Update collection and curation progress 2026-10-14T06:02:50+00:00

README.md

@@ -66,6 +66,6 @@ receive an explicit embedding status; they are never silently cropped.
 
 ## Live progress
 
-Updated 2026-10-14T05:02:50+00:00. Coordinate-qualified candidates before deduplication: **1,671,219**. Final selected unique sequences: **1,000,000**.
+Updated 2026-10-14T06:02:50+00:00. Coordinate-qualified candidates before deduplication: **1,671,219**. Final selected unique sequences: **1,000,000**.
 
 [Detailed progress and job status](reports/progress.md) · [Machine-readable status](reports/progress.json) · [HTML dashboard](reports/progress.html)

reports/progress.html

@@ -1,6 +1,6 @@
-<!doctype html><html><head><meta charset="utf-8"><meta name="viewport" content="width=device-width,initial-scale=1"><meta http-equiv="refresh" content="300"><title>SimpleFoldData progress</title><style>body{font:16px system-ui;background:#101922;color:#e6edf3;max-width:1050px;margin:40px auto;padding:24px}h1{font-size:38px}.grid{display:grid;grid-template-columns:repeat(auto-fit,minmax(240px,1fr));gap:14px}.card{background:#1c2b38;border:1px solid #355068;border-radius:12px;padding:20px}.card span{display:block;color:#b7cad8}.card strong{display:block;font-size:30px;margin-top:12px}pre{white-space:pre-wrap;background:#17232e;padding:20px;border-radius:12px}a{color:#8acfff}</style></head><body><h1>SimpleFoldData</h1><p>One million structures · collection and curation</p><p>Updated 2026-10-14T05:02:50+00:00</p><div class="grid"><div class="card"><span>Target distinct sequences</span><strong>1,000,000</strong></div><div class="card"><span>Author AFESM clusters indexed</span><strong>2,036,414</strong></div><div class="card"><span>Author AFESM-E membership rows indexed</span><strong>8,616,595</strong></div><div class="card"><span>Author SwissProt IDs indexed</span><strong>269,003</strong></div><div class="card"><span>Coordinate-qualified candidates (before global deduplication)</span><strong>1,671,219</strong></div><div class="card"><span>Final selected unique sequences</span><strong>1,000,000</strong></div><div class="card"><span>Selected structures uploaded</span><strong>1,000,000</strong></div><div class="card"><span>Sequences embedded</span><strong>60</strong></div><div class="card"><span>Embedding bytes stored</span><strong>156,194,104</strong></div></div><h2>Build details</h2><pre># SimpleFoldData — collection and curation progress
+<!doctype html><html><head><meta charset="utf-8"><meta name="viewport" content="width=device-width,initial-scale=1"><meta http-equiv="refresh" content="300"><title>SimpleFoldData progress</title><style>body{font:16px system-ui;background:#101922;color:#e6edf3;max-width:1050px;margin:40px auto;padding:24px}h1{font-size:38px}.grid{display:grid;grid-template-columns:repeat(auto-fit,minmax(240px,1fr));gap:14px}.card{background:#1c2b38;border:1px solid #355068;border-radius:12px;padding:20px}.card span{display:block;color:#b7cad8}.card strong{display:block;font-size:30px;margin-top:12px}pre{white-space:pre-wrap;background:#17232e;padding:20px;border-radius:12px}a{color:#8acfff}</style></head><body><h1>SimpleFoldData</h1><p>One million structures · collection and curation</p><p>Updated 2026-10-14T06:02:50+00:00</p><div class="grid"><div class="card"><span>Target distinct sequences</span><strong>1,000,000</strong></div><div class="card"><span>Author AFESM clusters indexed</span><strong>2,036,414</strong></div><div class="card"><span>Author AFESM-E membership rows indexed</span><strong>8,616,595</strong></div><div class="card"><span>Author SwissProt IDs indexed</span><strong>269,003</strong></div><div class="card"><span>Coordinate-qualified candidates (before global deduplication)</span><strong>1,671,219</strong></div><div class="card"><span>Final selected unique sequences</span><strong>1,000,000</strong></div><div class="card"><span>Selected structures uploaded</span><strong>1,000,000</strong></div><div class="card"><span>Sequences embedded</span><strong>60</strong></div><div class="card"><span>Embedding bytes stored</span><strong>156,194,104</strong></div></div><h2>Build details</h2><pre># SimpleFoldData — collection and curation progress
 
