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expfactory/expfactory
expfactory/database/relational.py
https://github.com/expfactory/expfactory/blob/27ce6cc93e17231df8a8024f18e631336afd3501/expfactory/database/relational.py#L177-L213
def save_data(self,session, exp_id, content): '''save data will obtain the current subid from the session, and save it depending on the database type. Currently we just support flat files''' from expfactory.database.models import ( Participant, Result ) subid = session.get('subid'...
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save data will obtain the current subid from the session, and save it depending on the database type. Currently we just support flat files
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python
train
39.945946
bcbio/bcbio-nextgen
bcbio/heterogeneity/theta.py
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/heterogeneity/theta.py#L43-L76
def subset_by_supported(input_file, get_coords, calls_by_name, work_dir, data, headers=("#",)): """Limit CNVkit input to calls with support from another caller. get_coords is a function that return chrom, start, end from a line of the input_file, allowing handling of multiple input ...
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Limit CNVkit input to calls with support from another caller. get_coords is a function that return chrom, start, end from a line of the input_file, allowing handling of multiple input file types.
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python
train
57.735294
kivy/python-for-android
pythonforandroid/bootstraps/pygame/build/buildlib/jinja2.egg/jinja2/compiler.py
https://github.com/kivy/python-for-android/blob/8e0e8056bc22e4d5bd3398a6b0301f38ff167933/pythonforandroid/bootstraps/pygame/build/buildlib/jinja2.egg/jinja2/compiler.py#L125-L128
def add_special(self, name): """Register a special name like `loop`.""" self.undeclared.discard(name) self.declared.add(name)
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Register a special name like `loop`.
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python
train
36.5
kontron/python-aardvark
pyaardvark/aardvark.py
https://github.com/kontron/python-aardvark/blob/9827f669fbdc5bceb98e7d08a294b4e4e455d0d5/pyaardvark/aardvark.py#L280-L286
def enable_i2c(self): """Set this to `True` to enable the hardware I2C interface. If set to `False` the hardware interface will be disabled and its pins (SDA and SCL) can be used as GPIOs. """ config = self._interface_configuration(CONFIG_QUERY) return config == CONFIG_GP...
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Set this to `True` to enable the hardware I2C interface. If set to `False` the hardware interface will be disabled and its pins (SDA and SCL) can be used as GPIOs.
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python
train
49.714286
siemens/django-dingos
dingos/models.py
https://github.com/siemens/django-dingos/blob/7154f75b06d2538568e2f2455a76f3d0db0b7d70/dingos/models.py#L1822-L1836
def get_user_data_iobject(user=None,group=None,data_kind=DINGOS_USER_DATA_TYPE_NAME): """ Returns either stored settings of a given user or default settings. This behavior reflects the need for views to have some settings at hand when running. The settings are returned as dict object. ...
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Returns either stored settings of a given user or default settings. This behavior reflects the need for views to have some settings at hand when running. The settings are returned as dict object.
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python
train
41.466667
limix/limix-core
limix_core/util/cobj.py
https://github.com/limix/limix-core/blob/5c590b4d351409f83ca320844b4897ce92203814/limix_core/util/cobj.py#L42-L54
def cached_idxs(method): """ this function is used as a decorator for caching """ def method_wrapper(self,*args,**kwargs): tail = '_'.join(str(idx) for idx in args) _cache_attr_name = '_cache_'+method.__name__+'_'+tail _bool_attr_name = '_cached_'+method.__name__+'_'+tail is_cac...
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this function is used as a decorator for caching
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python
train
45.615385
cloud9ers/gurumate
environment/lib/python2.7/site-packages/IPython/utils/text.py
https://github.com/cloud9ers/gurumate/blob/075dc74d1ee62a8c6b7a8bf2b271364f01629d1e/environment/lib/python2.7/site-packages/IPython/utils/text.py#L363-L399
def indent(instr,nspaces=4, ntabs=0, flatten=False): """Indent a string a given number of spaces or tabstops. indent(str,nspaces=4,ntabs=0) -> indent str by ntabs+nspaces. Parameters ---------- instr : basestring The string to be indented. nspaces : int (default: 4) The number...
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Indent a string a given number of spaces or tabstops. indent(str,nspaces=4,ntabs=0) -> indent str by ntabs+nspaces. Parameters ---------- instr : basestring The string to be indented. nspaces : int (default: 4) The number of spaces to be indented. ntabs : int (default: 0) ...
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python
test
27.702703
bkg/greenwich
greenwich/tile.py
https://github.com/bkg/greenwich/blob/57ec644dadfe43ce0ecf2cfd32a2de71e0c8c141/greenwich/tile.py#L20-L40
def to_lonlat(xtile, ytile, zoom): """Returns a tuple of (longitude, latitude) from a map tile xyz coordinate. See http://wiki.openstreetmap.org/wiki/Slippy_map_tilenames#Lon..2Flat._to_tile_numbers_2 Arguments: xtile - x tile location as int or float ytile - y tile location as int or float zo...
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python
test
38.095238
gmr/queries
queries/session.py
https://github.com/gmr/queries/blob/a68855013dc6aaf9ed7b6909a4701f8da8796a0a/queries/session.py#L273-L307
def _connect(self): """Connect to PostgreSQL, either by reusing a connection from the pool if possible, or by creating the new connection. :rtype: psycopg2.extensions.connection :raises: pool.NoIdleConnectionsError """ # Attempt to get a cached connection from the conne...
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python
train
38.885714
Crunch-io/crunch-cube
src/cr/cube/measures/wishart_pairwise_significance.py
https://github.com/Crunch-io/crunch-cube/blob/a837840755690eb14b2ec8e8d93b4104e01c854f/src/cr/cube/measures/wishart_pairwise_significance.py#L86-L90
def _factory(slice_, axis, weighted): """return subclass for PairwiseSignificance, based on slice dimension types.""" if slice_.dim_types[0] == DT.MR_SUBVAR: return _MrXCatPairwiseSignificance(slice_, axis, weighted) return _CatXCatPairwiseSignificance(slice_, axis, weighted)
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return subclass for PairwiseSignificance, based on slice dimension types.
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python
train
61.6
PaulHancock/Aegean
AegeanTools/BANE.py
https://github.com/PaulHancock/Aegean/blob/185d2b4a51b48441a1df747efc9a5271c79399fd/AegeanTools/BANE.py#L467-L491
def write_fits(data, header, file_name): """ Combine data and a fits header to write a fits file. Parameters ---------- data : numpy.ndarray The data to be written. header : astropy.io.fits.hduheader The header for the fits file. file_name : string The file to writ...
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Combine data and a fits header to write a fits file. Parameters ---------- data : numpy.ndarray The data to be written. header : astropy.io.fits.hduheader The header for the fits file. file_name : string The file to write Returns ------- None
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python
train
21.4
ArduPilot/MAVProxy
MAVProxy/modules/mavproxy_heliplane.py
https://github.com/ArduPilot/MAVProxy/blob/f50bdeff33064876f7dc8dc4683d278ff47f75d5/MAVProxy/modules/mavproxy_heliplane.py#L102-L130
def update_channels(self): '''update which channels provide input''' self.interlock_channel = -1 self.override_channel = -1 self.zero_I_channel = -1 self.no_vtol_channel = -1 # output channels self.rsc_out_channel = 9 self.fwd_thr_channel = 10 fo...
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update which channels provide input
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python
train
33.206897
pvlib/pvlib-python
pvlib/solarposition.py
https://github.com/pvlib/pvlib-python/blob/2e844a595b820b43d1170269781fa66bd0ccc8a3/pvlib/solarposition.py#L1105-L1144
def declination_spencer71(dayofyear): """ Solar declination from Duffie & Beckman [1] and attributed to Spencer (1971) and Iqbal (1983). .. warning:: Return units are radians, not degrees. Parameters ---------- dayofyear : numeric Returns ------- declination (radians) ...
