verify the STL file was copied successfully
+        if [ ! -f "${CAR_STL_PATH}" ]; then
+            echo "Error: Failed to copy STL file to ${CAR_STL_PATH}"
+            continue
+        fi
+        
+        # Call setup_simulation function from sim.py
+        echo "Calling setup_simulation for: ${SIM_DIR}"
+        cd "${SCRIPT_DIR}"
+        
+        # Use Python to call the setup_simulation function
+        python3 -c "
+import sys
+sys.path.append('${SCRIPT_DIR}')
+from sim import setup_simulation
+import os
+
+simdir = '${SIM_DIR}'
+print(f'Setting up simulation for: {simdir}')
+
+try:
+    setup_simulation(simdir)
+    print(f'Successfully set up simulation for: {os.path.basename(simdir)}')
+except Exception as e:
+    print(f'Error setting up simulation for {os.path.basename(simdir)}: {e}')
+    sys.exit(1)
+"
+        
+        if [ $? -eq 0 ]; then
+            echo "✓ Successfully set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+        else
+            echo "✗ Failed to set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
+            continue
+        fi
+        
+        # Print summary information
+        echo "Simulation directory created: ${SIM_DIR}"
+        echo "STL file location: ${CAR_STL_PATH}"
+        
+        # Check if config file was updated
+        CONFIG_FILE="${SIM_DIR}/include/config"
+        if [ -f "${CONFIG_FILE}" ]; then
+            echo "Configuration file updated: ${CONFIG_FILE}"
+            
+            # Extract and display some key parameters
+            echo "Key parameters:"
+            grep -E "Aref|vr[1-4]_" "${CONFIG_FILE}" 2>/dev/null || echo "  (Could not extract parameters)"
+        fi
+        
+    done
+done
+
+echo ""
+echo "=== Setup Complete ==="
+echo "Created simulation directories for all STL files in subdirectories of: ${SOURCE_DIR}"
+echo "You can now run OpenFOAM simulations in the created directories."
+
+# Optional: List all created simulation directories
+echo ""
+echo "Created simulation directories:"
+for SUBDIR_PATH in "${SUBDIRS[@]}"; do
+    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
+    STL_FILES_IN_SUBDIR=($(find "${SUBDIR_PATH}" -name "*_optimized_denorm.stl" -type f))
+    for STL_PATH in "${STL_FILES_IN_SUBDIR[@]}"; do
+        STL_BASENAME=$(basename "${STL_PATH}" .stl)
+        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
+        if [ -d "${SIM_DIR}" ]; then
+            echo "  ${SIM_DIR}"
+        fi
+    done
+done
+
+echo ""
+echo "Next steps:"
+echo "1. Navigate to a simulation directory"
+echo "2. Check the mesh quality: checkMesh"
+echo "3. Run the simulation: ./Allrun"
+echo "4. Monitor progress: tail -f log.simpleFoam"

cfd_workflow_20261012/sim.py

@@ -0,0 +1,236 @@
+"""
+Utilities for the OpenFOAM simulation.
+
+Also look into /openfoam and oclerc/improved_car_dataset/Preprocessing
+"""
+
+import os, os.path
+import shutil
+import re
+
+import trimesh
+import numpy as np
+
+RE_FLOAT = '-?[0-9]+\.?[0-9]*'  # signed float
+RE_VECTOR = f'\(\s*{RE_FLOAT}\s*{RE_FLOAT}\s*{RE_FLOAT}\s*\)'  # 3d vector of signed floats
+
+CONFIG_FILE = "include/config"
+CAR_STL_FILE = "constant/triSurface/car.stl"
+
+
+####################################################################################################
+# Simulation setup
+####################################################################################################
+
+def find_highest_point(mesh, epsilon=0.05):
+    """Find point close to max height and the further front."""
