kuramot6f's picture
Initial release (history squashed)
7a088d4
Raw History Blame Contribute Delete
16.8 kB
#!/usr/bin/env python3
"""Pack curated ds/ artifacts into Hugging Face-ready staging folders.
Usage: .venv-hf/bin/python scripts/hf_pack.py [--out hf-staging] [--only REPO ...]
Each repo folder is self-contained (README.md card + data). Large JSONL is
converted to zstd parquet shards; nested fields become JSON strings so the
schema is stable. Model files / small files are hard-linked (no extra disk).
Writes <repo>/pack_report.json with row counts and sha256 checks.
"""
from __future__ import annotations
import argparse
import hashlib
import json
import os
import shutil
from pathlib import Path
import pyarrow as pa
import pyarrow.parquet as pq
import re
DS = Path(__file__).resolve().parents[1]
SHARD_BYTES = 400 * 1024 * 1024 # approx uncompressed text per shard
CARDS = DS / "scripts/hf_cards"
# --- secrets must never reach a (public) repo: redact in published copies
SECRET_RE = re.compile(r"(sk-proj-[A-Za-z0-9_-]{20,}|sk-[A-Za-z0-9]{20,}|hf_[A-Za-z0-9]{30,}|ghp_[A-Za-z0-9]{20,}|AKIA[0-9A-Z]{16})")
TEXT_SUFFIX = {".py", ".md", ".json", ".txt", ".sh", ".yaml", ".yml", ".jsonl", ".org", ".log", ".csv", ".toml", ".cfg"}
REDACTED: list[str] = []
# --- per-document licenses (see scripts/hf_cards/LICENSES)
CBETA_IDS = set((CARDS / "kanripo_cbeta_ids.txt").read_text().split())
SOURCE_LICENSE = {"ndl": "pdm-1.0", "kanripo": "cc-by-sa-4.0", "minhon": "cc-by-sa-4.0", "wikisource": "cc-by-sa-4.0"}
def license_for(source: str, kanripo_work: str | None = None) -> str:
if source == "kanripo" and kanripo_work in CBETA_IDS:
return "cc-by-nc-sa-3.0-tw"
return SOURCE_LICENSE[source]
# ---------------------------------------------------------------- helpers
def link(src: Path, dst: Path) -> None:
dst.parent.mkdir(parents=True, exist_ok=True)
if dst.exists():
dst.unlink()
if src.suffix.lower() in TEXT_SUFFIX and src.stat().st_size < 20_000_000:
txt = src.read_text(encoding="utf-8", errors="surrogateescape")
if SECRET_RE.search(txt):
dst.write_text(SECRET_RE.sub("<REDACTED>", txt), encoding="utf-8", errors="surrogateescape")
REDACTED.append(str(src.relative_to(DS)))
return
try:
os.link(src, dst)
except OSError:
shutil.copy2(src, dst)
def link_tree(src: Path, dst: Path, skip=("__pycache__", ".lock")) -> int:
n = 0
for p in sorted(src.rglob("*")):
if p.is_file() and not any(s in p.parts or p.name == s for s in skip):
link(p, dst / p.relative_to(src))
n += 1
return n
def iter_jsonl(path: Path):
with path.open("r", encoding="utf-8") as f:
for line in f:
if line.strip():
yield json.loads(line)
def infer_types(rows_iter) -> dict[str, str]:
"""key -> 'int'|'float'|'bool'|'str'|'json' (union over all rows)."""
