File size: 3,164 Bytes
210a82b
 
aa5855d
210a82b
e3b4539
210a82b
 
 
 
 
 
 
ece99c8
 
e3b4539
7fdd402
 
210a82b
 
 
 
 
 
9339b9b
41321cd
e6542c9
ece99c8
e3b4539
9339b9b
7fdd402
210a82b
 
 
 
 
 
 
 
 
 
 
 
9339b9b
 
 
 
 
 
7fdd402
 
 
9339b9b
 
 
 
 
 
41321cd
 
 
ece99c8
 
 
e6542c9
 
 
e3b4539
 
 
aa5855d
210a82b
7fdd402
aa5855d
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
# SimpleFoldData — collection and curation progress

Updated **2026-10-14T13:03:54+00:00**. Target: **1,000,000 distinct sequences with validated structures**.

Status: **release complete**.

| Measure | Count |
|---|---:|
| Target distinct sequences | 1,000,000 |
| Author AFESM clusters indexed | 2,036,414 |
| Author AFESM-E membership rows indexed | 8,616,595 |
| Author SwissProt IDs indexed | 269,003 |
| Coordinate-qualified candidates (before global deduplication) | 1,671,219 |
| Final selected unique sequences | 1,000,000 |
| Selected structures uploaded | 1,000,000 |
| Sequences embedded | 60 |
| Embedding bytes stored | 156,194,104 |

Source catalog counts are not counts of retrieved or training-ready structures. Candidate counts precede global sequence deduplication.

## Active stages

- **Author inventory:** author_inventory_complete; swissprot_author_rows=269,003, afesm_author_rows=2,036,414, targets=2,305,417, clusters=2,036,414, memberships=8,616,595, afesm_representatives_unmapped=0, members_with_multiple_clusters=0
- **SwissProt:** complete; coordinate_qualified=263,278, confidence_rejected=5,698, absent_from_available_archive=27
- **AFESM (superseded):** superseded; coordinate_qualified=4,477, source_unavailable=403, confidence_rejected=46, validation_rejected=2
- **AFDB bulk:** complete; coordinate_qualified=1,214,204, validation_rejected=464,863
- **PDB:** batch_complete; entry_processed=163,197, coordinate_qualified=457,015, validation_rejected=22
- **Final curation:** complete
- **Upload:** swissprot_candidates_uploaded
- **ESM-C 6B embeddings:** pilot_complete

## Scope

The source pool retains original IDs, cluster assignments, source versions, sequence and coordinate hashes, confidence values, and rejection reasons. It has no benchmark-specific contamination exclusions. Full-chain coordinate identity is checked independently from full biological parent identity; fragments remain explicitly identified.

## Jobs

```text
JobID|State|Elapsed|ExitCode
1320364|COMPLETED|00:01:27|0:0
1320364.batch|COMPLETED|00:01:27|0:0
1320364.extern|COMPLETED|00:01:27|0:0
1320405|COMPLETED|00:04:15|0:0
1320405.batch|COMPLETED|00:04:15|0:0
1320405.extern|COMPLETED|00:04:15|0:0
1320495|COMPLETED|00:01:05|0:0
1320495.batch|COMPLETED|00:01:05|0:0
1320495.extern|COMPLETED|00:01:05|0:0
1320498|COMPLETED|00:00:42|0:0
1320498.batch|COMPLETED|00:00:42|0:0
1320498.extern|COMPLETED|00:00:42|0:0
1320523|COMPLETED|00:00:43|0:0
1320523.batch|COMPLETED|00:00:43|0:0
1320523.extern|COMPLETED|00:00:43|0:0
1320537|COMPLETED|00:02:11|0:0
1320537.batch|COMPLETED|00:02:11|0:0
1320537.extern|COMPLETED|00:02:11|0:0
1320554|CANCELLED by 21014|00:31:03|0:0
1320554.batch|CANCELLED|00:31:03|0:15
1320554.extern|COMPLETED|00:31:03|0:0
1320625|COMPLETED|09:02:24|0:0
1320625.batch|COMPLETED|09:02:24|0:0
1320625.extern|COMPLETED|09:02:24|0:0
1321100|COMPLETED|00:41:25|0:0
1321100.batch|COMPLETED|00:41:25|0:0
1321100.extern|COMPLETED|00:41:25|0:0
1321145|COMPLETED|01:08:29|0:0
1321145.batch|COMPLETED|01:08:29|0:0
1321145.extern|COMPLETED|01:08:29|0:0
1337783|PENDING|00:00:00|0:0
```

Next hourly update scheduled; remaining updates: 149.