Publish length-sorted sequence-deduplicated AFDB/PDB training manifest

release/afdb_source_audit.jsonl.gz

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+size 15140011

release/aliases.jsonl.gz

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+oid sha256:d6f3b13d209d130d7a7199c8fc8bdef773f20578c11b5c914acb775ee82e64d1
+size 59795424

release/manifest.parquet

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+version https://git-lfs.github.com/spec/v1
+oid sha256:aa2d906bbbf0aa40f9780ec5679058664710ad2eb9aebe3dbeadeda778379d1a
+size 652069867

release/summary.json

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+{
+  "selected_unique_sequences": 1000000,
+  "eligible_unique_sequences": 1316099,
+  "target": 1000000,
+  "target_met": true,
+  "sources": {
+    "afdb_bulk": 897764,
+    "pdb": 102236
+  },
+  "length_bins": {
+    "1-256": 693956,
+    "1025-2046": 7408,
+    "2047+": 65,
+    "257-512": 224522,
+    "513-1024": 74049
+  },
+  "total_residues": 233284471,
+  "selection": "All eligible unique PDB sequences first; fill to one million by seed-17 sequence-hash order from AFDB bulk. Exact duplicates prefer PDB.",
+  "clustering": "AFDB source cluster labels retained; no joint PDB/AFDB reclustering or benchmark exclusions claimed.",
+  "source_revision": "a7ededeb7caeaef3892f40f2e4df3bb9236b02f8",
+  "embeddings": "pilot only; production cache pending",
+  "coordinate_verified_sequences": 1000000,
+  "selected_distinct_afdb_clusters": 898096,
+  "source_record_counts": {
+    "afdb_bulk": 1214204,
+    "pdb": 457015
+  },
+  "exact_duplicate_records": 355120,
+  "source_overlap_unique_sequences": 321,
+  "unsupported_nominal_encoder_length_count": 65
+}