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gwastro/pycbc-glue
pycbc_glue/ligolw/lsctables.py
https://github.com/gwastro/pycbc-glue/blob/a3e906bae59fbfd707c3ff82e5d008d939ec5e24/pycbc_glue/ligolw/lsctables.py#L2121-L2128
def get_slide_number(self): """ Return the slide-number for this trigger """ a, slide_number, b = self.get_id_parts() if slide_number > 5000: slide_number = 5000 - slide_number return slide_number
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Return the slide-number for this trigger
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python
train
25.5
saltstack/salt
salt/modules/freebsdkmod.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/freebsdkmod.py#L83-L91
def _set_persistent_module(mod): ''' Add a module to loader.conf to make it persistent. ''' if not mod or mod in mod_list(True) or mod not in \ available(): return set() __salt__['file.append'](_LOADER_CONF, _LOAD_MODULE.format(mod)) return set([mod])
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Add a module to loader.conf to make it persistent.
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python
train
31.888889
AdvancedClimateSystems/uModbus
umodbus/utils.py
https://github.com/AdvancedClimateSystems/uModbus/blob/0560a42308003f4072d988f28042b8d55b694ad4/umodbus/utils.py#L10-L23
def log_to_stream(stream=sys.stderr, level=logging.NOTSET, fmt=logging.BASIC_FORMAT): """ Add :class:`logging.StreamHandler` to logger which logs to a stream. :param stream. Stream to log to, default STDERR. :param level: Log level, default NOTSET. :param fmt: String with log format, ...
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Add :class:`logging.StreamHandler` to logger which logs to a stream. :param stream. Stream to log to, default STDERR. :param level: Log level, default NOTSET. :param fmt: String with log format, default is BASIC_FORMAT.
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python
train
34.357143
GNS3/gns3-server
gns3server/utils/images.py
https://github.com/GNS3/gns3-server/blob/a221678448fb5d24e977ef562f81d56aacc89ab1/gns3server/utils/images.py#L188-L195
def remove_checksum(path): """ Remove the checksum of an image from cache if exists """ path = '{}.md5sum'.format(path) if os.path.exists(path): os.remove(path)
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Remove the checksum of an image from cache if exists
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python
train
22.75
EventRegistry/event-registry-python
eventregistry/TopicPage.py
https://github.com/EventRegistry/event-registry-python/blob/534d20b616de02f5e1cd73665a02d189645dbeb6/eventregistry/TopicPage.py#L264-L271
def addSourceGroup(self, sourceGroupUri, weight): """ add a list of relevant sources by specifying a whole source group to the topic page @param sourceGroupUri: uri of the source group to add @param weight: importance of the provided list of sources (typically in range 1 - 50) ""...
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add a list of relevant sources by specifying a whole source group to the topic page @param sourceGroupUri: uri of the source group to add @param weight: importance of the provided list of sources (typically in range 1 - 50)
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python
train
63.125
valohai/valohai-yaml
valohai_yaml/objs/step.py
https://github.com/valohai/valohai-yaml/blob/3d2e92381633d84cdba039f6905df34c9633a2e1/valohai_yaml/objs/step.py#L92-L118
def build_command(self, parameter_values, command=None): """ Build the command for this step using the given parameter values. Even if the original configuration only declared a single `command`, this function will return a list of shell commands. It is the caller's responsibil...
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Build the command for this step using the given parameter values. Even if the original configuration only declared a single `command`, this function will return a list of shell commands. It is the caller's responsibility to concatenate them, likely using the semicolon or double ampersa...
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python
train
44.481481
ckoepp/TwitterSearch
TwitterSearch/TwitterSearch.py
https://github.com/ckoepp/TwitterSearch/blob/627b9f519d49faf6b83859717f9082b3b2622aaf/TwitterSearch/TwitterSearch.py#L151-L170
def authenticate(self, verify=True): """ Creates an authenticated and internal oauth2 handler needed for \ queries to Twitter and verifies credentials if needed. If ``verify`` \ is true, it also checks if the user credentials are valid. \ The **default** value is *True* :param...
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Creates an authenticated and internal oauth2 handler needed for \ queries to Twitter and verifies credentials if needed. If ``verify`` \ is true, it also checks if the user credentials are valid. \ The **default** value is *True* :param verify: boolean variable to \ directly c...
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python
train
45.35
tensorflow/tensor2tensor
tensor2tensor/layers/common_layers.py
https://github.com/tensorflow/tensor2tensor/blob/272500b6efe353aeb638d2745ed56e519462ca31/tensor2tensor/layers/common_layers.py#L2322-L2386
def sru(x, num_layers=2, activation=None, initial_state=None, name=None, reuse=None): """SRU cell as in https://arxiv.org/abs/1709.02755. As defined in the paper: (1) x'_t = W x_t (2) f_t = sigmoid(Wf x_t + bf) (3) r_t = sigmoid(Wr x_t + br) (4) c_t = f_t * c_{t-1} +...
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SRU cell as in https://arxiv.org/abs/1709.02755. As defined in the paper: (1) x'_t = W x_t (2) f_t = sigmoid(Wf x_t + bf) (3) r_t = sigmoid(Wr x_t + br) (4) c_t = f_t * c_{t-1} + (1 - f_t) * x'_t (5) h_t = r_t * activation(c_t) + (1 - r_t) * x_t This version uses functional ops to be faster on GPUs with...
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python
train
38.384615
learningequality/morango
morango/signals.py
https://github.com/learningequality/morango/blob/c3ec2554b026f65ac5f0fc5c9d439277fbac14f9/morango/signals.py#L8-L14
def add_to_deleted_models(sender, instance=None, *args, **kwargs): """ Whenever a model is deleted, we record its ID in a separate model for tracking purposes. During serialization, we will mark the model as deleted in the store. """ if issubclass(sender, SyncableModel): instance._update_del...
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Whenever a model is deleted, we record its ID in a separate model for tracking purposes. During serialization, we will mark the model as deleted in the store.
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python
valid
46.714286
inveniosoftware/invenio-access
invenio_access/ext.py
https://github.com/inveniosoftware/invenio-access/blob/3b033a4bdc110eb2f7e9f08f0744a780884bfc80/invenio_access/ext.py#L82-L93
def delete_action_cache(self, action_key): """Delete action needs and excludes from cache. .. note:: It returns the action if a cache system is defined. :param action_key: The unique action name. """ if self.cache: self.cache.delete( self.app.config[...
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Delete action needs and excludes from cache. .. note:: It returns the action if a cache system is defined. :param action_key: The unique action name.
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python
train
31.75
saltstack/salt
salt/modules/zookeeper.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/zookeeper.py#L428-L474
def set_acls(path, acls, version=-1, profile=None, hosts=None, scheme=None, username=None, password=None, default_acl=None): ''' Set acls on a znode path path to znode acls list of acl dictionaries to set on the znode version only set acls if version matches (...
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Set acls on a znode path path to znode acls list of acl dictionaries to set on the znode version only set acls if version matches (Default: -1 (always matches)) profile Configured Zookeeper profile to authenticate with (Default: None) hosts Lists of Zooke...
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python
train
29.659574
pypa/pipenv
pipenv/patched/notpip/_vendor/lockfile/pidlockfile.py
https://github.com/pypa/pipenv/blob/cae8d76c210b9777e90aab76e9c4b0e53bb19cde/pipenv/patched/notpip/_vendor/lockfile/pidlockfile.py#L176-L190
def remove_existing_pidfile(pidfile_path): """ Remove the named PID file if it exists. Removing a PID file that doesn't already exist puts us in the desired state, so we ignore the condition if the file does not exist. """ try: os.remove(pidfile_path) except OSError...
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Remove the named PID file if it exists. Removing a PID file that doesn't already exist puts us in the desired state, so we ignore the condition if the file does not exist.