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python
train
30.65
pennlabs/penn-sdk-python
penn/calendar3year.py
https://github.com/pennlabs/penn-sdk-python/blob/31ff12c20d69438d63bc7a796f83ce4f4c828396/penn/calendar3year.py#L12-L48
def pull_3year(self): """Returns a list (in JSON format) containing all the events from the Penn iCal Calendar. List contains events in chronological order. Each element of the list is a dictionary, containing: - Name of the event 'name' - Start date 'start' ...
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Returns a list (in JSON format) containing all the events from the Penn iCal Calendar. List contains events in chronological order. Each element of the list is a dictionary, containing: - Name of the event 'name' - Start date 'start' - End date 'end'
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python
train
40.864865
apple/turicreate
deps/src/libxml2-2.9.1/python/libxml2.py
https://github.com/apple/turicreate/blob/74514c3f99e25b46f22c6e02977fe3da69221c2e/deps/src/libxml2-2.9.1/python/libxml2.py#L7187-L7199
def validateOneElement(self, doc, elem): """Try to validate a single element and it's attributes, basically it does the following checks as described by the XML-1.0 recommendation: - [ VC: Element Valid ] - [ VC: Required Attribute ] Then call xmlValidateOneAttribute() fo...
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python
train
48
JdeRobot/base
src/drivers/MAVLinkServer/MAVProxy/modules/mavproxy_DGPS.py
https://github.com/JdeRobot/base/blob/303b18992785b2fe802212f2d758a60873007f1f/src/drivers/MAVLinkServer/MAVProxy/modules/mavproxy_DGPS.py#L21-L41
def idle_task(self): '''called in idle time''' try: data = self.port.recv(200) except socket.error as e: if e.errno in [ errno.EAGAIN, errno.EWOULDBLOCK ]: return raise if len(data) > 110: print("DGPS data too large: %u byte...
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called in idle time
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python
train
29.428571
JohnVinyard/zounds
zounds/spectral/tfrepresentation.py
https://github.com/JohnVinyard/zounds/blob/337b3f98753d09eaab1c72dcd37bb852a3fa5ac6/zounds/spectral/tfrepresentation.py#L57-L69
def validate(self, size): """ Ensure that the size of the dimension matches the number of bands in the scale Raises: ValueError: when the dimension size and number of bands don't match """ msg = 'scale and array size must match, ' \ 'but were s...
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Ensure that the size of the dimension matches the number of bands in the scale Raises: ValueError: when the dimension size and number of bands don't match
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python
train
34.307692
Jajcus/pyxmpp2
pyxmpp2/transport.py
https://github.com/Jajcus/pyxmpp2/blob/14a40a3950910a9cd008b55f0d8905aa0186ce18/pyxmpp2/transport.py#L656-L665
def _initiate_starttls(self, **kwargs): """Initiate starttls handshake over the socket. """ if self._tls_state == "connected": raise RuntimeError("Already TLS-connected") kwargs["do_handshake_on_connect"] = False logger.debug("Wrapping the socket into ssl") se...
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Initiate starttls handshake over the socket.
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python
valid
44.3
apache/incubator-mxnet
plugin/opencv/opencv.py
https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/plugin/opencv/opencv.py#L173-L188
def next(self): """Move iterator position forward""" batch = mx.nd.zeros((self.batch_size, self.size[1], self.size[0], 3)) i = self.cur for i in range(self.cur, min(len(self.list), self.cur+self.batch_size)): str_img = open(self.root+self.list[i]+'.jpg').read() im...
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Move iterator position forward
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python
train
44
ubc/github2gitlab
github2gitlab/main.py
https://github.com/ubc/github2gitlab/blob/795898f6d438621fa0c996a7156d70c382ff0493/github2gitlab/main.py#L254-L281
def add_key(self): "Add ssh key to gitlab if necessary" try: with open(self.args.ssh_public_key) as f: public_key = f.read().strip() except: log.debug("No key found in {}".format(self.args.ssh_public_key)) return None g = self.gitlab ...
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Add ssh key to gitlab if necessary
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python
train
43.428571
pytorch/vision
torchvision/transforms/functional.py
https://github.com/pytorch/vision/blob/3afcf3cd49661c466c75ea536b0b2a7ff57f9a05/torchvision/transforms/functional.py#L410-L432
def _get_perspective_coeffs(startpoints, endpoints): """Helper function to get the coefficients (a, b, c, d, e, f, g, h) for the perspective transforms. In Perspective Transform each pixel (x, y) in the orignal image gets transformed as, (x, y) -> ( (ax + by + c) / (gx + hy + 1), (dx + ey + f) / (gx + hy ...
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Helper function to get the coefficients (a, b, c, d, e, f, g, h) for the perspective transforms. In Perspective Transform each pixel (x, y) in the orignal image gets transformed as, (x, y) -> ( (ax + by + c) / (gx + hy + 1), (dx + ey + f) / (gx + hy + 1) ) Args: List containing [top-left, top-rig...
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python
test
44.434783
apache/incubator-mxnet
example/gluon/lipnet/utils/preprocess_data.py
https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/gluon/lipnet/utils/preprocess_data.py#L118-L124
def process_frames_mouth(self, frames): """ Preprocess from frames using mouth detector """ self.face = np.array(frames) self.mouth = np.array(frames) self.set_data(frames)
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Preprocess from frames using mouth detector
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python
train
30.571429
heroku/heroku.py
heroku/helpers.py
https://github.com/heroku/heroku.py/blob/cadc0a074896cf29c65a457c5c5bdb2069470af0/heroku/helpers.py#L99-L131
def to_api(in_dict, int_keys=None, date_keys=None, bool_keys=None): """Extends a given object for API Production.""" # Cast all int_keys to int() if int_keys: for in_key in int_keys: if (in_key in in_dict) and (in_dict.get(in_key, None) is not None): in_dict[in_key] = in...
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Extends a given object for API Production.
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python
train
30.424242
aws/aws-xray-sdk-python
aws_xray_sdk/core/sampling/sampler.py
https://github.com/aws/aws-xray-sdk-python/blob/707358cd3a516d51f2ebf71cf34f00e8d906a667/aws_xray_sdk/core/sampling/sampler.py#L83-L96
def load_settings(self, daemon_config, context, origin=None): """ The pollers have dependency on the context manager of the X-Ray recorder. They will respect the customer specified xray client to poll sampling rules/targets. Otherwise they falls back to use the same X-Ray daemon ...
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The pollers have dependency on the context manager of the X-Ray recorder. They will respect the customer specified xray client to poll sampling rules/targets. Otherwise they falls back to use the same X-Ray daemon as the emitter.
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python
train
44.285714
odlgroup/odl
odl/phantom/transmission.py
https://github.com/odlgroup/odl/blob/b8443f6aca90e191ba36c91d32253c5a36249a6c/odl/phantom/transmission.py#L79-L111
def shepp_logan_ellipsoids(ndim, modified=False): """Ellipsoids for the standard Shepp-Logan phantom in 2 or 3 dimensions. Parameters ---------- ndim : {2, 3} Dimension of the space the ellipsoids should be in. modified : bool, optional True if the modified Shepp-Logan phantom shoul...
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Ellipsoids for the standard Shepp-Logan phantom in 2 or 3 dimensions. Parameters ---------- ndim : {2, 3} Dimension of the space the ellipsoids should be in. modified : bool, optional True if the modified Shepp-Logan phantom should be given. The modified phantom has greatly ampl...