-Updated **2026-10-14T05:02:50+00:00**. Target: **1,000,000 distinct sequences with validated structures**.
+Updated **2026-10-14T06:02:50+00:00**. Target: **1,000,000 distinct sequences with validated structures**.
 
 Status: **release complete**.
 
@@ -67,8 +67,8 @@ JobID|State|Elapsed|ExitCode
 1321145|COMPLETED|01:08:29|0:0
 1321145.batch|COMPLETED|01:08:29|0:0
 1321145.extern|COMPLETED|01:08:29|0:0
-1331847|PENDING|00:00:00|0:0
+1332424|PENDING|00:00:00|0:0
 ```
 
-Next hourly update scheduled; remaining updates: 157.
+Next hourly update scheduled; remaining updates: 156.
 </pre><p><a href="https://huggingface.co/datasets/kevinlu4588/SimpleFoldData">Public dataset</a></p></body></html>

reports/progress.json

@@ -1,5 +1,5 @@
 {
-  "updated_utc": "2026-10-14T05:02:50+00:00",
+  "updated_utc": "2026-10-14T06:02:50+00:00",
   "target": 1000000,
   "release_complete": true,
   "inventory": {
@@ -275,7 +275,7 @@
     "publish_sources": "1320537",
     "afdb_bulk": "1321100",
     "finalize_and_publish": "1321145",
-    "hourly_progress": "1331847"
+    "hourly_progress": "1332424"
   },
   "scheduler": [
     "1320364|COMPLETED|00:01:27|0:0",
@@ -308,19 +308,19 @@
     "1321145|COMPLETED|01:08:29|0:0",
     "1321145.batch|COMPLETED|01:08:29|0:0",
     "1321145.extern|COMPLETED|01:08:29|0:0",
-    "1331847|PENDING|00:00:00|0:0"
+    "1332424|PENDING|00:00:00|0:0"
   ],
   "next_update": {
     "scheduled": true,
-    "job_id": "1331847",
-    "hourly_updates_remaining": 157
+    "job_id": "1332424",
+    "hourly_updates_remaining": 156
   },
   "queue": [
     {
-      "id": "1331847",
+      "id": "1332424",
       "name": "simplefold-progress",
       "state": "PENDING",
-      "start_cluster_time": "2026-10-14T02:02:50",
+      "start_cluster_time": "2026-10-14T03:02:50",
       "reason": "(BeginTime)"
     }
   ],
@@ -335,7 +335,7 @@
     {
       "stage": "Progress updates",
       "mode": "Hourly schedule",
-      "detail": "Next job 1331847; 157 scheduled update cycles remain."
+      "detail": "Next job 1332424; 156 scheduled update cycles remain."
     },
     {
       "stage": "Final deduplication and selection",

reports/progress.md

@@ -1,6 +1,6 @@
 # SimpleFoldData — collection and curation progress
 
-Updated **2026-10-14T05:02:50+00:00**. Target: **1,000,000 distinct sequences with validated structures**.
+Updated **2026-10-14T06:02:50+00:00**. Target: **1,000,000 distinct sequences with validated structures**.
 
 Status: **release complete**.
 
@@ -67,7 +67,7 @@ JobID|State|Elapsed|ExitCode
 1321145|COMPLETED|01:08:29|0:0
 1321145.batch|COMPLETED|01:08:29|0:0
 1321145.extern|COMPLETED|01:08:29|0:0
-1331847|PENDING|00:00:00|0:0
+1332424|PENDING|00:00:00|0:0
 ```
 
-Next hourly update scheduled; remaining updates: 157.
+Next hourly update scheduled; remaining updates: 156.