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python
train
26.733333
python-diamond/Diamond
src/diamond/collector.py
https://github.com/python-diamond/Diamond/blob/0f3eb04327d6d3ed5e53a9967d6c9d2c09714a47/src/diamond/collector.py#L544-L553
def get_default_config(self): """ Returns the default collector settings """ config = super(ProcessCollector, self).get_default_config() config.update({ 'use_sudo': False, 'sudo_cmd': self.find_binary('/usr/bin/sudo'), }) return con...
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Returns the default collector settings
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python
train
31.4
hannes-brt/hebel
hebel/layers/hidden_layer.py
https://github.com/hannes-brt/hebel/blob/1e2c3a9309c2646103901b26a55be4e312dd5005/hebel/layers/hidden_layer.py#L264-L323
def backprop(self, input_data, df_output, cache=None): """ Backpropagate through the hidden layer **Parameters:** input_data : ``GPUArray`` Input data to compute activations for. df_output : ``GPUArray`` Gradients with respect to the activations of this layer ...
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Backpropagate through the hidden layer **Parameters:** input_data : ``GPUArray`` Input data to compute activations for. df_output : ``GPUArray`` Gradients with respect to the activations of this layer (received from the layer above). cache : list o...
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python
train
31.5
Microsoft/nni
src/sdk/pynni/nni/networkmorphism_tuner/layer_transformer.py
https://github.com/Microsoft/nni/blob/c7cc8db32da8d2ec77a382a55089f4e17247ce41/src/sdk/pynni/nni/networkmorphism_tuner/layer_transformer.py#L142-L166
def wider_next_conv(layer, start_dim, total_dim, n_add, weighted=True): '''wider next conv layer. ''' n_dim = get_n_dim(layer) if not weighted: return get_conv_class(n_dim)(layer.input_channel + n_add, layer.filters, kerne...
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wider next conv layer.
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python
train
45
siemens/django-dingos
dingos/models.py
https://github.com/siemens/django-dingos/blob/7154f75b06d2538568e2f2455a76f3d0db0b7d70/dingos/models.py#L1496-L1508
def set_name(self,name=None): """ Set the name of the object. If no name is given, the name is extracted via the extract_name method. """ if name: self.name = name[:254] else: self.name = self.extract_name()[:254] self.save() retu...
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Set the name of the object. If no name is given, the name is extracted via the extract_name method.
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python
train
24.615385
aliyun/aliyun-odps-python-sdk
odps/df/expr/strings.py
https://github.com/aliyun/aliyun-odps-python-sdk/blob/4b0de18f5864386df6068f26f026e62f932c41e4/odps/df/expr/strings.py#L576-L597
def _pad(expr, width, side='left', fillchar=' '): """ Pad strings in the sequence or scalar with an additional character to specified side. :param expr: :param width: Minimum width of resulting string; additional characters will be filled with spaces :param side: {‘left’, ‘right’, ‘both’}, default ...
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Pad strings in the sequence or scalar with an additional character to specified side. :param expr: :param width: Minimum width of resulting string; additional characters will be filled with spaces :param side: {‘left’, ‘right’, ‘both’}, default ‘left’ :param fillchar: Additional character for filling, ...
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python
train
38.636364
raphaelm/django-hierarkey
hierarkey/proxy.py
https://github.com/raphaelm/django-hierarkey/blob/3ca822f94fa633c9a6d5abe9c80cb1551299ae46/hierarkey/proxy.py#L191-L207
def set(self, key: str, value: Any) -> None: """ Stores a setting to the database of its object. The write to the database is performed immediately and the cache in the cache backend is flushed. The cache within this object will be updated correctly. """ wc = se...
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Stores a setting to the database of its object. The write to the database is performed immediately and the cache in the cache backend is flushed. The cache within this object will be updated correctly.
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python
train
34.529412
ska-sa/katcp-python
katcp/client.py
https://github.com/ska-sa/katcp-python/blob/9127c826a1d030c53b84d0e95743e20e5c5ea153/katcp/client.py#L1199-L1240
def future_request(self, msg, timeout=None, use_mid=None): """Send a request messsage, with future replies. Parameters ---------- msg : Message object The request Message to send. timeout : float in seconds How long to wait for a reply. The default is the...
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python
train
29.833333
ldo/dbussy
dbussy.py
https://github.com/ldo/dbussy/blob/59e4fbe8b8111ceead884e50d1973901a0a2d240/dbussy.py#L5539-L5545
def signature_validate(signature, error = None) : "is signature a valid sequence of zero or more complete types." error, my_error = _get_error(error) result = dbus.dbus_signature_validate(signature.encode(), error._dbobj) != 0 my_error.raise_if_set() return \ result
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is signature a valid sequence of zero or more complete types.
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python
train
41.142857
JdeRobot/base
src/drivers/MAVLinkServer/MAVProxy/pymavlink/mavextra.py
https://github.com/JdeRobot/base/blob/303b18992785b2fe802212f2d758a60873007f1f/src/drivers/MAVLinkServer/MAVProxy/pymavlink/mavextra.py#L170-L178
def average(var, key, N): '''average over N points''' global average_data if not key in average_data: average_data[key] = [var]*N return var average_data[key].pop(0) average_data[key].append(var) return sum(average_data[key])/N
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average over N points
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python
train
28.777778
spyder-ide/spyder
spyder/py3compat.py
https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/py3compat.py#L150-L160
def to_binary_string(obj, encoding=None): """Convert `obj` to binary string (bytes in Python 3, str in Python 2)""" if PY2: # Python 2 if encoding is None: return str(obj) else: return obj.encode(encoding) else: # Python 3 return byte...
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Convert `obj` to binary string (bytes in Python 3, str in Python 2)
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python
train
32.636364
assemblerflow/flowcraft
flowcraft/generator/inspect.py
https://github.com/assemblerflow/flowcraft/blob/fc3f4bddded1efc76006600016dc71a06dd908c0/flowcraft/generator/inspect.py#L1533-L1550
def _get_run_hash(self): """Gets the hash of the nextflow file""" # Get name and path of the pipeline from the log file pipeline_path = get_nextflow_filepath(self.log_file) # Get hash from the entire pipeline file pipeline_hash = hashlib.md5() with open(pipeline_path, "...
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Gets the hash of the nextflow file
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python
test
42.777778
msmbuilder/msmbuilder
msmbuilder/example_datasets/brownian1d.py
https://github.com/msmbuilder/msmbuilder/blob/556a93a170782f47be53f4a1e9d740fb1c8272b3/msmbuilder/example_datasets/brownian1d.py#L253-L258
def _brownian_eigs(n_grid, lag_time, grad_potential, xmin, xmax, reflect_bc): """Analytic eigenvalues/eigenvectors for 1D Brownian dynamics """ transmat = _brownian_transmat(n_grid, lag_time, grad_potential, xmin, xmax, reflect_bc) u, lv, rv = _solve_msm_eigensystem(transmat, k=len(transmat) - 1) re...
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Analytic eigenvalues/eigenvectors for 1D Brownian dynamics
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python
train
54.166667
happyleavesaoc/python-voobly
voobly/__init__.py
https://github.com/happyleavesaoc/python-voobly/blob/83b4ab7d630a00459c2a64e55e3ac85c7be38194/voobly/__init__.py#L201-L210
def get_user(session, user_id): """Get user.""" try: user_id = int(user_id) except ValueError: user_id = find_user(session, user_id) resp = _make_request(session, USER_URL, user_id) if not resp: raise VooblyError('user id not found') return resp[0]
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Get user.
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python
train
28.7
JNRowe/jnrbase
jnrbase/template.py
https://github.com/JNRowe/jnrbase/blob/ae505ef69a9feb739b5f4e62c5a8e6533104d3ea/jnrbase/template.py#L145-L162
def setup(__pkg: str) -> jinja2.Environment: """Configure a new Jinja environment with our filters. Args: __pkg: Package name to use as base for templates searches Returns: Configured Jinja environment """ dirs = [path.join(d, 'templates') for d in xdg_basedir.get_data_d...