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python
train
30.515152
google/transitfeed
transitfeed/serviceperiod.py
https://github.com/google/transitfeed/blob/eb2991a3747ba541b2cb66502b305b6304a1f85f/transitfeed/serviceperiod.py#L106-L110
def GetCalendarFieldValuesTuple(self): """Return the tuple of calendar.txt values or None if this ServicePeriod should not be in calendar.txt .""" if self.start_date and self.end_date: return [getattr(self, fn) for fn in self._FIELD_NAMES]
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Return the tuple of calendar.txt values or None if this ServicePeriod should not be in calendar.txt .
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python
train
50.6
APSL/puput
setup.py
https://github.com/APSL/puput/blob/c3294f6bb0dd784f881ce9e3089cbf40d0528e47/setup.py#L11-L16
def get_version(package): """ Return package version as listed in `__version__` in `init.py`. """ init_py = codecs.open(os.path.join(package, '__init__.py'), encoding='utf-8').read() return re.search("^__version__ = ['\"]([^'\"]+)['\"]", init_py, re.MULTILINE).group(1)
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Return package version as listed in `__version__` in `init.py`.
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python
train
47.333333
cmbruns/pyopenvr
src/openvr/__init__.py
https://github.com/cmbruns/pyopenvr/blob/68395d26bb3df6ab1f0f059c38d441f962938be6/src/openvr/__init__.py#L5064-L5074
def setOverlayTexture(self, ulOverlayHandle): """ Texture to draw for the overlay. This function can only be called by the overlay's creator or renderer process (see SetOverlayRenderingPid) . * OpenGL dirty state: glBindTexture """ fn = self.function_table.setOverlayText...
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Texture to draw for the overlay. This function can only be called by the overlay's creator or renderer process (see SetOverlayRenderingPid) . * OpenGL dirty state: glBindTexture
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python
train
39.090909
BlockHub/blockhubdpostools
dpostools/api.py
https://github.com/BlockHub/blockhubdpostools/blob/27712cd97cd3658ee54a4330ff3135b51a01d7d1/dpostools/api.py#L76-L101
def status(self): """ check the status of the network and the peers :return: network_height, peer_status """ peer = random.choice(self.PEERS) formatted_peer = 'http://{}:4001'.format(peer) peerdata = requests.get(url=formatted_peer + '/api/peers/').json()['peers'...
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check the status of the network and the peers :return: network_height, peer_status
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python
valid
31.846154
DataDog/integrations-core
tokumx/datadog_checks/tokumx/vendor/pymongo/monitoring.py
https://github.com/DataDog/integrations-core/blob/ebd41c873cf9f97a8c51bf9459bc6a7536af8acd/tokumx/datadog_checks/tokumx/vendor/pymongo/monitoring.py#L711-L716
def event_listeners(self): """List of registered event listeners.""" return (self.__command_listeners[:], self.__server_heartbeat_listeners[:], self.__server_listeners[:], self.__topology_listeners[:])
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List of registered event listeners.
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python
train
43.333333
deepmind/sonnet
sonnet/python/modules/nets/convnet.py
https://github.com/deepmind/sonnet/blob/00612ca3178964d86b556e062694d808ff81fcca/sonnet/python/modules/nets/convnet.py#L588-L712
def transpose(self, name=None, output_channels=None, kernel_shapes=None, strides=None, paddings=None, activation=None, activate_final=None, normalization_ctor=None, normalizati...
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Returns transposed version of this network. Args: name: Optional string specifying the name of the transposed module. The default name is constructed by appending "_transpose" to `self.module_name`. output_channels: Optional iterable of numbers of output channels. kernel_shapes: O...
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python
train
46.488
drdoctr/doctr
doctr/local.py
https://github.com/drdoctr/doctr/blob/0f19ff78c8239efcc98d417f36b0a31d9be01ba5/doctr/local.py#L314-L335
def generate_ssh_key(): """ Generates an SSH deploy public and private key. Returns (private key, public key), a tuple of byte strings. """ key = rsa.generate_private_key( backend=default_backend(), public_exponent=65537, key_size=4096 ) private_key = key.privat...
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Generates an SSH deploy public and private key. Returns (private key, public key), a tuple of byte strings.
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python
train
27.136364
saltstack/salt
salt/modules/boto_apigateway.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/boto_apigateway.py#L856-L879
def create_api_stage(restApiId, stageName, deploymentId, description='', cacheClusterEnabled=False, cacheClusterSize='0.5', variables=None, region=None, key=None, keyid=None, profile=None): ''' Creates a new API stage for a given restApiId and deploymentId. CLI Exa...
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Creates a new API stage for a given restApiId and deploymentId. CLI Example: .. code-block:: bash salt myminion boto_apigateway.create_api_stage restApiId stagename deploymentId \\ description='' cacheClusterEnabled=True|False cacheClusterSize='0.5' variables='{"name": "value"}'
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python
train
48.416667
bmcfee/muda
muda/base.py
https://github.com/bmcfee/muda/blob/ff82efdfaeb98da0a9f9124845826eb20536a9ba/muda/base.py#L227-L242
def transform(self, jam): '''Apply the sequence of transformations to a single jam object. Parameters ---------- jam : jams.JAMS The jam object to transform Yields ------ jam_out : jams.JAMS The jam objects produced by the transformation ...
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Apply the sequence of transformations to a single jam object. Parameters ---------- jam : jams.JAMS The jam object to transform Yields ------ jam_out : jams.JAMS The jam objects produced by the transformation sequence
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python
valid
26.125
raphaelvallat/pingouin
pingouin/power.py
https://github.com/raphaelvallat/pingouin/blob/58b19fa4fffbfe09d58b456e3926a148249e4d9b/pingouin/power.py#L523-L667
def power_corr(r=None, n=None, power=None, alpha=0.05, tail='two-sided'): """ Evaluate power, sample size, correlation coefficient or significance level of a correlation test. Parameters ---------- r : float Correlation coefficient. n : int Number of observations (sample siz...
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Evaluate power, sample size, correlation coefficient or significance level of a correlation test. Parameters ---------- r : float Correlation coefficient. n : int Number of observations (sample size). power : float Test power (= 1 - type II error). alpha : float ...
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python
train
32.296552
genialis/genesis-pyapi
genesis/genesis.py
https://github.com/genialis/genesis-pyapi/blob/dfe9bcc8b332a8b9873db4ab9994b0cc10eb209a/genesis/genesis.py#L108-L157
def data(self, **query): """Query for Data object annotation.""" objects = self.cache['objects'] data = self.api.data.get(**query)['objects'] data_objects = [] for d in data: _id = d['id'] if _id in objects: # Update existing object ...
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Query for Data object annotation.
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python
test
37.1
gccxml/pygccxml
pygccxml/parser/declarations_cache.py
https://github.com/gccxml/pygccxml/blob/2b1efbb9e37ceb2ae925c7f3ce1570f476db9e1e/pygccxml/parser/declarations_cache.py#L17-L34
def file_signature(filename): """ Return a signature for a file. """ if not os.path.isfile(filename): return None if not os.path.exists(filename): return None # Duplicate auto-generated files can be recognized with the sha1 hash. sig = hashlib.sha1() with open(filename...
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Return a signature for a file.
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python
train
21.722222
Nachtfeuer/pipeline
spline/components/tasks.py
https://github.com/Nachtfeuer/pipeline/blob/04ca18c4e95e4349532bb45b768206393e1f2c13/spline/components/tasks.py#L98-L127
def prepare_shell_data(self, shells, key, entry): """Prepare one shell or docker task.""" if self.can_process_shell(entry): if key in ['python']: entry['type'] = key if 'with' in entry and isinstance(entry['with'], str): rendered_with = ast.litera...
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Prepare one shell or docker task.