+    height = mesh.bounds[1, 2]
+    close_p = mesh.vertices[:,2] > height - epsilon
+    verts = mesh.vertices[close_p]
+    return verts[verts[:,0].argmin()]
+
+def get_vr4(mesh):
+    # From DRIVAER template
+    _vr4_min, _vr4_max = np.array([3.2, -1., -0.3]), np.array([6.2, 1.0, 1.0])
+    vr4_min, vr4_max = _vr4_min.copy(), _vr4_max.copy()
+    
+    # x: start on highest point, then end on offset to the car
+    vr4_min[0] = find_highest_point(mesh)[0]
+    x_offset = 2.395022  # from DRIVAER
+    vr4_max[0] = mesh.bounds[1,0] + x_offset
+    
+    # y: resize based on ratio to DRIVAER
+    ratio_y = mesh.extents[1] / 2.02998  # from DRIVAER
+    vr4_y = (_vr4_max[1] - _vr4_min[1]) * ratio_y
+    vr4_min[1], vr4_max[1] = -vr4_y / 2, vr4_y / 2
+    
+    # z: to car height
+    vr4_max[2] = mesh.bounds[1,2]
+    
+    return vr4_min, vr4_max
+
+def get_vr3(mesh, vr4):
+    # From DRIVAER template
+    _vr3_min, _vr3_max = np.array([2.5, -1.5, -0.3]), np.array([7.5, 1.5, 1.4])
+    vr3_min, vr3_max = _vr3_min.copy(), _vr3_max.copy()
+    
+    # x: start on highest point, then constant offset to vr4
+    vr3_min[0] = find_highest_point(mesh)[0]
+    x_offset = 1.3  # from DRIVAER
+    vr3_max[0] = vr4[1][0] + x_offset
+    
+    # y: constant offset to vr4
+    y_offset = 0.5
+    vr3_min[1] = vr4[0][1] - y_offset
+    vr3_max[1] = vr4[1][1] + y_offset
+    
+    # z: height of car + constant offset
+    z_offset = 0.300101  # from DRIVAER
+    vr3_max[2] = mesh.bounds[1,2] + z_offset
+    
+    return vr3_min, vr3_max
+
+def get_vr2(mesh, vr3):
+    # From DRIVAER template
+    _vr2_min, _vr2_max = np.array([-2.0, -2.0, -0.3]), np.array([9.0, 2.0, 1.7])
+    vr2_min, vr2_max = _vr2_min.copy(), _vr2_max.copy()
+    
+    # x: same offset to front and to vr3
+    front_x_offset = 1.192151  # between DRIVAER and vr2
+    back_x_offset = 1.5  # between vr3 and 2
+    vr2_min[0] = mesh.bounds[0,0] - front_x_offset
+    vr2_max[0] = vr3[1][0] + back_x_offset
+    
+    # y: constant offset to vr3
+    y_offset = 0.5
+    vr2_min[1] = vr3[0][1] - y_offset
+    vr2_max[1] = vr3[1][1] + y_offset
+    
+    # z: constant offset to vr3
+    z_offset = 0.3
+    vr2_max[2] = vr3[1][2] + z_offset
+    
+    return vr2_min, vr2_max
+
+def get_vr1(mesh):
+    # From DRIVAER template
+    _vr1_min, _vr1_max = np.array([-7.5, -3.0, -0.3]), np.array([25.0, 3.0, 3.7])
+    vr1_min, vr1_max = _vr1_min.copy(), _vr1_max.copy()
+    
+    # Fixed
+    return vr1_min, vr1_max
+
+def get_all_vr(mesh):
+    vr4_min, vr4_max = get_vr4(mesh)
+    vr3_min, vr3_max = get_vr3(mesh, (vr4_min, vr4_max))
+    vr2_min, vr2_max = get_vr2(mesh, (vr3_min, vr3_max))
+    vr1_min, vr1_max = get_vr1(mesh)
+    return (vr4_min, vr4_max), (vr3_min, vr3_max), (vr2_min, vr2_max), (vr1_min, vr1_max)
+
+
+def find_Aref(mesh, ray_per_dim=512):
+    """Approximate frontal area by intersecting rays."""
+    y_min, y_max = mesh.bounds[:,1]
+    z_min, z_max = mesh.bounds[:,2]
+    yz_area = (y_max - y_min) * (z_max - z_min)
+    YZ = np.stack(np.meshgrid(
+        np.linspace(y_min, y_max, ray_per_dim), 
+        np.linspace(z_min, z_max, ray_per_dim),
+    ), axis=-1).reshape(-1, 2)
+    YZ = np.concatenate([np.full_like(YZ[:,0:1], -2), YZ], axis=1)
+    
+    intersections = mesh.ray.intersects_any(YZ, [[1,0,0]]* len(YZ))
+    return yz_area * intersections.mean()
+
+
+def vector2str(vector):
+    return " ".join(["("] + [f"{x:.2f}" for x in vector]+ [")"])
+
+def edit_config(configpath, aref, vr1_min, vr1_max, vr2_min, vr2_max, vr3_min, vr3_max, vr4_min, vr4_max):
+    with open(configpath, 'r') as f:
+        content = f.read()
+
+    # Automatic edition of Aref
+    content = re.sub(f'Aref\s*{RE_FLOAT}\s*;', f'Aref {aref:.6f};', content)
+
+    # Automatic edition of vri's
+    content = re.sub(f'vr1_min\s*{RE_VECTOR}\s*;', f'vr1_min {vector2str(vr1_min)};', content)
+    content = re.sub(f'vr1_max\s*{RE_VECTOR}\s*;', f'vr1_max {vector2str(vr1_max)};', content)
+
+    content = re.sub(f'vr2_min\s*{RE_VECTOR}\s*;', f'vr2_min {vector2str(vr2_min)};', content)
+    content = re.sub(f'vr2_max\s*{RE_VECTOR}\s*;', f'vr2_max {vector2str(vr2_max)};', content)
+
+    content = re.sub(f'vr3_min\s*{RE_VECTOR}\s*;', f'vr3_min {vector2str(vr3_min)};', content)
+    content = re.sub(f'vr3_max\s*{RE_VECTOR}\s*;', f'vr3_max {vector2str(vr3_max)};', content)
+
+    content = re.sub(f'vr4_min\s*{RE_VECTOR}\s*;', f'vr4_min {vector2str(vr4_min)};', content)
+    content = re.sub(f'vr4_max\s*{RE_VECTOR}\s*;', f'vr4_max {vector2str(vr4_max)};', content)
+
+    with open(configpath, 'w') as f:
+        f.write(content)
+
+
+def copy_template(dst, src="/mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/template/"): 
+    shutil.copytree(src, dst)
+
+
+def setup_simulation(simdir, aref_ray=512):
+    """Correctly transform the car and compute the config parameters."""