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Configure a new Jinja environment with our filters. Args: __pkg: Package name to use as base for templates searches Returns: Configured Jinja environment
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python
train
33.722222
cltl/KafNafParserPy
KafNafParserPy/feature_extractor/constituency.py
https://github.com/cltl/KafNafParserPy/blob/9bc32e803c176404b255ba317479b8780ed5f569/KafNafParserPy/feature_extractor/constituency.py#L137-L173
def get_path_from_to(self,from_tid, to_tid): """ This function returns the path (in terms of phrase types) from one term to another @type from_tid: string @param from_tid: one term id @type to_tid: string @param to_tid: another term id @rtype: list @return...
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This function returns the path (in terms of phrase types) from one term to another @type from_tid: string @param from_tid: one term id @type to_tid: string @param to_tid: another term id @rtype: list @return: the path, list of phrase types
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python
train
35.567568
Bonsanto/polygon-geohasher
polygon_geohasher/polygon_geohasher.py
https://github.com/Bonsanto/polygon-geohasher/blob/63f27f41ea3e9d8fda7872d86217719286037c11/polygon_geohasher/polygon_geohasher.py#L23-L62
def polygon_to_geohashes(polygon, precision, inner=True): """ :param polygon: shapely polygon. :param precision: int. Geohashes' precision that form resulting polygon. :param inner: bool, default 'True'. If false, geohashes that are completely outside from the polygon are ignored. :return: set. Set ...
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:param polygon: shapely polygon. :param precision: int. Geohashes' precision that form resulting polygon. :param inner: bool, default 'True'. If false, geohashes that are completely outside from the polygon are ignored. :return: set. Set of geohashes that form the polygon.
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python
train
41.45
CivicSpleen/ambry
ambry/orm/__init__.py
https://github.com/CivicSpleen/ambry/blob/d7f2be4bf1f7ffd086f3fadd4fcae60c32473e42/ambry/orm/__init__.py#L74-L89
def table_convert_geometry(metadata, table_name): """Get table metadata from the database.""" from sqlalchemy import Table from ..orm import Geometry table = Table(table_name, metadata, autoload=True) for c in table.columns: # HACK! Sqlalchemy sees spatialte GEOMETRY types # as NU...
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Get table metadata from the database.
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python
train
25.9375
estnltk/estnltk
estnltk/syntax/syntax_preprocessing.py
https://github.com/estnltk/estnltk/blob/28ae334a68a0673072febc318635f04da0dcc54a/estnltk/syntax/syntax_preprocessing.py#L954-L960
def process_Text( self, text, **kwargs ): ''' Executes the preprocessing pipeline on estnltk's Text object. Returns a list: lines of analyses in the VISL CG3 input format; ''' mrf_lines = convert_Text_to_mrf( text ) return self.process_mrf_lines( mrf_lines, **kwargs )
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Executes the preprocessing pipeline on estnltk's Text object. Returns a list: lines of analyses in the VISL CG3 input format;
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python
train
44
pandeylab/pythomics
pythomics/proteomics/parsers.py
https://github.com/pandeylab/pythomics/blob/ab0a5651a2e02a25def4d277b35fa09d1631bfcb/pythomics/proteomics/parsers.py#L1490-L1526
def getScans(self, modifications=False, fdr=True): """ get a random scan """ if fdr: sql = self.base_sql+"WHERE p.ConfidenceLevel >= {} and p.SearchEngineRank <= {} {}".format(self.clvl, self.srank, self.extra) try: self.cur.execute(sql) ...
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get a random scan
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python
train
39.162162
programa-stic/barf-project
barf/core/reil/builder.py
https://github.com/programa-stic/barf-project/blob/18ed9e5eace55f7bf6015ec57f037c364099021c/barf/core/reil/builder.py#L122-L125
def gen_stm(src, dst): """Return a STM instruction. """ return ReilBuilder.build(ReilMnemonic.STM, src, ReilEmptyOperand(), dst)
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Return a STM instruction.
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python
train
37.25
angr/angr
angr/analyses/cfg/cfg_base.py
https://github.com/angr/angr/blob/4e2f97d56af5419ee73bdb30482c8dd8ff5f3e40/angr/analyses/cfg/cfg_base.py#L2120-L2143
def _process_unresolved_indirect_jumps(self): """ Resolve all unresolved indirect jumps found in previous scanning. Currently we support resolving the following types of indirect jumps: - Ijk_Call: indirect calls where the function address is passed in from a proceeding basic block ...
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Resolve all unresolved indirect jumps found in previous scanning. Currently we support resolving the following types of indirect jumps: - Ijk_Call: indirect calls where the function address is passed in from a proceeding basic block - Ijk_Boring: jump tables - For an up-to-date list, se...
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python
train
39.333333
PyCQA/astroid
astroid/scoped_nodes.py
https://github.com/PyCQA/astroid/blob/e0a298df55b15abcb77c2a93253f5ab7be52d0fb/astroid/scoped_nodes.py#L145-L156
def qname(self): """Get the 'qualified' name of the node. For example: module.name, module.class.name ... :returns: The qualified name. :rtype: str """ # pylint: disable=no-member; github.com/pycqa/astroid/issues/278 if self.parent is None: return se...
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Get the 'qualified' name of the node. For example: module.name, module.class.name ... :returns: The qualified name. :rtype: str
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python
train
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mcs07/ChemDataExtractor
chemdataextractor/cli/chemdner.py
https://github.com/mcs07/ChemDataExtractor/blob/349a3bea965f2073141d62043b89319222e46af1/chemdataextractor/cli/chemdner.py#L47-L67
def prepare_tokens(ctx, input, annotations, tout, lout): """Prepare tokenized and tagged corpus file from those supplied by CHEMDNER.""" click.echo('chemdataextractor.chemdner.prepare_tokens') # Collect the annotations into a dict anndict = defaultdict(list) for line in annotations: pmid, ta...
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Prepare tokenized and tagged corpus file from those supplied by CHEMDNER.
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python
train
54.809524
NICTA/revrand
revrand/glm.py
https://github.com/NICTA/revrand/blob/4c1881b6c1772d2b988518e49dde954f165acfb6/revrand/glm.py#L349-L418
def predict_moments(self, X, nsamples=200, likelihood_args=()): r""" Predictive moments, in particular mean and variance, of a Bayesian GLM. This function uses Monte-Carlo sampling to evaluate the predictive mean and variance of a Bayesian GLM. The exact expressions evaluated are, ...
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r""" Predictive moments, in particular mean and variance, of a Bayesian GLM. This function uses Monte-Carlo sampling to evaluate the predictive mean and variance of a Bayesian GLM. The exact expressions evaluated are, .. math :: \mathbb{E}[y^* | \mathbf{x^*}, \mathbf{X}, y...
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python
train
43.428571
Calysto/calysto
calysto/ai/conx.py
https://github.com/Calysto/calysto/blob/20813c0f48096317aa775d03a5c6b20f12fafc93/calysto/ai/conx.py#L372-L376
def getCorrect(self, tolerance): """ Returns the number of nodes within tolerance of the target. """ return Numeric.add.reduce(Numeric.fabs(self.target - self.activation) < tolerance)
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Returns the number of nodes within tolerance of the target.
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python
train
42.2
DataDog/integrations-core
tokumx/datadog_checks/tokumx/vendor/pymongo/pool.py
https://github.com/DataDog/integrations-core/blob/ebd41c873cf9f97a8c51bf9459bc6a7536af8acd/tokumx/datadog_checks/tokumx/vendor/pymongo/pool.py#L533-L549
def write_command(self, request_id, msg): """Send "insert" etc. command, returning response as a dict. Can raise ConnectionFailure or OperationFailure. :Parameters: - `request_id`: an int. - `msg`: bytes, the command message. """ self.send_message(msg, 0) ...
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Send "insert" etc. command, returning response as a dict. Can raise ConnectionFailure or OperationFailure. :Parameters: - `request_id`: an int. - `msg`: bytes, the command message.