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python
train
47.333333
nephila/django-knocker
knocker/consumers.py
https://github.com/nephila/django-knocker/blob/d25380d43a1f91285f1581dcf9db8510fe87f354/knocker/consumers.py#L9-L18
def ws_connect(message): """ Channels connection setup. Register the current client on the related Group according to the language """ prefix, language = message['path'].strip('/').split('/') gr = Group('knocker-{0}'.format(language)) gr.add(message.reply_channel) message.channel_session...
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Channels connection setup. Register the current client on the related Group according to the language
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python
train
38.2
pybel/pybel-tools
src/pybel_tools/mutation/expansion.py
https://github.com/pybel/pybel-tools/blob/3491adea0ac4ee60f57275ef72f9b73da6dbfe0c/src/pybel_tools/mutation/expansion.py#L299-L324
def expand_internal(universe: BELGraph, graph: BELGraph, edge_predicates: EdgePredicates = None) -> None: """Edges between entities in the sub-graph that pass the given filters. :param universe: The full graph :param graph: A sub-graph to find the upstream information :param edge_predicates: Optional l...
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Edges between entities in the sub-graph that pass the given filters. :param universe: The full graph :param graph: A sub-graph to find the upstream information :param edge_predicates: Optional list of edge filter functions (graph, node, node, key, data) -> bool
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python
valid
39.346154
Fizzadar/pyinfra
pyinfra/modules/mysql.py
https://github.com/Fizzadar/pyinfra/blob/006f751f7db2e07d32522c0285160783de2feb79/pyinfra/modules/mysql.py#L306-L328
def dump( state, host, remote_filename, database=None, # Details for speaking to MySQL via `mysql` CLI mysql_user=None, mysql_password=None, mysql_host=None, mysql_port=None, ): ''' Dump a MySQL database into a ``.sql`` file. Requires ``mysqldump``. + database: name of the database to d...
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Dump a MySQL database into a ``.sql`` file. Requires ``mysqldump``. + database: name of the database to dump + remote_filename: name of the file to dump the SQL to + mysql_*: global module arguments, see above
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python
train
28.652174
apache/airflow
scripts/perf/scheduler_ops_metrics.py
https://github.com/apache/airflow/blob/b69c686ad8a0c89b9136bb4b31767257eb7b2597/scripts/perf/scheduler_ops_metrics.py#L103-L135
def heartbeat(self): """ Override the scheduler heartbeat to determine when the test is complete """ super(SchedulerMetricsJob, self).heartbeat() session = settings.Session() # Get all the relevant task instances TI = TaskInstance successful_tis = ( ...
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Override the scheduler heartbeat to determine when the test is complete
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python
test
38.818182
SatelliteQE/nailgun
nailgun/entities.py
https://github.com/SatelliteQE/nailgun/blob/c36d8c20862e87bf6975bd48ac1ca40a9e634eaa/nailgun/entities.py#L4684-L4692
def create(self, create_missing=None): """Manually fetch a complete set of attributes for this entity. For more information, see `Bugzilla #1216236 <https://bugzilla.redhat.com/show_bug.cgi?id=1216236>`_. """ attrs = self.create_json(create_missing) return Location(self...
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Manually fetch a complete set of attributes for this entity. For more information, see `Bugzilla #1216236 <https://bugzilla.redhat.com/show_bug.cgi?id=1216236>`_.
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python
train
39
SpriteLink/NIPAP
nipap/nipap/backend.py
https://github.com/SpriteLink/NIPAP/blob/f96069f11ab952d80b13cab06e0528f2d24b3de9/nipap/nipap/backend.py#L3954-L4050
def search_asn(self, auth, query, search_options=None): """ Search ASNs for entries matching 'query' * `auth` [BaseAuth] AAA options. * `query` [dict_to_sql] How the search should be performed. * `search_options` [options_dict] ...
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python
train
39.494845
blockstack/blockstack-core
blockstack/lib/snv.py
https://github.com/blockstack/blockstack-core/blob/1dcfdd39b152d29ce13e736a6a1a0981401a0505/blockstack/lib/snv.py#L58-L68
def get_bitcoind_client(): """ Connect to the bitcoind node """ bitcoind_opts = get_bitcoin_opts() bitcoind_host = bitcoind_opts['bitcoind_server'] bitcoind_port = bitcoind_opts['bitcoind_port'] bitcoind_user = bitcoind_opts['bitcoind_user'] bitcoind_passwd = bitcoind_opts['bitcoind_pass...
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Connect to the bitcoind node
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python
train
39.454545
SALib/SALib
src/SALib/sample/morris/local.py
https://github.com/SALib/SALib/blob/9744d73bb17cfcffc8282c7dc4a727efdc4bea3f/src/SALib/sample/morris/local.py#L91-L121
def sum_distances(self, indices, distance_matrix): """Calculate combinatorial distance between a select group of trajectories, indicated by indices Arguments --------- indices : tuple distance_matrix : numpy.ndarray (M,M) Returns ------- numpy.nd...
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Calculate combinatorial distance between a select group of trajectories, indicated by indices Arguments --------- indices : tuple distance_matrix : numpy.ndarray (M,M) Returns ------- numpy.ndarray Notes ----- This function can p...
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python
train
32.548387
gholt/swiftly
swiftly/cli/iomanager.py
https://github.com/gholt/swiftly/blob/5bcc1c65323b1caf1f85adbefd9fc4988c072149/swiftly/cli/iomanager.py#L98-L108
def os_path_to_client_path(self, os_path): """ Converts an operating system path into a client path by replacing instances of os.path.sep with '/'. Note: If the client path contains any instances of '/' already, they will be replaced with '-'. """ if os.path.sep ...
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Converts an operating system path into a client path by replacing instances of os.path.sep with '/'. Note: If the client path contains any instances of '/' already, they will be replaced with '-'.
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python
test
37.363636
wandb/client
wandb/vendor/prompt_toolkit/key_binding/bindings/named_commands.py
https://github.com/wandb/client/blob/7d08954ed5674fee223cd85ed0d8518fe47266b2/wandb/vendor/prompt_toolkit/key_binding/bindings/named_commands.py#L403-L409
def yank_last_arg(event): """ Like `yank_nth_arg`, but if no argument has been given, yank the last word of each line. """ n = (event.arg if event.arg_present else None) event.current_buffer.yank_last_arg(n)
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Like `yank_nth_arg`, but if no argument has been given, yank the last word of each line.
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python
train
32.142857
rycus86/prometheus_flask_exporter
prometheus_flask_exporter/__init__.py
https://github.com/rycus86/prometheus_flask_exporter/blob/678dbf3097e82a0ddb697268406004cc1f4a26bc/prometheus_flask_exporter/__init__.py#L480-L495
def do_not_track(): """ Decorator to skip the default metrics collection for the method. *Note*: explicit metrics decorators will still collect the data """ def decorator(f): @functools.wraps(f) def func(*args, **kwargs): request.prom_do_...
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Decorator to skip the default metrics collection for the method. *Note*: explicit metrics decorators will still collect the data
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python
train
25.875
rabitt/pysox
sox/file_info.py
https://github.com/rabitt/pysox/blob/eae89bde74567136ec3f723c3e6b369916d9b837/sox/file_info.py#L134-L153
def num_samples(input_filepath): ''' Show number of samples (0 if unavailable). Parameters ---------- input_filepath : str Path to audio file. Returns ------- n_samples : int total number of samples in audio file. Returns 0 if empty or unavailable ''' va...
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Show number of samples (0 if unavailable). Parameters ---------- input_filepath : str Path to audio file. Returns ------- n_samples : int total number of samples in audio file. Returns 0 if empty or unavailable
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python
valid
24.85
googledatalab/pydatalab
solutionbox/image_classification/mltoolbox/image/classification/_util.py
https://github.com/googledatalab/pydatalab/blob/d9031901d5bca22fe0d5925d204e6698df9852e1/solutionbox/image_classification/mltoolbox/image/classification/_util.py#L192-L208
def decode_and_resize(image_str_tensor): """Decodes jpeg string, resizes it and returns a uint8 tensor.""" # These constants are set by Inception v3's expectations. height = 299 width = 299 channels = 3 image = tf.image.decode_jpeg(image_str_tensor, channels=channels) # Note resize expects a batch_size,...
