| python clean_data.py \ | |
| -pfam_seed_file EXAMPLE_INPUTS/EXAMPLE_Pfam-A.seed \ | |
| -tree_dir EXAMPLE_INPUTS/trees \ | |
| -num_splits 2 \ | |
| -metadata_header header \ | |
| -rand_key 42 \ | |
| -topk1_valid 0 \ | |
| -topk2_valid 0 \ | |
| -alphabet_size 20 \ | |
| -max_len 5000 \ | |
| -batch_size 10 | |