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python
train
34.764706
05bit/peewee-async
peewee_async.py
https://github.com/05bit/peewee-async/blob/d15f4629da1d9975da4ec37306188e68d288c862/peewee_async.py#L558-L577
async def select(query): """Perform SELECT query asynchronously. """ assert isinstance(query, peewee.SelectQuery),\ ("Error, trying to run select coroutine" "with wrong query class %s" % str(query)) cursor = await _execute_query_async(query) result = AsyncQueryWrapper(cursor=curso...
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Perform SELECT query asynchronously.
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python
train
24.2
saltstack/salt
salt/modules/jboss7.py
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/jboss7.py#L138-L174
def create_datasource(jboss_config, name, datasource_properties, profile=None): ''' Create datasource in running jboss instance jboss_config Configuration dictionary with properties specified above. name Datasource name datasource_properties A dictionary of datasource proper...
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Create datasource in running jboss instance jboss_config Configuration dictionary with properties specified above. name Datasource name datasource_properties A dictionary of datasource properties to be created: - driver-name: mysql - connection-url: 'jdbc:mysql:/...
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python
train
48.486486
NuGrid/NuGridPy
nugridpy/mesa.py
https://github.com/NuGrid/NuGridPy/blob/eee8047446e398be77362d82c1d8b3310054fab0/nugridpy/mesa.py#L898-L926
def _read_starlog(self): """ read history.data or star.log file again""" sldir = self.sldir slname = self.slname slaname = slname+'sa' if not os.path.exists(sldir+'/'+slaname): print('No '+self.slname+'sa file found, create new one from '+self.slname) ...
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read history.data or star.log file again
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python
train
33.241379
tensorpack/tensorpack
examples/SimilarityLearning/mnist-embeddings.py
https://github.com/tensorpack/tensorpack/blob/d7a13cb74c9066bc791d7aafc3b744b60ee79a9f/examples/SimilarityLearning/mnist-embeddings.py#L25-L65
def contrastive_loss(left, right, y, margin, extra=False, scope="constrastive_loss"): r"""Loss for Siamese networks as described in the paper: `Learning a Similarity Metric Discriminatively, with Application to Face Verification <http://yann.lecun.com/exdb/publis/pdf/chopra-05.pdf>`_ by Chopra et al. ....
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r"""Loss for Siamese networks as described in the paper: `Learning a Similarity Metric Discriminatively, with Application to Face Verification <http://yann.lecun.com/exdb/publis/pdf/chopra-05.pdf>`_ by Chopra et al. .. math:: \frac{1}{2} [y \cdot d^2 + (1-y) \cdot \max(0, m - d)^2], d = \Vert l - r...
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python
train
44.268293
coleifer/walrus
walrus/fts.py
https://github.com/coleifer/walrus/blob/82bf15a6613487b5b5fefeb488f186d7e0106547/walrus/fts.py#L65-L82
def remove(self, key, preserve_data=False): """ :param key: Document unique identifier. Remove the document from the search index. """ if self.members.remove(key) != 1: raise KeyError('Document with key "%s" not found.' % key) document_hash = self._get_hash(k...
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:param key: Document unique identifier. Remove the document from the search index.
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python
train
34.222222
nefarioustim/parker
parker/fileops.py
https://github.com/nefarioustim/parker/blob/ccc1de1ac6bfb5e0a8cfa4fdebb2f38f2ee027d6/parker/fileops.py#L32-L40
def dump_string_to_file(string, filepath): """Dump @string as a line to @filepath.""" create_dirs( os.path.dirname(filepath) ) with open(filepath, 'a') as outfile: outfile.write(string) outfile.write('\n')
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Dump @string as a line to @filepath.
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python
train
26.444444
isogeo/isogeo-api-py-minsdk
isogeo_pysdk/checker.py
https://github.com/isogeo/isogeo-api-py-minsdk/blob/57a604be92c7767b26abd247012cc1a584b386a0/isogeo_pysdk/checker.py#L156-L173
def check_api_response(self, response): """Check API response and raise exceptions if needed. :param requests.models.Response response: request response to check """ # check response if response.status_code == 200: return True elif response.status_code >= 400...
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Check API response and raise exceptions if needed. :param requests.models.Response response: request response to check
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python
train
34.944444
mottosso/be
be/vendor/requests/utils.py
https://github.com/mottosso/be/blob/0f3d4f3597c71223f616d78c6d9b2c8dffcd8a71/be/vendor/requests/utils.py#L676-L692
def to_native_string(string, encoding='ascii'): """ Given a string object, regardless of type, returns a representation of that string in the native string type, encoding and decoding where necessary. This assumes ASCII unless told otherwise. """ out = None if isinstance(string, builtin_str...
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python
train
27.647059
googlecolab/jupyter_http_over_ws
jupyter_http_over_ws/handlers.py
https://github.com/googlecolab/jupyter_http_over_ws/blob/21fe278cae6fca4e6c92f92d6d786fae8fdea9b1/jupyter_http_over_ws/handlers.py#L261-L288
def streaming_callback(self, body_part): """Handles a streaming chunk of the response. The streaming_response callback gives no indication about whether the received chunk is the last in the stream. The "last_response" instance variable allows us to keep track of the last received chunk of the resp...
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Handles a streaming chunk of the response. The streaming_response callback gives no indication about whether the received chunk is the last in the stream. The "last_response" instance variable allows us to keep track of the last received chunk of the response. Each time this is called, the previous chu...
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python
train
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ibis-project/ibis
ibis/expr/api.py
https://github.com/ibis-project/ibis/blob/1e39a5fd9ef088b45c155e8a5f541767ee8ef2e7/ibis/expr/api.py#L1300-L1330
def quantile(arg, quantile, interpolation='linear'): """ Return value at the given quantile, a la numpy.percentile. Parameters ---------- quantile : float/int or array-like 0 <= quantile <= 1, the quantile(s) to compute interpolation : {'linear', 'lower', 'higher', 'midpoint', 'nearest'...
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Return value at the given quantile, a la numpy.percentile. Parameters ---------- quantile : float/int or array-like 0 <= quantile <= 1, the quantile(s) to compute interpolation : {'linear', 'lower', 'higher', 'midpoint', 'nearest'} This optional parameter specifies the interpolation me...
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python
train
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mapbox/mapbox-cli-py
mapboxcli/scripts/mapmatching.py
https://github.com/mapbox/mapbox-cli-py/blob/b75544a2f83a4fda79d78b5673058e16e64a4f6d/mapboxcli/scripts/mapmatching.py#L15-L43
def match(ctx, features, profile, gps_precision): """Mapbox Map Matching API lets you use snap your GPS traces to the OpenStreetMap road and path network. $ mapbox mapmatching trace.geojson An access token is required, see `mapbox --help`. """ access_token = (ctx.obj and ctx.obj.get('access_token'))...
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python
train
31.689655
aetros/aetros-cli
aetros/client.py
https://github.com/aetros/aetros-cli/blob/a2a1f38d6af1660e1e2680c7d413ec2aef45faab/aetros/client.py#L712-L740
def wait_for_at_least_one_message(self, channel): """ Reads until we receive at least one message we can unpack. Return all found messages. """ unpacker = msgpack.Unpacker(encoding='utf-8') while True: try: start = time.time() chunk =...
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Reads until we receive at least one message we can unpack. Return all found messages.
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python
train
35.793103
googleapis/oauth2client
oauth2client/contrib/keyring_storage.py
https://github.com/googleapis/oauth2client/blob/50d20532a748f18e53f7d24ccbe6647132c979a9/oauth2client/contrib/keyring_storage.py#L62-L78
def locked_get(self): """Retrieve Credential from file. Returns: oauth2client.client.Credentials """ credentials = None content = keyring.get_password(self._service_name, self._user_name) if content is not None: try: credentials =...