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Decodes jpeg string, resizes it and returns a uint8 tensor.
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python
train
38.294118
graphql-python/graphql-core
graphql/execution/values.py
https://github.com/graphql-python/graphql-core/blob/d8e9d3abe7c209eb2f51cf001402783bfd480596/graphql/execution/values.py#L34-L86
def get_variable_values( schema, # type: GraphQLSchema definition_asts, # type: List[VariableDefinition] inputs, # type: Any ): # type: (...) -> Dict[str, Any] """Prepares an object map of variables of the correct type based on the provided variable definitions and arbitrary input. If the inp...
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Prepares an object map of variables of the correct type based on the provided variable definitions and arbitrary input. If the input cannot be parsed to match the variable definitions, a GraphQLError will be thrown.
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python
train
39.226415
Chilipp/psyplot
psyplot/data.py
https://github.com/Chilipp/psyplot/blob/75a0a15a9a1dd018e79d2df270d56c4bf5f311d5/psyplot/data.py#L3855-L4013
def array_info(self, dump=None, paths=None, attrs=True, standardize_dims=True, pwd=None, use_rel_paths=True, alternative_paths={}, ds_description={'fname', 'store'}, full_ds=True, copy=False, **kwargs): """ Get dimension informations on you arrays...
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Get dimension informations on you arrays This method returns a dictionary containing informations on the array in this instance Parameters ---------- dump: bool If True and the dataset has not been dumped so far, it is dumped to a temporary file or the o...
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python
train
42.314465
brainiak/brainiak
brainiak/isc.py
https://github.com/brainiak/brainiak/blob/408f12dec2ff56559a26873a848a09e4c8facfeb/brainiak/isc.py#L1386-L1519
def phaseshift_isc(data, pairwise=False, summary_statistic='median', n_shifts=1000, tolerate_nans=True, random_state=None): """Phase randomization for one-sample ISC test For each voxel or ROI, compute the actual ISC and p-values from a null distribution of ISCs where response time seri...
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Phase randomization for one-sample ISC test For each voxel or ROI, compute the actual ISC and p-values from a null distribution of ISCs where response time series are phase randomized prior to computing ISC. If pairwise, apply phase randomization to each subject and compute pairwise ISCs. If leave-...
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python
train
42.850746
astroML/gatspy
gatspy/datasets/rrlyrae.py
https://github.com/astroML/gatspy/blob/a8f94082a3f27dfe9cb58165707b883bf28d9223/gatspy/datasets/rrlyrae.py#L125-L173
def get_lightcurve(self, star_id, return_1d=True): """Get the light curves for the given ID Parameters ---------- star_id : int A valid integer star id representing an object in the dataset return_1d : boolean (default=True) Specify whether to return 1D a...
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Get the light curves for the given ID Parameters ---------- star_id : int A valid integer star id representing an object in the dataset return_1d : boolean (default=True) Specify whether to return 1D arrays of (t, y, dy, filts) or 2D arrays of (t, y, ...
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python
train
33.714286
greenelab/PathCORE-T
pathcore/network.py
https://github.com/greenelab/PathCORE-T/blob/9d079d5ebffea2fe9fb9ab557588d51ad67d2c9c/pathcore/network.py#L568-L652
def _pathway_feature_permutation(pathway_feature_tuples, permutation_max_iters): """Permute the pathways across features for one side in the network. Used in `permute_pathways_across_features` Parameters ----------- pathway_feature_tuples : list(tup(str, int)) ...
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Permute the pathways across features for one side in the network. Used in `permute_pathways_across_features` Parameters ----------- pathway_feature_tuples : list(tup(str, int)) a tuple list [(pathway, feature)] where the pathway, feature pairing indicates that a pathway was overrepresented ...
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python
train
43.964706
tensorflow/cleverhans
cleverhans/plot/success_fail.py
https://github.com/tensorflow/cleverhans/blob/97488e215760547b81afc53f5e5de8ba7da5bd98/cleverhans/plot/success_fail.py#L18-L54
def plot_report_from_path(path, success_name=DEFAULT_SUCCESS_NAME, fail_names=DEFAULT_FAIL_NAMES, label=None, is_max_confidence=True, linewidth=LINEWIDTH, plot_upper_bound=True): """ Plots a success-fail curve fr...
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Plots a success-fail curve from a confidence report stored on disk, :param path: string filepath for the stored report. (Should be the output of make_confidence_report*.py) :param success_name: The name (confidence report key) of the data that should be used to measure success rate :param fail_names: A li...
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python
train
57.972973
fabioz/PyDev.Debugger
pydevd_attach_to_process/winappdbg/textio.py
https://github.com/fabioz/PyDev.Debugger/blob/ed9c4307662a5593b8a7f1f3389ecd0e79b8c503/pydevd_attach_to_process/winappdbg/textio.py#L197-L235
def integer_list_file(cls, filename): """ Read a list of integers from a file. The file format is: - # anywhere in the line begins a comment - leading and trailing spaces are ignored - empty lines are ignored - integers can be specified as: - dec...
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Read a list of integers from a file. The file format is: - # anywhere in the line begins a comment - leading and trailing spaces are ignored - empty lines are ignored - integers can be specified as: - decimal numbers ("100" is 100) - hexadecimal numb...
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python
train
31.923077
shaunduncan/smokesignal
smokesignal.py
https://github.com/shaunduncan/smokesignal/blob/7906ad0e469b5d4121377c9ee67f77d2f140f2b9/smokesignal.py#L242-L249
def clear(*signals): """ Clears all callbacks for a particular signal or signals """ signals = signals if signals else receivers.keys() for signal in signals: receivers[signal].clear()
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Clears all callbacks for a particular signal or signals
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python
train
25.75
icholy/durationpy
durationpy/duration.py
https://github.com/icholy/durationpy/blob/c67ec62dc6e28807c8a06a23074459cf1671aac0/durationpy/duration.py#L33-L58
def from_str(duration): """Parse a duration string to a datetime.timedelta""" if duration in ("0", "+0", "-0"): return datetime.timedelta() pattern = re.compile('([\d\.]+)([a-zµμ]+)') total = 0 sign = -1 if duration[0] == '-' else 1 matches = pattern.findall(duration) if not len(m...
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Parse a duration string to a datetime.timedelta
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python
train
31.730769
deepmipt/DeepPavlov
deeppavlov/agents/rich_content/default_rich_content.py
https://github.com/deepmipt/DeepPavlov/blob/f3e4a69a3764d25d2f5bad4f1f1aebc872b00f9c/deeppavlov/agents/rich_content/default_rich_content.py#L152-L170
def json(self) -> dict: """Returns json compatible state of the ButtonsFrame instance. Returns json compatible state of the ButtonsFrame instance including all nested buttons. Returns: control_json: Json representation of ButtonsFrame state. """ content = {}...
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Returns json compatible state of the ButtonsFrame instance. Returns json compatible state of the ButtonsFrame instance including all nested buttons. Returns: control_json: Json representation of ButtonsFrame state.
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python
test
27.526316
corydolphin/flask-cors
flask_cors/core.py
https://github.com/corydolphin/flask-cors/blob/13fbb1ea4c1bb422de91a726c3c7f1038d3743a3/flask_cors/core.py#L349-L378
def serialize_options(opts): """ A helper method to serialize and processes the options dictionary. """ options = (opts or {}).copy() for key in opts.keys(): if key not in DEFAULT_OPTIONS: LOG.warning("Unknown option passed to Flask-CORS: %s", key) # Ensure origins is a li...