kinds: dict[str, set] = {}
for r in rows_iter:
for k, v in r.items():
s = kinds.setdefault(k, set())
if v is None:
continue
if isinstance(v, bool):
s.add("bool")
elif isinstance(v, int):
s.add("int")
elif isinstance(v, float):
s.add("float")
elif isinstance(v, str):
s.add("str")
else:
s.add("json")
out = {}
for k, s in kinds.items():
if not s or s == {"str"}:
out[k] = "str"
elif s == {"int"}:
out[k] = "int"
elif s <= {"int", "float"}:
out[k] = "float"
elif s == {"bool"}:
out[k] = "bool"
else:
out[k] = "json" # mixed or nested -> JSON string
return out
PA = {"int": pa.int64(), "float": pa.float64(), "bool": pa.bool_(), "str": pa.string(), "json": pa.string()}
def coerce(v, t):
if v is None:
return None
if t == "json":
return json.dumps(v, ensure_ascii=False)
if t == "float":
return float(v)
return v
class ShardWriter:
def __init__(self, outdir: Path, prefix: str, types: dict[str, str]):
self.outdir, self.prefix, self.types = outdir, prefix, types
self.schema = pa.schema([(k, PA[t]) for k, t in types.items()])
self.buf: list[dict] = []
self.bytes = 0
self.files: list[Path] = []
self.rows = 0
outdir.mkdir(parents=True, exist_ok=True)
def add(self, row: dict):
self.buf.append({k: coerce(row.get(k), t) for k, t in self.types.items()})
self.bytes += len(row.get("text") or "") * 3 + 512
if self.bytes >= SHARD_BYTES:
self.flush()
def flush(self):
if not self.buf:
return
p = self.outdir / f"{self.prefix}-{len(self.files):05d}.parquet"
tbl = pa.Table.from_pylist(self.buf, schema=self.schema)
pq.write_table(tbl, p, compression="zstd", compression_level=9, row_group_size=2000)
self.files.append(p)
self.rows += len(self.buf)
self.buf, self.bytes = [], 0
def close(self):
self.flush()
# rename to HF shard convention prefix-00000-of-0000N.parquet
n = len(self.files)
final = []
for i, p in enumerate(self.files):
q = p.with_name(f"{self.prefix}-{i:05d}-of-{n:05d}.parquet")
p.rename(q)
final.append(q)
self.files = final
return self.rows
def jsonl_to_parquet(src: Path, outdir: Path, prefix: str, transform=None) -> dict:
tf = transform or (lambda r: r)
types = infer_types(tf(r) for r in iter_jsonl(src))
w = ShardWriter(outdir, prefix, types)
h = hashlib.sha256()
n_src = 0
for r in iter_jsonl(src):
n_src += 1
r = tf(r)
h.update((r.get("text") or "").encode())
w.add(r)
w.close()
return {"source": str(src.relative_to(DS)), "rows_source": n_src, "rows_written": w.rows,
"text_concat_sha256": h.hexdigest(), "files": [p.name for p in w.files], "types": types}
def verify_parquet(files: list[Path], expect_rows: int, expect_sha: str) -> dict:
h = hashlib.sha256()
n = 0
for p in sorted(files):
pf = pq.ParquetFile(p)
has_text = "text" in pf.schema_arrow.names
for rg in range(pf.num_row_groups):
t = pf.read_row_group(rg, columns=["text"] if has_text else None)
n += t.num_rows
if has_text:
for s in t.column("text").to_pylist():
h.update((s or "").encode())
ok = n == expect_rows and (h.hexdigest() == expect_sha)
return {"rows_readback": n, "text_sha_match": h.hexdigest() == expect_sha, "ok": ok}
def write(path: Path, text: str):
path.parent.mkdir(parents=True, exist_ok=True)
path.write_text(text, encoding="utf-8")
# ---------------------------------------------------------------- repos
def pack_pretrain(out: Path) -> dict:
"""unified/pretrain-v1/build-003 joined with split assignment (build-006)."""
src = DS / "unified/pretrain-v1/build-003/pretrain.jsonl"
spl = DS / "unified/training-tokens-v1/build-006/splits.jsonl"
split_of = {}
for r in iter_jsonl(spl):
split_of[r["id"]] = {k: r[k] for k in ("split", "era", "era_basis", "group", "tokens")}
keep = ["id", "source", "title", "era", "era_basis", "group", "split", "tokens", "normalized_chars",
"date_status", "script_profile", "license_status", "source_document_id", "work_candidate_id",
"unit_type", "unit_label", "license", "text_sha256", "text"]
def tf(r):
s = split_of[r["id"]]
row = {**r, **s}
meta = {k: v for k, v in r.items() if k not in keep}