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Retrieve Credential from file. Returns: oauth2client.client.Credentials
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python
valid
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iotile/coretools
iotilebuild/iotile/build/config/scons-local-3.0.1/SCons/Tool/m4.py
https://github.com/iotile/coretools/blob/2d794f5f1346b841b0dcd16c9d284e9bf2f3c6ec/iotilebuild/iotile/build/config/scons-local-3.0.1/SCons/Tool/m4.py#L40-L54
def generate(env): """Add Builders and construction variables for m4 to an Environment.""" M4Action = SCons.Action.Action('$M4COM', '$M4COMSTR') bld = SCons.Builder.Builder(action = M4Action, src_suffix = '.m4') env['BUILDERS']['M4'] = bld # .m4 files might include other files, and it would be pre...
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Add Builders and construction variables for m4 to an Environment.
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python
train
45.2
vertexproject/synapse
synapse/lib/module.py
https://github.com/vertexproject/synapse/blob/22e67c5a8f6d7caddbcf34b39ab1bd2d6c4a6e0b/synapse/lib/module.py#L93-L107
def getModPath(self, *paths): ''' Construct a path relative to this module's working directory. Args: *paths: A list of path strings Notes: This creates the module specific directory if it does not exist. Returns: (str): The full path (or No...
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Construct a path relative to this module's working directory. Args: *paths: A list of path strings Notes: This creates the module specific directory if it does not exist. Returns: (str): The full path (or None if no cortex dir is configured).
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python
train
28.733333
ARMmbed/mbed-cloud-sdk-python
src/mbed_cloud/_backends/enrollment/models/enrollment_id.py
https://github.com/ARMmbed/mbed-cloud-sdk-python/blob/c0af86fb2cdd4dc7ed26f236139241067d293509/src/mbed_cloud/_backends/enrollment/models/enrollment_id.py#L61-L74
def enrollment_identity(self, enrollment_identity): """ Sets the enrollment_identity of this EnrollmentId. Enrollment identity. :param enrollment_identity: The enrollment_identity of this EnrollmentId. :type: str """ if enrollment_identity is None: ra...
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Sets the enrollment_identity of this EnrollmentId. Enrollment identity. :param enrollment_identity: The enrollment_identity of this EnrollmentId. :type: str
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python
train
48.785714
mahmoudimus/nose-timer
nosetimer/plugin.py
https://github.com/mahmoudimus/nose-timer/blob/3d8ff21ce3a68efd6cd018ea67c32f1da27ea3f9/nosetimer/plugin.py#L236-L241
def _colored_time(self, time_taken, color=None): """Get formatted and colored string for a given time taken.""" if self.timer_no_color: return "{0:0.4f}s".format(time_taken) return _colorize("{0:0.4f}s".format(time_taken), color)
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Get formatted and colored string for a given time taken.
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python
train
43.5
chartbeat-labs/swailing
swailing/logger.py
https://github.com/chartbeat-labs/swailing/blob/d55e0dd7af59a2ba93f7c9c46ff56f6a4080b222/swailing/logger.py#L103-L106
def log(self, level, msg=None, *args, **kwargs): """Writes log out at any arbitray level.""" return self._log(level, msg, args, kwargs)
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Writes log out at any arbitray level.
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python
train
37.25
ewels/MultiQC
multiqc/modules/deeptools/estimateReadFiltering.py
https://github.com/ewels/MultiQC/blob/2037d6322b2554146a74efbf869156ad20d4c4ec/multiqc/modules/deeptools/estimateReadFiltering.py#L16-L129
def parse_estimateReadFiltering(self): """Find estimateReadFiltering output. Only the output from --table is supported.""" self.deeptools_estimateReadFiltering = dict() for f in self.find_log_files('deeptools/estimateReadFiltering'): parsed_data = self.parseEstimateReadFilteringFile(...
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Find estimateReadFiltering output. Only the output from --table is supported.
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python
train
45.219298
petl-developers/petlx
petlx/bio/tabix.py
https://github.com/petl-developers/petlx/blob/54039e30388c7da12407d6b5c3cb865b00436004/petlx/bio/tabix.py#L10-L47
def fromtabix(filename, reference=None, start=None, stop=None, region=None, header=None): """ Extract rows from a tabix indexed file, e.g.:: >>> import petl as etl >>> # activate bio extensions ... import petlx.bio >>> table1 = etl.fromtabix('fixture/test.bed.gz', ...
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Extract rows from a tabix indexed file, e.g.:: >>> import petl as etl >>> # activate bio extensions ... import petlx.bio >>> table1 = etl.fromtabix('fixture/test.bed.gz', ... region='Pf3D7_02_v3') >>> table1 +---------------+----------+----...
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python
train
50.078947
spyder-ide/spyder
spyder/plugins/projects/plugin.py
https://github.com/spyder-ide/spyder/blob/f76836ce1b924bcc4efd3f74f2960d26a4e528e0/spyder/plugins/projects/plugin.py#L478-L484
def is_valid_project(self, path): """Check if a directory is a valid Spyder project""" spy_project_dir = osp.join(path, '.spyproject') if osp.isdir(path) and osp.isdir(spy_project_dir): return True else: return False
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Check if a directory is a valid Spyder project
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python
train
38.857143
elastic/elasticsearch-py
elasticsearch/client/xpack/data_frame.py
https://github.com/elastic/elasticsearch-py/blob/2aab285c8f506f3863cbdaba3c90a685c510ba00/elasticsearch/client/xpack/data_frame.py#L100-L118
def stop_data_frame_transform(self, transform_id, params=None): """ `<https://www.elastic.co/guide/en/elasticsearch/reference/current/stop-data-frame-transform.html>`_ :arg transform_id: The id of the transform to stop :arg timeout: Controls the time to wait until the transform has stop...
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`<https://www.elastic.co/guide/en/elasticsearch/reference/current/stop-data-frame-transform.html>`_ :arg transform_id: The id of the transform to stop :arg timeout: Controls the time to wait until the transform has stopped. Default to 30 seconds :arg wait_for_completion: Whether to ...
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python
train
43.684211
signalfx/signalfx-python
signalfx/rest.py
https://github.com/signalfx/signalfx-python/blob/650eb9a2b301bcc795e4e3a8c031574ade69849d/signalfx/rest.py#L326-L336
def delete_tag(self, tag_name, **kwargs): """delete a tag by name Args: tag_name (string): name of tag to delete """ resp = self._delete(self._u(self._TAG_ENDPOINT_SUFFIX, tag_name), **kwargs) resp.raise_for_status() # successful d...
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delete a tag by name Args: tag_name (string): name of tag to delete
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python
train
34.272727
BerkeleyAutomation/perception
perception/detector.py
https://github.com/BerkeleyAutomation/perception/blob/03d9b37dd6b66896cdfe173905c9413c8c3c5df6/perception/detector.py#L225-L298
def _segment_color(self, color_im, bounding_box, bgmodel, cfg, vis_segmentation=False): """ Re-segments a color image to isolate an object of interest using foreground masking and kmeans """ # read params foreground_mask_tolerance = cfg['foreground_mask_tolerance'] color_seg_rgb_weight =...
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Re-segments a color image to isolate an object of interest using foreground masking and kmeans
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python
train
50.351351
berkeley-cocosci/Wallace
wallace/custom.py
https://github.com/berkeley-cocosci/Wallace/blob/3650c0bc3b0804d0adb1d178c5eba9992babb1b0/wallace/custom.py#L228-L236
def quitter(): """Overide the psiTurk quitter route.""" exp = experiment(session) exp.log("Quitter route was hit.") return Response( dumps({"status": "success"}), status=200, mimetype='application/json')
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Overide the psiTurk quitter route.
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python
train
26.222222
openknowledge-archive/datapackage-registry-py
datapackage_registry/registry.py
https://github.com/openknowledge-archive/datapackage-registry-py/blob/02ba4d1ae6a75d8960abef0ffec3e9ec49ed26f9/datapackage_registry/registry.py#L112-L131
def _load_json_file_or_url(self, json_path_or_url): '''Return the JSON at the local path or URL as a dict This method raises DataPackageRegistryException if there were any errors. ''' try: if os.path.isfile(json_path_or_url): with open(json_path_or_ur...
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Return the JSON at the local path or URL as a dict This method raises DataPackageRegistryException if there were any errors.