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A helper method to serialize and processes the options dictionary.
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python
valid
38.966667
openearth/bmi-python
bmi/wrapper.py
https://github.com/openearth/bmi-python/blob/2f53f24d45515eb0711c2d28ddd6c1582045248f/bmi/wrapper.py#L429-L438
def inq_compound(self, name): """ Return the number of fields and size (not yet) of a compound type. """ name = create_string_buffer(name) self.library.inq_compound.argtypes = [c_char_p, POINTER(c_int)] self.library.inq_compound.restype = None nfields = c_int() ...
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Return the number of fields and size (not yet) of a compound type.
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python
train
39.3
apache/airflow
airflow/contrib/hooks/mongo_hook.py
https://github.com/apache/airflow/blob/b69c686ad8a0c89b9136bb4b31767257eb7b2597/airflow/contrib/hooks/mongo_hook.py#L281-L297
def delete_many(self, mongo_collection, filter_doc, mongo_db=None, **kwargs): """ Deletes one or more documents in a mongo collection. https://api.mongodb.com/python/current/api/pymongo/collection.html#pymongo.collection.Collection.delete_many :param mongo_collection: The name of the co...
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Deletes one or more documents in a mongo collection. https://api.mongodb.com/python/current/api/pymongo/collection.html#pymongo.collection.Collection.delete_many :param mongo_collection: The name of the collection to delete from. :type mongo_collection: str :param filter_doc: A query th...
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python
test
46.352941
learningequality/morango
morango/api/permissions.py
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/api/permissions.py#L15-L43
def authenticate_credentials(self, userargs, password, request=None): """ Authenticate the userargs and password against Django auth backends. The "userargs" string may be just the username, or a querystring-encoded set of params. """ credentials = { 'password': pass...
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Authenticate the userargs and password against Django auth backends. The "userargs" string may be just the username, or a querystring-encoded set of params.
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python
valid
36.793103
apache/incubator-mxnet
example/gluon/lipnet/utils/download_data.py
https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/gluon/lipnet/utils/download_data.py#L28-L52
def download_mp4(from_idx, to_idx, _params): """ download mp4s """ succ = set() fail = set() for idx in range(from_idx, to_idx): name = 's' + str(idx) save_folder = '{src_path}/{nm}'.format(src_path=_params['src_path'], nm=name) if idx == 0 or os.path.isdir(save_folder): ...
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download mp4s
[ "download", "mp4s" ]
python
train
37.4
daviddrysdale/python-phonenumbers
python/phonenumbers/phonenumberutil.py
https://github.com/daviddrysdale/python-phonenumbers/blob/9cc5bb4ab5e661e70789b4c64bf7a9383c7bdc20/python/phonenumbers/phonenumberutil.py#L2552-L2572
def _parse_prefix_as_idd(idd_pattern, number): """Strips the IDD from the start of the number if present. Helper function used by _maybe_strip_i18n_prefix_and_normalize(). Returns a 2-tuple: - Boolean indicating if IDD was stripped - Number with IDD stripped """ match = idd_pattern.mat...
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Strips the IDD from the start of the number if present. Helper function used by _maybe_strip_i18n_prefix_and_normalize(). Returns a 2-tuple: - Boolean indicating if IDD was stripped - Number with IDD stripped
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python
train
38.666667
Unidata/siphon
siphon/simplewebservice/iastate.py
https://github.com/Unidata/siphon/blob/53fb0d84fbce1c18c8e81c9e68bc81620ee0a6ac/siphon/simplewebservice/iastate.py#L53-L75
def request_all_data(cls, time, pressure=None, **kwargs): """Retrieve upper air observations from Iowa State's archive for all stations. Parameters ---------- time : datetime The date and time of the desired observation. pressure : float, optional The ma...
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Retrieve upper air observations from Iowa State's archive for all stations. Parameters ---------- time : datetime The date and time of the desired observation. pressure : float, optional The mandatory pressure level at which to request data (in hPa). If none is ...
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python
train
31.826087
cortical-io/retina-sdk.py
retinasdk/full_client.py
https://github.com/cortical-io/retina-sdk.py/blob/474c13ad399fe1e974d2650335537608f4456b07/retinasdk/full_client.py#L116-L126
def getTokensForText(self, body, POStags=None): """Get tokenized input text Args: body, str: The text to be tokenized (required) POStags, str: Specify desired POS types (optional) Returns: list of str Raises: CorticalioException: if the req...
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Get tokenized input text Args: body, str: The text to be tokenized (required) POStags, str: Specify desired POS types (optional) Returns: list of str Raises: CorticalioException: if the request was not successful
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python
train
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pypa/pipenv
pipenv/vendor/pexpect/screen.py
https://github.com/pypa/pipenv/blob/cae8d76c210b9777e90aab76e9c4b0e53bb19cde/pipenv/vendor/pexpect/screen.py#L138-L144
def pretty (self): '''This returns a copy of the screen as a unicode string with an ASCII text box around the screen border. This is similar to __str__/__unicode__ except that it adds a box.''' top_bot = u'+' + u'-'*self.cols + u'+\n' return top_bot + u'\n'.join([u'|'+line+u'|' ...
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This returns a copy of the screen as a unicode string with an ASCII text box around the screen border. This is similar to __str__/__unicode__ except that it adds a box.
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python
train
53.142857
marcomusy/vtkplotter
vtkplotter/analysis.py
https://github.com/marcomusy/vtkplotter/blob/692c3396782722ec525bc1346a26999868c650c6/vtkplotter/analysis.py#L1696-L1729
def convexHull(actor_or_list, alphaConstant=0): """ Create a 3D Delaunay triangulation of input points. :param actor_or_list: can be either an ``Actor`` or a list of 3D points. :param float alphaConstant: For a non-zero alpha value, only verts, edges, faces, or tetra contained within the circum...
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Create a 3D Delaunay triangulation of input points. :param actor_or_list: can be either an ``Actor`` or a list of 3D points. :param float alphaConstant: For a non-zero alpha value, only verts, edges, faces, or tetra contained within the circumsphere (of radius alpha) will be output. Otherwise, ...
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python
train
33.529412
QUANTAXIS/QUANTAXIS
QUANTAXIS/QAData/base_datastruct.py
https://github.com/QUANTAXIS/QUANTAXIS/blob/bb1fe424e4108b62a1f712b81a05cf829297a5c0/QUANTAXIS/QAData/base_datastruct.py#L1180-L1199
def select_day(self, day): """选取日期(一般用于分钟线) Arguments: day {[type]} -- [description] Raises: ValueError -- [description] Returns: [type] -- [description] """ def _select_day(day): return self.data.loc[day, slice(None)] ...
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python
train
23.45
tanghaibao/jcvi
jcvi/formats/bed.py
https://github.com/tanghaibao/jcvi/blob/d2e31a77b6ade7f41f3b321febc2b4744d1cdeca/jcvi/formats/bed.py#L956-L981
def mergebydepth(args): """ %prog mergebydepth reads.bed genome.fasta Similar to mergeBed, but only returns regions beyond certain depth. """ p = OptionParser(mergebydepth.__doc__) p.add_option("--mindepth", default=3, type="int", help="Minimum depth required") opts, args =...
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%prog mergebydepth reads.bed genome.fasta Similar to mergeBed, but only returns regions beyond certain depth.
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python
train
32.384615
iotile/coretools
iotilebuild/iotile/build/config/scons-local-3.0.1/SCons/Tool/tex.py
https://github.com/iotile/coretools/blob/2d794f5f1346b841b0dcd16c9d284e9bf2f3c6ec/iotilebuild/iotile/build/config/scons-local-3.0.1/SCons/Tool/tex.py#L865-L976
def generate_common(env): """Add internal Builders and construction variables for LaTeX to an Environment.""" # Add OSX system paths so TeX tools can be found # when a list of tools is given the exists() method is not called generate_darwin(env) # A generic tex file Action, sufficient for all tex ...