+    # 1. Verify the existence of a mesh
+    if not os.path.isfile(os.path.join(simdir, CAR_STL_FILE)):
+        print(f"File does not exist! ({simdir}) Skipping...")
+        return
+    car = trimesh.load(os.path.join(simdir, CAR_STL_FILE))
+
+    # 2. Frontal area
+    aref_pred = find_Aref(car, ray_per_dim=aref_ray)
+
+    # 3. Refinement regions
+    (vr4_min, vr4_max), (vr3_min, vr3_max), (vr2_min, vr2_max), (vr1_min, vr1_max) = get_all_vr(car)
+
+    # Edit the config file
+    edit_config(os.path.join(simdir, "include/config"), 
+                aref_pred, 
+                vr1_min, vr1_max, vr2_min, vr2_max, 
+                vr3_min, vr3_max, vr4_min, vr4_max)
+    
+
+
+
+####################################################################################################
+# Utilities
+####################################################################################################
+
+def get_Cd_sim(simdir, itercheck=2500, average=1000, load_always=False):
+    """
+    Get the drag coefficient from the simulation directory.
+    
+    itercheck: int (optional)
+        If given, will verify if the max iteration is the given int.
+    average: int
+        If not None, will return the average Cd over the last `average` iters.
+    load_always: bool
+        If True, will load the data even if the simulation is not finished.
+    
+    If return value is negative, then an error has been raised:
+      -1: Unknown error.
+      -2: Experiment is not finished.
+      -3: Problem in loading the force coeff data.
+    """
+    try:
+        if not os.path.isdir(os.path.join(simdir, "postProcessing")):
+            print(f"{simdir} might not be finished (no 'postProcessing' folder).")
+            return -2
+
+        # Get data in tabular form
+        try:
+            data = []
+            with open(os.path.join(simdir, "postProcessing/car/0/forceCoeffs.dat")) as file:
+                for line in file:
+                    if line[0] == '#':
+                        # The last commented line should correspond to column names
+                        names = line[1:].split()
+                    else:
+                        data.append(line.split())
+            data = np.array(data).astype(float)
+            
+            if itercheck is not None and len(data)-1 != itercheck:
+                print(f"WARNING ({simdir}): iteration number is incorrect ({len(data)-1}!={itercheck})!")
+                if not load_always:
+                    return -2
+            
+        except ValueError as err:
+            print(f"Cannot load data from {simdir}: {err}")
+            return -3
+
+        # Extract the drag coeff (optionally average over the last iters)
+        col = names.index('Cd') if 'Cd' in names else 2
+        if average is not None:
+            cd = data[-average:, col].mean()
+        else:
+            cd = data[:, col]
+        return cd
+    
+    except Exception as err:
+        print(f"Unknown exception for {simdir}: {err}")
+        return -1

cfd_workflow_20261012/sim_run.sh

@@ -0,0 +1,286 @@
+MAINDIR="$1"
+cd $MAINDIR
+for expdir in $(ls $1); do
+    cd $expdir
+
+    mkdir -p logs
+    # Verify if already finished by checking the plotting folder
+    ITERMAX=$(grep -o "endTime *[0-9]* *;" system/controlDict | grep -o "[0-9]*")
+    if [[ -d images ]] && [[ -d $ITERMAX ]] && [[ -f simulation.done ]]
+    then
+        echo "Experiment at $expdir is already finished! Passing..."