o = {k: row.get(k) for k in keep}
o["license"] = license_for(r["source"], r["id"].split("/")[1] if r["source"] == "kanripo" else None)
o["metadata"] = json.dumps(meta, ensure_ascii=False)
return o
types = {k: "str" for k in keep} | {"tokens": "int", "normalized_chars": "int", "metadata": "str"}
writers = {s: ShardWriter(out / "data", s, types) for s in ("train", "validation", "test")}
shas = {s: hashlib.sha256() for s in writers}
counts = {s: 0 for s in writers}
lic_counts: dict = {}
tokens = {s: 0 for s in writers}
n = 0
for r in iter_jsonl(src):
n += 1
o = tf(r)
s = o["split"]
writers[s].add(o)
shas[s].update(o["text"].encode())
counts[s] += 1
tokens[s] += o["tokens"]
k = (o["source"], o["license"])
lic_counts[k] = [lic_counts.get(k, [0, 0])[0] + 1, lic_counts.get(k, [0, 0])[1] + o["tokens"]]
rep = {"rows_source": n, "rows_split_file": len(split_of), "splits": {},
"license_docs_tokens": {f"{a}|{b}": v for (a, b), v in sorted(lic_counts.items())}}
for s, w in writers.items():
w.close()
rep["splits"][s] = {"rows": counts[s], "tokens_no_bos_eos": tokens[s], "files": [p.name for p in w.files],
**verify_parquet(w.files, counts[s], shas[s].hexdigest())}
# provenance files
for rel in ["unified/current_pretraining.json"]:
link(DS / rel, out / "meta" / Path(rel).name)
for d, names in {
"unified/pretrain-v1/build-003": ["manifest.json", "report.json", "verification.json", "excluded.jsonl"],
"unified/split-groups-v1/build-003": ["manifest.json", "report.json", "groups.json", "joins.jsonl"],
"unified/training-tokens-v1/build-006": ["manifest.json", "report.json", "REPORT.md", "verification.json",
"evaluation-windows.jsonl", "group-joins.jsonl"],
}.items():
for nm in names:
link(DS / d / nm, out / "meta" / d.replace("/", "__") / nm)
link_tree(DS / "scripts", out / "code/scripts", skip=("__pycache__",))
link_tree(DS / "worklog", out / "code/worklog")
for nm in ["README.md", "agent.md", "ndl_download.py"]:
link(DS / nm, out / "code" / nm)
return rep
def pack_sources(out: Path) -> dict:
rep = {}
jobs = {
"ndl": DS / "corpus/preprocessed-v1/build-001/documents.jsonl",
"kanripo": DS / "kanripo/preprocessed-v1/build-002/documents.jsonl",
"minhon": DS / "minhon/preprocessed-v1/build-003-bibdated/clean_pages.jsonl",
"wikisource": DS / "wikisource/corpus-v1/documents.jsonl",
"wikisource_works": DS / "wikisource/corpus-v1/works.jsonl",
"ndl_catalog": DS / "corpus/metadata/selected_before_1868.jsonl",
"ndl_api_catalog": DS / "corpus/metadata/api_selected_before_1868.jsonl",
}
tfs = {
"ndl": lambda r: {**r, "license": license_for("ndl")},
"kanripo": lambda r: {**r, "license": license_for("kanripo", r["work_id"])},
"minhon": lambda r: {**r, "license": license_for("minhon")},
"wikisource": lambda r: {**r, "license": license_for("wikisource")},
"wikisource_works": lambda r: {**r, "license": license_for("wikisource")},
}
for name, src in jobs.items():
r = jsonl_to_parquet(src, out / "data" / name, "train", transform=tfs.get(name))
r.update(verify_parquet([out / "data" / name / f for f in r["files"]], r["rows_source"], r["text_concat_sha256"]))
rep[name] = r
# per-PID NDL API bibliographic JSON (31k small files) -> one parquet
rows = []
for p in sorted((DS / "corpus/metadata").glob("*.json")):
rows.append({"pid": p.stem, "json": p.read_text(encoding="utf-8")})
d = out / "data/ndl_api_bibliography"
d.mkdir(parents=True, exist_ok=True)
pq.write_table(pa.Table.from_pylist(rows), d / "train-00000-of-00001.parquet", compression="zstd")
rep["ndl_api_bibliography"] = {"rows": len(rows)}
# side files per source build (manifests, reports, edits, exclusions)
for d, names in {
"corpus/preprocessed-v1/build-001": ["manifest.json", "report.json", "verification.json",
"output_verification.json", "excluded.jsonl", "edits.jsonl"],
"kanripo/preprocessed-v1/build-002": ["manifest.json", "report.json", "verification.json", "excluded.jsonl",
"duplicates.jsonl", "edits.jsonl", "files.jsonl"],