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Add internal Builders and construction variables for LaTeX to an Environment.
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python
train
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awacha/credolib
credolib/atsas.py
https://github.com/awacha/credolib/blob/11c0be3eea7257d3d6e13697d3e76ce538f2f1b2/credolib/atsas.py#L443-L518
def gnom(curve, Rmax, outputfilename=None, Npoints_realspace=None, initial_alpha=None): """Run GNOM on the dataset. Inputs: curve: an instance of sastool.classes2.Curve or anything which has a save() method, saving the scattering curve to a given .dat file, in q=4*pi*sin(theta)/...
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Run GNOM on the dataset. Inputs: curve: an instance of sastool.classes2.Curve or anything which has a save() method, saving the scattering curve to a given .dat file, in q=4*pi*sin(theta)/lambda [1/nm] units Rmax: the estimated maximum extent of the scattering object, in nm....
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python
train
55.210526
brutasse/graphite-api
graphite_api/_vendor/whisper.py
https://github.com/brutasse/graphite-api/blob/0886b7adcf985a1e8bcb084f6dd1dc166a3f3dff/graphite_api/_vendor/whisper.py#L727-L739
def info(path): """info(path) path is a string """ fh = None try: fh = open(path,'rb') return __readHeader(fh) finally: if fh: fh.close() return None
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info(path) path is a string
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python
train
12.769231
shoebot/shoebot
lib/graph/proximity.py
https://github.com/shoebot/shoebot/blob/d554c1765c1899fa25727c9fc6805d221585562b/lib/graph/proximity.py#L23-L46
def depth_first_search(root, visit=lambda node: False, traversable=lambda node, edge: True): """ Simple, multi-purpose depth-first search. Visits all the nodes connected to the root, depth-first. The visit function is called on each node. Recursion will stop if it returns True, and ubsequently dfs...
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Simple, multi-purpose depth-first search. Visits all the nodes connected to the root, depth-first. The visit function is called on each node. Recursion will stop if it returns True, and ubsequently dfs() will return True. The traversable function takes the current node and edge, and returns Tru...
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python
valid
38.791667
numenta/nupic
examples/tm/tm_high_order.py
https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/examples/tm/tm_high_order.py#L53-L75
def corruptVector(v1, noiseLevel, numActiveCols): """ Corrupts a copy of a binary vector by inverting noiseLevel percent of its bits. @param v1 (array) binary vector whose copy will be corrupted @param noiseLevel (float) amount of noise to be applied on the new vector @param numActiveCols (int) num...
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python
valid
31
Esri/ArcREST
src/arcrest/common/symbology.py
https://github.com/Esri/ArcREST/blob/ab240fde2b0200f61d4a5f6df033516e53f2f416/src/arcrest/common/symbology.py#L240-L247
def value(self): """gets the color value""" return { "type" : self._type, "style" : self._style, "color" : self._color.value, "width" : self._width }
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gets the color value
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python
train
26.75
tensorflow/tensor2tensor
tensor2tensor/utils/pruning_utils.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/utils/pruning_utils.py#L27-L33
def weight(w, sparsity): """Weight-level magnitude pruning.""" w_shape = common_layers.shape_list(w) k = int(np.prod(w_shape[:-1])) count = tf.to_int32(k * sparsity) mask = common_layers.weight_targeting(w, count) return (1 - mask) * w
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Weight-level magnitude pruning.
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python
train
34.428571
mwouts/jupytext
jupytext/contentsmanager.py
https://github.com/mwouts/jupytext/blob/eb7d6aee889f80ad779cfc53441c648f0db9246d/jupytext/contentsmanager.py#L222-L293
def save(self, model, path=''): """Save the file model and return the model with no content.""" if model['type'] != 'notebook': return super(TextFileContentsManager, self).save(model, path) nbk = model['content'] try: metadata = nbk.get('metadata') re...
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Save the file model and return the model with no content.
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python
train
44.458333
cmorisse/ikp3db
ikp3db.py
https://github.com/cmorisse/ikp3db/blob/a0f318d4e8494b2e6f2f07ec0f1202ca023c920f/ikp3db.py#L228-L284
def send(self, command, _id=None, result={}, frames=[], threads=None, error_messages=[], warning_messages=[], info_messages=[], exception=None): """ Build a message from parameters and send it to debugger. :param command: The command sent to the debugger client. ...
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Build a message from parameters and send it to debugger. :param command: The command sent to the debugger client. :type command: str :param _id: Unique id of the sent message. Right now, it's always `None` for messages by debugger to client. :type _i...
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python
train
41.526316
onnx/onnxmltools
onnxmltools/convert/coreml/shape_calculators/OneHotEncoder.py
https://github.com/onnx/onnxmltools/blob/d4e4c31990fc2d9fd1f92139f497d360914c9df2/onnxmltools/convert/coreml/shape_calculators/OneHotEncoder.py#L12-L36
def calculate_one_hot_encoder_output_shapes(operator): ''' Allowed input/output patterns are 1. [N, 1] ---> [N, C'] C' is the total number of categorical values. ''' check_input_and_output_numbers(operator, input_count_range=1, output_count_range=1) if operator.inputs[0].type.shape[1] ...
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Allowed input/output patterns are 1. [N, 1] ---> [N, C'] C' is the total number of categorical values.
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python
train
45.92
tanghaibao/jcvi
jcvi/compara/quota.py
https://github.com/tanghaibao/jcvi/blob/d2e31a77b6ade7f41f3b321febc2b4744d1cdeca/jcvi/compara/quota.py#L152-L198
def format_lp(nodes, constraints_x, qa, constraints_y, qb): """ Maximize 4 x1 + 2 x2 + 3 x3 + x4 Subject To x1 + x2 <= 1 End """ lp_handle = cStringIO.StringIO() lp_handle.write("Maximize\n ") records = 0 for i, score in nodes: lp_handle.write("+ %d x%d " % (score,...
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Maximize 4 x1 + 2 x2 + 3 x3 + x4 Subject To x1 + x2 <= 1 End
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python
train
27.553191
Kortemme-Lab/pull_into_place
pull_into_place/pipeline.py
https://github.com/Kortemme-Lab/pull_into_place/blob/247f303100a612cc90cf31c86e4fe5052eb28c8d/pull_into_place/pipeline.py#L844-L863
def load_loops(directory, loops_path=None): """ Return a list of tuples indicating the start and end points of the loops that were sampled in the given directory. """ if loops_path is None: workspace = workspace_from_dir(directory) loops_path = workspace.loops_path from klab.ro...
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Return a list of tuples indicating the start and end points of the loops that were sampled in the given directory.
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python
train
40.25
eumis/pyviews
pyviews/core/ioc.py
https://github.com/eumis/pyviews/blob/80a868242ee9cdc6f4ded594b3e0544cc238ed55/pyviews/core/ioc.py#L81-L83
def register(key, initializer: callable, param=None): '''Adds resolver to global container''' get_current_scope().container.register(key, initializer, param)
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Adds resolver to global container
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python
train
54.333333
ClearcodeHQ/matchbox
src/matchbox/index.py
https://github.com/ClearcodeHQ/matchbox/blob/22f5bd163ad22ceacb0fcd5d4ddae9069d1a94f4/src/matchbox/index.py#L153-L180
def add_match(self, entity, *traits): """ Add a matching entity to the index. We have to maintain the constraints of the data layout: - `self.mismatch_unknown` must still contain all matched entities - each key of the index must mismatch all known matching entities excep...