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python
train
34.05
nerdvegas/rez
src/rez/vendor/pygraph/mixins/labeling.py
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/vendor/pygraph/mixins/labeling.py#L79-L91
def set_edge_weight(self, edge, wt): """ Set the weight of an edge. @type edge: edge @param edge: One edge. @type wt: number @param wt: Edge weight. """ self.set_edge_properties(edge, weight=wt ) if not self.DIRECTED: self.set_edge_...
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Set the weight of an edge. @type edge: edge @param edge: One edge. @type wt: number @param wt: Edge weight.
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python
train
27
acutesoftware/AIKIF
aikif/programs.py
https://github.com/acutesoftware/AIKIF/blob/fcf1582dc5f884b9a4fa7c6e20e9de9d94d21d03/aikif/programs.py#L127-L137
def get_file_info_web(self, fname, delim='<BR>\n'): """ gathers info on a python program in list and formats as string """ txt = '' f = mod_file.File(fname[0]) txt += '<sup>' + f.name + '</sup>' + delim txt += '<sup>' + fname[1] + '</sup>' + delim txt +=...
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gathers info on a python program in list and formats as string
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python
train
47.090909
tducret/precisionmapper-python
python-flask/swagger_server/models/base_model_.py
https://github.com/tducret/precisionmapper-python/blob/462dcc5bccf6edec780b8b7bc42e8c1d717db942/python-flask/swagger_server/models/base_model_.py#L21-L23
def from_dict(cls: typing.Type[T], dikt) -> T: """Returns the dict as a model""" return util.deserialize_model(dikt, cls)
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Returns the dict as a model
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python
train
45
gwpy/gwpy
gwpy/plot/gps.py
https://github.com/gwpy/gwpy/blob/7a92b917e7dd2d99b15895293a1fa1d66cdb210a/gwpy/plot/gps.py#L118-L147
def set_unit(self, unit): """Set the GPS step scale """ # accept all core time units if unit is None or (isinstance(unit, units.NamedUnit) and unit.physical_type == 'time'): self._unit = unit return # convert float to custom uni...
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Set the GPS step scale
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python
train
37.833333
ricequant/rqalpha
rqalpha/model/instrument.py
https://github.com/ricequant/rqalpha/blob/ac40a62d4e7eca9494b4d0a14f46facf5616820c/rqalpha/model/instrument.py#L140-L149
def industry_code(self): """ [str] 国民经济行业分类代码,具体可参考“Industry列表” (股票专用) """ try: return self.__dict__["industry_code"] except (KeyError, ValueError): raise AttributeError( "Instrument(order_book_id={}) has no attribute 'industry_code' ".form...
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[str] 国民经济行业分类代码,具体可参考“Industry列表” (股票专用)
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python
train
34.7
mikedh/trimesh
trimesh/scene/scene.py
https://github.com/mikedh/trimesh/blob/25e059bf6d4caa74f62ffd58ce4f61a90ee4e518/trimesh/scene/scene.py#L411-L463
def set_camera(self, angles=None, distance=None, center=None, resolution=None, fov=None): """ Create a camera object for self.camera, and add a transform to self.graph for it. If arguments are...
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Create a camera object for self.camera, and add a transform to self.graph for it. If arguments are not passed sane defaults will be figured out which show the mesh roughly centered. Parameters ----------- angles : (3,) float Initial euler angles in radians ...
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python
train
32.301887
jmwri/simplejwt
simplejwt/jwt.py
https://github.com/jmwri/simplejwt/blob/0828eaace0846918d2d202f5a60167a003e88b71/simplejwt/jwt.py#L30-L40
def get_algorithm(alg: str) -> Callable: """ :param alg: The name of the requested `JSON Web Algorithm <https://tools.ietf.org/html/rfc7519#ref-JWA>`_. `RFC7518 <https://tools.ietf.org/html/rfc7518#section-3.2>`_ is related. :type alg: str :return: The requested algorithm. :rtype: Callable :rais...
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:param alg: The name of the requested `JSON Web Algorithm <https://tools.ietf.org/html/rfc7519#ref-JWA>`_. `RFC7518 <https://tools.ietf.org/html/rfc7518#section-3.2>`_ is related. :type alg: str :return: The requested algorithm. :rtype: Callable :raises: ValueError
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python
valid
41.181818
limix/glimix-core
glimix_core/lmm/_lmm.py
https://github.com/limix/glimix-core/blob/cddd0994591d100499cc41c1f480ddd575e7a980/glimix_core/lmm/_lmm.py#L209-L234
def beta_covariance(self): """ Estimates the covariance-matrix of the optimal beta. Returns ------- beta-covariance : ndarray (Xᵀ(s((1-𝛿)K + 𝛿I))⁻¹X)⁻¹. References ---------- .. Rencher, A. C., & Schaalje, G. B. (2008). Linear models in sta...
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Estimates the covariance-matrix of the optimal beta. Returns ------- beta-covariance : ndarray (Xᵀ(s((1-𝛿)K + 𝛿I))⁻¹X)⁻¹. References ---------- .. Rencher, A. C., & Schaalje, G. B. (2008). Linear models in statistics. John Wiley & Sons.
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python
valid
29.538462
rhayes777/PyAutoFit
autofit/mapper/model_mapper.py
https://github.com/rhayes777/PyAutoFit/blob/a9e6144abb08edfc6a6906c4030d7119bf8d3e14/autofit/mapper/model_mapper.py#L193-L202
def prior_prior_model_dict(self): """ Returns ------- prior_prior_model_dict: {Prior: PriorModel} A dictionary mapping priors to associated prior models. Each prior will only have one prior model; if a prior is shared by two prior models then one of those prior mo...
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Returns ------- prior_prior_model_dict: {Prior: PriorModel} A dictionary mapping priors to associated prior models. Each prior will only have one prior model; if a prior is shared by two prior models then one of those prior models will be in this dictionary.
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python
train
49.7
materialsproject/pymatgen
pymatgen/analysis/eos.py
https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/analysis/eos.py#L52-L73
def _initial_guess(self): """ Quadratic fit to get an initial guess for the parameters. Returns: tuple: (e0, b0, b1, v0) """ a, b, c = np.polyfit(self.volumes, self.energies, 2) self.eos_params = [a, b, c] v0 = -b/(2*a) e0 = a*(v0**2) + b*v0 ...
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Quadratic fit to get an initial guess for the parameters. Returns: tuple: (e0, b0, b1, v0)
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python
train
29.181818
nathan-hoad/aiomanhole
aiomanhole/__init__.py
https://github.com/nathan-hoad/aiomanhole/blob/a13394c79e1878cde67aa2637ae5664df468ed04/aiomanhole/__init__.py#L88-L96
def handle_one_command(self): """Process a single command. May have many lines.""" while True: yield from self.write_prompt() codeobj = yield from self.read_command() if codeobj is not None: yield from self.run_command(codeobj)
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Process a single command. May have many lines.
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python
train
32.111111
konstantint/matplotlib-venn
matplotlib_venn/_venn2.py
https://github.com/konstantint/matplotlib-venn/blob/c26796c9925bdac512edf48387452fbd1848c791/matplotlib_venn/_venn2.py#L183-L258
def venn2(subsets, set_labels=('A', 'B'), set_colors=('r', 'g'), alpha=0.4, normalize_to=1.0, ax=None, subset_label_formatter=None): '''Plots a 2-set area-weighted Venn diagram. The subsets parameter can be one of the following: - A list (or a tuple) containing two set objects. - A dict, providing siz...
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Plots a 2-set area-weighted Venn diagram. The subsets parameter can be one of the following: - A list (or a tuple) containing two set objects. - A dict, providing sizes of three diagram regions. The regions are identified via two-letter binary codes ('10', '01', and '11'), hence a valid set could l...