"minhon/preprocessed-v1/build-003-bibdated": ["README.md", "manifest.json", "report.json", "verification.json",
"date_evidence.jsonl", "documents.csv",
"included_documents.csv", "excluded_documents.csv"],
"wikisource/corpus-v1": ["report.json", "duplicates.jsonl"],
}.items():
for nm in names:
link(DS / d / nm, out / "meta" / d.replace("/", "__") / nm)
link(DS / "corpus/metadata/dataset_202602_k_internet.zip", out / "meta/ndl/dataset_202602_k_internet.zip")
link_tree(DS / "kanripo/metadata", out / "meta/kanripo/metadata")
link_tree(DS / "minhon/title-lists", out / "meta/minhon/title-lists")
link_tree(DS / "wikisource/metadata", out / "meta/wikisource/metadata")
for nm in ["pids_before_1868.txt", "pids_api_before_1868.txt"]:
link(DS / nm, out / "meta/ndl" / nm)
for nm in ["oncoj.csv", "lexicon.xml"]:
link(DS / nm, out / "extras" / nm)
return rep
def pack_sft(out: Path) -> dict:
exp = DS / "unified/sft-dialogue-v1/build-openai-001/exports/002"
by_split: dict[str, list[str]] = {}
for line in (exp / "dialogues.jsonl").read_text(encoding="utf-8").splitlines():
if line.strip():
by_split.setdefault(json.loads(line).get("split", "train"), []).append(line)
for s, lines in by_split.items():
write(out / "data" / f"{s}.jsonl", "\n".join(lines) + "\n")
for p in exp.iterdir():
if p.name != "dialogues.jsonl":
link(p, out / "meta/export-002" / p.name)
b = DS / "unified/sft-dialogue-v1/build-openai-001"
for nm in ["SUMMARY.md", "manifest.json", "coverage-verification.json"]:
link(b / nm, out / "meta" / nm)
link_tree(DS / "unified/evaluation-tasks-v1/validation-001", out / "evaluation-tasks")
return {"splits": {s: len(v) for s, v in by_split.items()}}
def pack_model(src: Path, out: Path, extra: dict[str, Path] | None = None, skip=("__pycache__", ".lock")) -> dict:
n = link_tree(src, out, skip=skip)
for nm, p in (extra or {}).items():
link(p, out / nm)
return {"files": n + len(extra or {})}
REPOS = {
"classical-ja-pretrain": ("dataset", pack_pretrain),
"classical-ja-sources": ("dataset", pack_sources),
"classical-ja-sft-dialogue": ("dataset", pack_sft),
"classical-ja-tokenizer": ("model", lambda o: pack_model(
DS / "unified/tokenizer-v1/build-001", o,
{"classical_tokenizer.py": DS / "runs/classical-smollm2-trunk/export/classical_tokenizer.py",
"tokenizer_config.json": DS / "runs/classical-smollm2-trunk/export/tokenizer_config.json"},
skip=("__pycache__", ".lock", "train.txt"))),
"classical-smollm2-trunk": ("model", lambda o: pack_model(
DS / "runs/classical-smollm2-trunk/export", o,
{"metrics.jsonl": DS / "runs/classical-smollm2-trunk/metrics.jsonl",
"run.json": DS / "runs/classical-smollm2-trunk/run.json",
"status.json": DS / "runs/classical-smollm2-trunk/status.json"})),
"classical-smollm2-sft": ("model", lambda o: pack_model(
DS / "runs/classical-sft-confidence2-001/checkpoint-000090", o,
{"SUMMARY.md": DS / "runs/classical-sft-confidence2-001/SUMMARY.md",
"best.json": DS / "runs/classical-sft-confidence2-001/best.json",
"metrics.jsonl": DS / "runs/classical-sft-confidence2-001/metrics.jsonl",
"training_config.json": DS / "runs/classical-sft-confidence2-001/config.json"})),
}
def main():
ap = argparse.ArgumentParser()
ap.add_argument("--out", default=str(DS / "hf-staging"))
ap.add_argument("--only", nargs="*")
a = ap.parse_args()
for name, (kind, fn) in REPOS.items():
if a.only and name not in a.only:
continue
out = Path(a.out) / name
if out.exists():
shutil.rmtree(out)
out.mkdir(parents=True)
print(f"[pack] {name}", flush=True)
rep = {"repo": name, "type": kind, **fn(out)}
card = CARDS / f"{name}.md"
if card.exists():
link(card, out / "README.md")
if kind == "dataset":
link_tree(CARDS / "LICENSES", out / "LICENSES")
else:
link(CARDS / "APACHE-2.0.txt", out / "LICENSE")
rep["redacted_files"] = sorted(set(REDACTED)); REDACTED.clear()
write(out / "pack_report.json", json.dumps(rep, ensure_ascii=False, indent=2))
print(json.dumps(rep, ensure_ascii=False)[:2000], flush=True)
if __name__ == "__main__":
main()