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python
train
50.928571
jupyter-widgets/ipywidgets
ipywidgets/widgets/widget.py
https://github.com/jupyter-widgets/ipywidgets/blob/36fe37594cd5a268def228709ca27e37b99ac606/ipywidgets/widgets/widget.py#L117-L130
def _remove_buffers(state): """Return (state_without_buffers, buffer_paths, buffers) for binary message parts A binary message part is a memoryview, bytearray, or python 3 bytes object. As an example: >>> state = {'plain': [0, 'text'], 'x': {'ar': memoryview(ar1)}, 'y': {'shape': (10,10), 'data': memo...
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Return (state_without_buffers, buffer_paths, buffers) for binary message parts A binary message part is a memoryview, bytearray, or python 3 bytes object. As an example: >>> state = {'plain': [0, 'text'], 'x': {'ar': memoryview(ar1)}, 'y': {'shape': (10,10), 'data': memoryview(ar2)}} >>> _remove_buffe...
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python
train
46.5
pmichali/whodunit
whodunit/__init__.py
https://github.com/pmichali/whodunit/blob/eed9107533766d716469e35fbb647a39dfa07035/whodunit/__init__.py#L195-L218
def collect_blame_info(cls, matches): """Runs git blame on files, for the specified sets of line ranges. If no line range tuples are provided, it will do all lines. """ old_area = None for filename, ranges in matches: area, name = os.path.split(filename) ...
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Runs git blame on files, for the specified sets of line ranges. If no line range tuples are provided, it will do all lines.
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python
train
39.5
pydata/xarray
xarray/core/coordinates.py
https://github.com/pydata/xarray/blob/6d93a95d05bdbfc33fff24064f67d29dd891ab58/xarray/core/coordinates.py#L93-L101
def _merge_raw(self, other): """For use with binary arithmetic.""" if other is None: variables = OrderedDict(self.variables) else: # don't align because we already called xarray.align variables = expand_and_merge_variables( [self.variables, oth...
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For use with binary arithmetic.
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python
train
39
GNS3/gns3-server
gns3server/controller/snapshot.py
https://github.com/GNS3/gns3-server/blob/a221678448fb5d24e977ef562f81d56aacc89ab1/gns3server/controller/snapshot.py#L75-L92
def restore(self): """ Restore the snapshot """ yield from self._project.delete_on_computes() # We don't send close notif to clients because the close / open dance is purely internal yield from self._project.close(ignore_notification=True) self._project.controlle...
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Restore the snapshot
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python
train
48.388889
rerb/django-fortune
fortune/views.py
https://github.com/rerb/django-fortune/blob/f84d34f616ecabd4fab8351ad7d3062cc9d6b127/fortune/views.py#L30-L35
def loaded(self, request, *args, **kwargs): """Return a list of loaded Packs. """ serializer = self.get_serializer(list(Pack.objects.all()), many=True) return Response(serializer.data)
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Return a list of loaded Packs.
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python
train
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brocade/pynos
pynos/versions/ver_7/ver_7_1_0/yang/brocade_fabric_service.py
https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/ver_7/ver_7_1_0/yang/brocade_fabric_service.py#L825-L839
def show_fabric_trunk_info_output_show_trunk_list_trunk_list_groups_trunk_list_member_trunk_list_src_port(self, **kwargs): """Auto Generated Code """ config = ET.Element("config") show_fabric_trunk_info = ET.Element("show_fabric_trunk_info") config = show_fabric_trunk_info ...
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Auto Generated Code
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python
train
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JdeRobot/base
src/drivers/MAVLinkServer/MAVProxy/pymavlink/generator/mavgen_swift.py
https://github.com/JdeRobot/base/blob/303b18992785b2fe802212f2d758a60873007f1f/src/drivers/MAVLinkServer/MAVProxy/pymavlink/generator/mavgen_swift.py#L328-L362
def generate_enums_info(enums, msgs): """Add camel case swift names for enums an entries, descriptions and sort enums alphabetically""" for enum in enums: enum.swift_name = camel_case_from_underscores(enum.name) enum.raw_value_type = get_enum_raw_type(enum, msgs) enum.formatted_descrip...
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Add camel case swift names for enums an entries, descriptions and sort enums alphabetically
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python
train
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pycontribs/pyrax
pyrax/clouddatabases.py
https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/pyrax/clouddatabases.py#L683-L696
def _configure_manager(self): """ Creates a manager to handle the instances, and another to handle flavors. """ self._manager = CloudDatabaseManager(self, resource_class=CloudDatabaseInstance, response_key="instance", uri_base="instances") ...
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Creates a manager to handle the instances, and another to handle flavors.
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python
train
45.214286
anrosent/perg
enum.py
https://github.com/anrosent/perg/blob/53293f7ed5e0f2e45fb185b60e344ea8436f02aa/enum.py#L88-L100
def enum_subpattern(p): subpattern_id, d = p patterns = list(enum_gen(d)) ''' if subpattern_id: subpat_iter = EnumSubpatternIterator(subpattern_id, patterns) SUBPATTERNS[subpattern_id] = subpat_iter return subpat_iter else: return patterns ''' return patt...
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if subpattern_id: subpat_iter = EnumSubpatternIterator(subpattern_id, patterns) SUBPATTERNS[subpattern_id] = subpat_iter return subpat_iter else: return patterns
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python
train
24
SetBased/py-stratum
pystratum/RoutineLoaderHelper.py
https://github.com/SetBased/py-stratum/blob/7c5ffaa2fdd03f865832a5190b5897ff2c0e3155/pystratum/RoutineLoaderHelper.py#L599-L617
def _print_sql_with_error(self, sql, error_line): """ Writes a SQL statement with an syntax error to the output. The line where the error occurs is highlighted. :param str sql: The SQL statement. :param int error_line: The line where the error occurs. """ if os.linesep i...
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Writes a SQL statement with an syntax error to the output. The line where the error occurs is highlighted. :param str sql: The SQL statement. :param int error_line: The line where the error occurs.
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python
train
40.578947
IntelPython/mkl_fft
mkl_fft/_numpy_fft.py
https://github.com/IntelPython/mkl_fft/blob/54b3271d64666f9af9f11418b4ca43d69054eb94/mkl_fft/_numpy_fft.py#L682-L778
def ifftn(a, s=None, axes=None, norm=None): """ Compute the N-dimensional inverse discrete Fourier Transform. This function computes the inverse of the N-dimensional discrete Fourier Transform over any number of axes in an M-dimensional array by means of the Fast Fourier Transform (FFT). In other ...
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Compute the N-dimensional inverse discrete Fourier Transform. This function computes the inverse of the N-dimensional discrete Fourier Transform over any number of axes in an M-dimensional array by means of the Fast Fourier Transform (FFT). In other words, ``ifftn(fftn(a)) == a`` to within numerical a...
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python
train
39.845361
r4fek/django-cassandra-engine
django_cassandra_engine/base/operations.py
https://github.com/r4fek/django-cassandra-engine/blob/b43f8fddd4bba143f03f73f8bbfc09e6b32c699b/django_cassandra_engine/base/operations.py#L36-L47
def sql_flush(self, style, tables, sequences, allow_cascade=False): """ Truncate all existing tables in current keyspace. :returns: an empty list """ for table in tables: qs = "TRUNCATE {}".format(table) self.connection.connection.execute(qs) re...
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Truncate all existing tables in current keyspace. :returns: an empty list
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python
train
26.333333
bukun/TorCMS
torcms/model/user_model.py
https://github.com/bukun/TorCMS/blob/6567c7fe2604a1d646d4570c017840958630ed2b/torcms/model/user_model.py#L186-L195
def update_time_login(u_name): ''' Update the login time for user. ''' entry = TabMember.update( time_login=tools.timestamp() ).where( TabMember.user_name == u_name ) entry.execute()
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Update the login time for user.
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python
train
25.3