File size: 4,990 Bytes
aa5855d 210a82b aa5855d 210a82b e3b4539 210a82b ece99c8 e3b4539 7fdd402 210a82b 9339b9b 41321cd e6542c9 ece99c8 e3b4539 9339b9b 7fdd402 210a82b 9339b9b 7fdd402 9339b9b 41321cd ece99c8 e6542c9 e3b4539 aa5855d 210a82b 7fdd402 aa5855d 210a82b | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 | <!doctype html><html><head><meta charset="utf-8"><meta name="viewport" content="width=device-width,initial-scale=1"><meta http-equiv="refresh" content="300"><title>SimpleFoldData progress</title><style>body{font:16px system-ui;background:#101922;color:#e6edf3;max-width:1050px;margin:40px auto;padding:24px}h1{font-size:38px}.grid{display:grid;grid-template-columns:repeat(auto-fit,minmax(240px,1fr));gap:14px}.card{background:#1c2b38;border:1px solid #355068;border-radius:12px;padding:20px}.card span{display:block;color:#b7cad8}.card strong{display:block;font-size:30px;margin-top:12px}pre{white-space:pre-wrap;background:#17232e;padding:20px;border-radius:12px}a{color:#8acfff}</style></head><body><h1>SimpleFoldData</h1><p>One million structures · collection and curation</p><p>Updated 2026-10-14T13:03:54+00:00</p><div class="grid"><div class="card"><span>Target distinct sequences</span><strong>1,000,000</strong></div><div class="card"><span>Author AFESM clusters indexed</span><strong>2,036,414</strong></div><div class="card"><span>Author AFESM-E membership rows indexed</span><strong>8,616,595</strong></div><div class="card"><span>Author SwissProt IDs indexed</span><strong>269,003</strong></div><div class="card"><span>Coordinate-qualified candidates (before global deduplication)</span><strong>1,671,219</strong></div><div class="card"><span>Final selected unique sequences</span><strong>1,000,000</strong></div><div class="card"><span>Selected structures uploaded</span><strong>1,000,000</strong></div><div class="card"><span>Sequences embedded</span><strong>60</strong></div><div class="card"><span>Embedding bytes stored</span><strong>156,194,104</strong></div></div><h2>Build details</h2><pre># SimpleFoldData — collection and curation progress
Updated **2026-10-14T13:03:54+00:00**. Target: **1,000,000 distinct sequences with validated structures**.
Status: **release complete**.
| Measure | Count |
|---|---:|
| Target distinct sequences | 1,000,000 |
| Author AFESM clusters indexed | 2,036,414 |
| Author AFESM-E membership rows indexed | 8,616,595 |
| Author SwissProt IDs indexed | 269,003 |
| Coordinate-qualified candidates (before global deduplication) | 1,671,219 |
| Final selected unique sequences | 1,000,000 |
| Selected structures uploaded | 1,000,000 |
| Sequences embedded | 60 |
| Embedding bytes stored | 156,194,104 |
Source catalog counts are not counts of retrieved or training-ready structures. Candidate counts precede global sequence deduplication.
## Active stages
- **Author inventory:** author_inventory_complete; swissprot_author_rows=269,003, afesm_author_rows=2,036,414, targets=2,305,417, clusters=2,036,414, memberships=8,616,595, afesm_representatives_unmapped=0, members_with_multiple_clusters=0
- **SwissProt:** complete; coordinate_qualified=263,278, confidence_rejected=5,698, absent_from_available_archive=27
- **AFESM (superseded):** superseded; coordinate_qualified=4,477, source_unavailable=403, confidence_rejected=46, validation_rejected=2
- **AFDB bulk:** complete; coordinate_qualified=1,214,204, validation_rejected=464,863
- **PDB:** batch_complete; entry_processed=163,197, coordinate_qualified=457,015, validation_rejected=22
- **Final curation:** complete
- **Upload:** swissprot_candidates_uploaded
- **ESM-C 6B embeddings:** pilot_complete
## Scope
The source pool retains original IDs, cluster assignments, source versions, sequence and coordinate hashes, confidence values, and rejection reasons. It has no benchmark-specific contamination exclusions. Full-chain coordinate identity is checked independently from full biological parent identity; fragments remain explicitly identified.
## Jobs
```text
JobID|State|Elapsed|ExitCode
1320364|COMPLETED|00:01:27|0:0
1320364.batch|COMPLETED|00:01:27|0:0
1320364.extern|COMPLETED|00:01:27|0:0
1320405|COMPLETED|00:04:15|0:0
1320405.batch|COMPLETED|00:04:15|0:0
1320405.extern|COMPLETED|00:04:15|0:0
1320495|COMPLETED|00:01:05|0:0
1320495.batch|COMPLETED|00:01:05|0:0
1320495.extern|COMPLETED|00:01:05|0:0
1320498|COMPLETED|00:00:42|0:0
1320498.batch|COMPLETED|00:00:42|0:0
1320498.extern|COMPLETED|00:00:42|0:0
1320523|COMPLETED|00:00:43|0:0
1320523.batch|COMPLETED|00:00:43|0:0
1320523.extern|COMPLETED|00:00:43|0:0
1320537|COMPLETED|00:02:11|0:0
1320537.batch|COMPLETED|00:02:11|0:0
1320537.extern|COMPLETED|00:02:11|0:0
1320554|CANCELLED by 21014|00:31:03|0:0
1320554.batch|CANCELLED|00:31:03|0:15
1320554.extern|COMPLETED|00:31:03|0:0
1320625|COMPLETED|09:02:24|0:0
1320625.batch|COMPLETED|09:02:24|0:0
1320625.extern|COMPLETED|09:02:24|0:0
1321100|COMPLETED|00:41:25|0:0
1321100.batch|COMPLETED|00:41:25|0:0
1321100.extern|COMPLETED|00:41:25|0:0
1321145|COMPLETED|01:08:29|0:0
1321145.batch|COMPLETED|01:08:29|0:0
1321145.extern|COMPLETED|01:08:29|0:0
1337783|PENDING|00:00:00|0:0
```
Next hourly update scheduled; remaining updates: 149.
</pre><p><a href="https://huggingface.co/datasets/kevinlu4588/SimpleFoldData">Public dataset</a></p></body></html> |