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python
train
50.723684
rigetti/pyquil
pyquil/paulis.py
https://github.com/rigetti/pyquil/blob/ec98e453084b0037d69d8c3245f6822a5422593d/pyquil/paulis.py#L952-L995
def trotterize(first_pauli_term, second_pauli_term, trotter_order=1, trotter_steps=1): """ Create a Quil program that approximates exp( (A + B)t) where A and B are PauliTerm operators. :param PauliTerm first_pauli_term: PauliTerm denoted `A` :param PauliTerm second_pauli_term: PauliT...
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Create a Quil program that approximates exp( (A + B)t) where A and B are PauliTerm operators. :param PauliTerm first_pauli_term: PauliTerm denoted `A` :param PauliTerm second_pauli_term: PauliTerm denoted `B` :param int trotter_order: Optional argument indicating the Suzuki-Trotter ...
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python
train
37.454545
lrq3000/pyFileFixity
pyFileFixity/lib/profilers/visual/pympler/classtracker_stats.py
https://github.com/lrq3000/pyFileFixity/blob/fd5ef23bb13835faf1e3baa773619b86a1cc9bdf/pyFileFixity/lib/profilers/visual/pympler/classtracker_stats.py#L115-L130
def dump_stats(self, fdump, close=True): """ Dump the logged data to a file. The argument `file` can be either a filename or an open file object that requires write access. `close` controls if the file is closed before leaving this method (the default behaviour). """ ...
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Dump the logged data to a file. The argument `file` can be either a filename or an open file object that requires write access. `close` controls if the file is closed before leaving this method (the default behaviour).
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python
train
40.5625
JelleAalbers/multihist
multihist.py
https://github.com/JelleAalbers/multihist/blob/072288277f807e7e388fdf424c3921c80576f3ab/multihist.py#L545-L558
def average(self, axis): """Returns d-1 dimensional histogram of (estimated) mean value of axis NB this is very different from averaging over the axis!!! """ axis = self.get_axis_number(axis) avg_hist = np.ma.average(self.all_axis_bin_centers(axis), ...
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Returns d-1 dimensional histogram of (estimated) mean value of axis NB this is very different from averaging over the axis!!!
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python
train
49.428571
dwavesystems/dwave_networkx
dwave_networkx/generators/chimera.py
https://github.com/dwavesystems/dwave_networkx/blob/9ea1223ddbc7e86db2f90b8b23e250e6642c3d68/dwave_networkx/generators/chimera.py#L401-L418
def ints(self, qlist): """ Converts a sequence of chimera_index node labels into linear_index node labels, preserving order Parameters ---------- qlist : sequence of ints The chimera_index node labels Returns ------- rlist : iterable ...
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Converts a sequence of chimera_index node labels into linear_index node labels, preserving order Parameters ---------- qlist : sequence of ints The chimera_index node labels Returns ------- rlist : iterable of tuples The linear_lindex nod...
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python
train
26.944444
pypa/pipenv
pipenv/vendor/jinja2/lexer.py
https://github.com/pypa/pipenv/blob/cae8d76c210b9777e90aab76e9c4b0e53bb19cde/pipenv/vendor/jinja2/lexer.py#L178-L186
def describe_token_expr(expr): """Like `describe_token` but for token expressions.""" if ':' in expr: type, value = expr.split(':', 1) if type == 'name': return value else: type = expr return _describe_token_type(type)
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Like `describe_token` but for token expressions.
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python
train
29.111111
vtkiorg/vtki
vtki/geometric_objects.py
https://github.com/vtkiorg/vtki/blob/5ccad7ae6d64a03e9594c9c7474c8aab3eb22dd1/vtki/geometric_objects.py#L194-L236
def Plane(center=(0, 0, 0), direction=(0, 0, 1), i_size=1, j_size=1, i_resolution=10, j_resolution=10): """ Create a plane Parameters ---------- center : list or np.ndarray Location of the centroid in [x, y, z] direction : list or np.ndarray Direction cylinder points ...
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Create a plane Parameters ---------- center : list or np.ndarray Location of the centroid in [x, y, z] direction : list or np.ndarray Direction cylinder points to in [x, y, z] i_size : float Size of the plane in the i direction. j_size : float Size of the pla...
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python
train
23.534884
idank/bashlex
bashlex/parser.py
https://github.com/idank/bashlex/blob/800cb7e3c634eaa3c81f8a8648fd7fd4e27050ac/bashlex/parser.py#L15-L28
def p_inputunit(p): '''inputunit : simple_list simple_list_terminator | NEWLINE | error NEWLINE | EOF''' # XXX if p.lexer._parserstate & flags.parser.CMDSUBST: p.lexer._parserstate.add(flags.parser.EOFTOKEN) if isinstance(p[1], ast.node): ...
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inputunit : simple_list simple_list_terminator | NEWLINE | error NEWLINE | EOF
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python
train
32.642857
numenta/nupic
src/nupic/algorithms/fdrutilities.py
https://github.com/numenta/nupic/blob/5922fafffdccc8812e72b3324965ad2f7d4bbdad/src/nupic/algorithms/fdrutilities.py#L65-L94
def generateCoincMatrix(nCoinc=10, length=500, activity=50): """ Generate a coincidence matrix. This is used to generate random inputs to the temporal learner and to compare the predicted output against. It generates a matrix of nCoinc rows, each row has length 'length' and has a total of 'activity' bits on....
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Generate a coincidence matrix. This is used to generate random inputs to the temporal learner and to compare the predicted output against. It generates a matrix of nCoinc rows, each row has length 'length' and has a total of 'activity' bits on. Parameters: ----------------------------------------------- n...
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python
valid
35.2
google/prettytensor
prettytensor/pretty_tensor_image_methods.py
https://github.com/google/prettytensor/blob/75daa0b11252590f548da5647addc0ea610c4c45/prettytensor/pretty_tensor_image_methods.py#L75-L103
def max_pool(input_layer, kernel, stride, edges=PAD_SAME, name=PROVIDED): """Performs max pooling. `kernel` is the patch that will be pooled and it describes the pooling along each of the 4 dimensions. `stride` is how big to take each step. Because more often than not, pooling is only done on the width and...
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Performs max pooling. `kernel` is the patch that will be pooled and it describes the pooling along each of the 4 dimensions. `stride` is how big to take each step. Because more often than not, pooling is only done on the width and height of the image, the following shorthands are supported: * scalar (e.g....
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python
train
43.965517
cloud9ers/gurumate
environment/lib/python2.7/site-packages/IPython/frontend/qt/console/completion_lexer.py
https://github.com/cloud9ers/gurumate/blob/075dc74d1ee62a8c6b7a8bf2b271364f01629d1e/environment/lib/python2.7/site-packages/IPython/frontend/qt/console/completion_lexer.py#L20-L61
def get_context(self, string): """ Assuming the cursor is at the end of the specified string, get the context (a list of names) for the symbol at cursor position. """ context = [] reversed_tokens = list(self._lexer.get_tokens(string)) reversed_tokens.reverse() ...
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Assuming the cursor is at the end of the specified string, get the context (a list of names) for the symbol at cursor position.
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python
test
35.97619
vecnet/vecnet.openmalaria
vecnet/openmalaria/scenario/interventions.py
https://github.com/vecnet/vecnet.openmalaria/blob/795bc9d1b81a6c664f14879edda7a7c41188e95a/vecnet/openmalaria/scenario/interventions.py#L989-L1000
def anopheles(self): """ :rtype: Anopheles """ list_of_anopheles = [] desc = self.et.find("description") if desc is not None: for anopheles in desc.findall("anopheles"): list_of_anopheles.append(Anopheles(anopheles)) return list_of_an...
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:rtype: Anopheles
[ ":", "rtype", ":", "Anopheles" ]
python
train
26.333333
frnmst/md-toc
md_toc/cli.py
https://github.com/frnmst/md-toc/blob/86d2002ecf52fa9e1e5316a31f7eb7d549cb0830/md_toc/cli.py#L85-L229
def create_parser(self): """Create the CLI parser.""" parser = argparse.ArgumentParser( description=PROGRAM_DESCRIPTION, formatter_class=argparse.RawDescriptionHelpFormatter, epilog=textwrap.dedent(PROGRAM_EPILOG)) parser.add_argument( 'filename',...