+    else
+        bash run_all_shm.sh 2>&1 | tee -a logs/log.ALL
+    fi
+
+    cd $MAINDIR
+done
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim1 # 1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim2 # 2
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim3 # 3
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim4 # 4
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim5 # 5
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim6 # 6
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim7 # 7
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim8 # 8
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim9 # 9
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim10 # 10
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim11 # 11
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim12 # 12
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim13 # 13
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim14 # 14
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim15 # 15
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim16 # 16
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim17 # 17
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim18 # 18
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim19 # 19
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim20 # 20
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim21 # 21
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim22 # 22
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim23 # 23
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim24 # 24
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim25 # 25
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_sim26 # 26
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_27 # 1
+
+
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1002
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1002_2
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1006_sim1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1006_sim2
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1006_sim3
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1006_optoutput_splatent_sim1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1006_optoutput_splatent_sim2
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1006_optoutput_splatent_sim3
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1007_ground_sim1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1007_ground_sim2
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1007_ground_1002_sim1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1007_ground_1002_zeroliftlateral_sim1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1007_0.1_1002_sim1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1007_0.1_moveground_1002_sim1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1007_0.3_1002_sim1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1002_sim_E_S_WW_WM_615 13
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1002_sim_N_S_WW_WM_256 14
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1002_sim_N_S_WWS_WM_172 15 slow
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1007_0.1_1002_sim2 # 2
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1007_0.3_1002_sim2 # 3
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1007_ground_1002_sim2 # 4
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim1 # 1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim2 # 5
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008 # 7
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim3 # 8
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim4 # 9
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim5 # 10
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim6 # 11
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim7 # 12
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim8 # 6
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim9 # 
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim10 # 
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1008_sim11 # 
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground # 1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground_sim1 # 2
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground_sim2 # 3
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground_sim3 # 4
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground_sim4 # 5
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground_sim5 # 6
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground_sim6 # 7
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground_sim7 # 8
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground_sim8 # 9
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground_sim9 # 10
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_ground_sim10 # 11
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_318 # 12
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_318_sim1 # 13
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_318_sim2 # 14
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1010_318_sim3 # 15
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch # 14
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim1 # 1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim2 # 2
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim3 # 3
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim4 # 4
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim5 # 5
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim6 # 6
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim7 # 7
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim8 # 8
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim9 # 9
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim10 # 10
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim11 # 11
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim12 # 12
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1011_batch_sim13 # 13
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_base_sim1 # 6
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim1 # 8
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_base_sim2 # 9
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim2 # 10
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_base_sim3 # 11
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim3 # 12
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_base_sim4 # 13
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim4 # 14
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_base_sim5 # 1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim5 # 2
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_base_sim6 # 3
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim6 # 4
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_base_sim7 # 5
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim7 # 6
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim1 # 16
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim3 # 20
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim6 # 27
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim7 # 29
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim8 # 30
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim8 # 7
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim9 # 8
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim9 # 10
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim10 # 11
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim10 # 12
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim10 # 13
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim11 # 14
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim11 # 1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim11 # 2
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim1 # 17
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim2 # 18
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim2 # 19
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim3 # 21
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim4 # 22
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim4 # 23
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim5 # 24
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim5 # 25
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim6 # 26
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim7 # 28
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim9 # 9
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim8 # 15
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim12 # 3
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim12 # 4
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim12 # 5
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim13 # 6
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim13 # 27
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim13 # 28
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim14 # 29
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim14 # 30
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim14 # 1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim15 # 8
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim15 # 10
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim15 # 11
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim16 # 13
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim16 # 14
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim16 # 16
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim17 # 20
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim17 # 6
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim17 # 7
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim18 # 27
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim18 # 29
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim18 # 2
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim19 # 3
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim19 # 4
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim19 # 5
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim20 # 12
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim20 # 19
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim20 # 21
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim21 # 22
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim21 # 23
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_fine_batch_144_15_sim21 # 24
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim22 # 17
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim22 # 25
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim23 # 26
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim23 # 28
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim24 # 29
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim24 # 30
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim25 # 1
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim25 # 7
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim26 # 8 
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim26 # 9
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim27 # 10 
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim27 # 11
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim28 # 18
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim28 # 20
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim29 # 21
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim29 # 22
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim30 # 23
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim30 # 24
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_base_sim31 # 25
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/gen_meshes_1012_sep_batch_144_15_sim31 # 27
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_1
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_512
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_1
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_2
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_3
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_4
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_5
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_6
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_7
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_8
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_9
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_10
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_11
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_12    
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_13
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_14
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_15
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_16
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_17
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_18
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_19
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_20
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_ori_2
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_ori_1
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_rebuttal_R1_1
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_rebuttal_R1_ori
+
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all_rebuttal_R1_1
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/triopt_output_1800_1
+
+# bash sim_run.sh /mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/triopt_output_900_1