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Create the CLI parser.
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python
train
40.606897
planetlabs/planet-client-python
planet/scripts/cli.py
https://github.com/planetlabs/planet-client-python/blob/1c62ce7d416819951dddee0c22068fef6d40b027/planet/scripts/cli.py#L66-L75
def cli(context, verbose, api_key, base_url, workers): '''Planet API Client''' configure_logging(verbose) client_params.clear() client_params['api_key'] = api_key client_params['workers'] = workers if base_url: client_params['base_url'] = base_url
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Planet API Client
[ "Planet", "API", "Client" ]
python
train
27.2
google/apitools
apitools/base/py/base_api.py
https://github.com/google/apitools/blob/f3745a7ea535aa0e88b0650c16479b696d6fd446/apitools/base/py/base_api.py#L658-L687
def PrepareHttpRequest(self, method_config, request, global_params=None, upload=None, upload_config=None, download=None): """Prepares an HTTP request to be sent.""" request_type = _LoadClass( method_config.request_type_name, self.__client.MESSAGES_MODULE) u...
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Prepares an HTTP request to be sent.
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python
train
48.766667
tnkteja/myhelp
virtualEnvironment/lib/python2.7/site-packages/twine/utils.py
https://github.com/tnkteja/myhelp/blob/fb3a4809d448ad14d5b2e6ddf2e7e89ad52b71cb/virtualEnvironment/lib/python2.7/site-packages/twine/utils.py#L89-L114
def get_userpass_value(cli_value, config, key, prompt_strategy): """Gets the username / password from config. Uses the following rules: 1. If it is specified on the cli (`cli_value`), use that. 2. If `config[key]` is specified, use that. 3. Otherwise prompt using `prompt_strategy`. :param cli...
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Gets the username / password from config. Uses the following rules: 1. If it is specified on the cli (`cli_value`), use that. 2. If `config[key]` is specified, use that. 3. Otherwise prompt using `prompt_strategy`. :param cli_value: The value supplied from the command line or `None`. :type cl...
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python
test
33.038462
django-parler/django-parler
parler/utils/views.py
https://github.com/django-parler/django-parler/blob/11ae4af5e8faddb74c69c848870122df4006a54e/parler/utils/views.py#L31-L72
def get_language_tabs(request, current_language, available_languages, css_class=None): """ Determine the language tabs to show. """ tabs = TabsList(css_class=css_class) get = request.GET.copy() # QueryDict object tab_languages = [] site_id = getattr(settings, 'SITE_ID', None) for lang_...
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Determine the language tabs to show.
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python
train
33.5
StorjOld/heartbeat
heartbeat/OneHash/OneHash.py
https://github.com/StorjOld/heartbeat/blob/4d54f2011f1e9f688073d4347bc51bb7bd682718/heartbeat/OneHash/OneHash.py#L92-L110
def generate_challenges(self, num, root_seed): """ Generate the specified number of hash challenges. :param num: The number of hash challenges we want to generate. :param root_seed: Some value that we use to generate our seeds from. """ # Generate a series of seeds seed...
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Generate the specified number of hash challenges. :param num: The number of hash challenges we want to generate. :param root_seed: Some value that we use to generate our seeds from.
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python
train
39.473684
StackStorm/pybind
pybind/nos/v6_0_2f/rbridge_id/router/router_bgp/address_family/ipv4/ipv4_unicast/__init__.py
https://github.com/StackStorm/pybind/blob/44c467e71b2b425be63867aba6e6fa28b2cfe7fb/pybind/nos/v6_0_2f/rbridge_id/router/router_bgp/address_family/ipv4/ipv4_unicast/__init__.py#L127-L148
def _set_af_vrf(self, v, load=False): """ Setter method for af_vrf, mapped from YANG variable /rbridge_id/router/router_bgp/address_family/ipv4/ipv4_unicast/af_vrf (list) If this variable is read-only (config: false) in the source YANG file, then _set_af_vrf is considered as a private method. Backen...
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Setter method for af_vrf, mapped from YANG variable /rbridge_id/router/router_bgp/address_family/ipv4/ipv4_unicast/af_vrf (list) If this variable is read-only (config: false) in the source YANG file, then _set_af_vrf is considered as a private method. Backends looking to populate this variable should do...
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python
train
120.227273
MSchnei/pyprf_feature
pyprf_feature/analysis/old/pRF_utils.py
https://github.com/MSchnei/pyprf_feature/blob/49004ede7ae1ddee07a30afe9ce3e2776750805c/pyprf_feature/analysis/old/pRF_utils.py#L90-L105
def calcR2(predTst, yTest, axis=0): """calculate coefficient of determination. Assumes that axis=0 is time Parameters ---------- predTst : np.array, predicted reponse for yTest yTest : np.array, acxtually observed response for yTest Returns ------- aryFunc : ...
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calculate coefficient of determination. Assumes that axis=0 is time Parameters ---------- predTst : np.array, predicted reponse for yTest yTest : np.array, acxtually observed response for yTest Returns ------- aryFunc : np.array R2
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python
train
29.3125
google/neuroglancer
python/neuroglancer/server.py
https://github.com/google/neuroglancer/blob/9efd12741013f464286f0bf3fa0b667f75a66658/python/neuroglancer/server.py#L245-L258
def stop(): """Stop the server, invalidating any viewer URLs. This allows any previously-referenced data arrays to be garbage collected if there are no other references to them. """ global global_server if global_server is not None: ioloop = global_server.ioloop def stop_ioloop(...
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Stop the server, invalidating any viewer URLs. This allows any previously-referenced data arrays to be garbage collected if there are no other references to them.
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python
train
31.857143
ethereum/pyrlp
rlp/codec.py
https://github.com/ethereum/pyrlp/blob/bb898f8056da3973204c699621350bf9565e43df/rlp/codec.py#L98-L111
def length_prefix(length, offset): """Construct the prefix to lists or strings denoting their length. :param length: the length of the item in bytes :param offset: ``0x80`` when encoding raw bytes, ``0xc0`` when encoding a list """ if length < 56: return ALL_BYTES[offset ...
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Construct the prefix to lists or strings denoting their length. :param length: the length of the item in bytes :param offset: ``0x80`` when encoding raw bytes, ``0xc0`` when encoding a list
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python
train
38.642857
nvbn/thefuck
thefuck/types.py
https://github.com/nvbn/thefuck/blob/40ab4eb62db57627bff10cf029d29c94704086a2/thefuck/types.py#L131-L147
def from_path(cls, path): """Creates rule instance from path. :type path: pathlib.Path :rtype: Rule """ name = path.name[:-3] with logs.debug_time(u'Importing rule: {};'.format(name)): rule_module = load_source(name, str(path)) priority = getattr...
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Creates rule instance from path. :type path: pathlib.Path :rtype: Rule
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python
train
40.823529
zimeon/iiif
iiif/static.py
https://github.com/zimeon/iiif/blob/9d10018d01202fa2a76dfa61598dc6eca07b471f/iiif/static.py#L214-L261
def generate(self, src=None, identifier=None): """Generate static files for one source image.""" self.src = src self.identifier = identifier # Get image details and calculate tiles im = self.manipulator_klass() im.srcfile = self.src im.set_max_image_pixels(self.ma...
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Generate static files for one source image.
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python
train
48.333333
openstax/cnx-publishing
cnxpublishing/views/publishing.py
https://github.com/openstax/cnx-publishing/blob/f55b4a2c45d8618737288f1b74b4139d5ac74154/cnxpublishing/views/publishing.py#L77-L108
def get_accept_license(request): """This produces JSON data for a user (at ``uid``) to view the license(s) they have accepted or will need to accept for a publication (at ``id``). """ publication_id = request.matchdict['id'] user_id = request.matchdict['uid'] # FIXME Is this an active publicati...
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This produces JSON data for a user (at ``uid``) to view the license(s) they have accepted or will need to accept for a publication (at ``id``).
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python
valid
33.84375