Add aligned cell feedback for the existing Value F1 reward
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- README.md +5 -1
- harbor-manifest.json +0 -0
- tasks/charts-inside-documents--agency-staffing-invoice-01-9aebdbb0d3/task.toml +1 -1
- tasks/charts-inside-documents--agency-staffing-invoice-01-9aebdbb0d3/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--agency-staffing-invoice-01-9aebdbb0d3/tests/verifier.py +51 -5
- tasks/charts-inside-documents--aggregate-qc-report-01-3bcd23f4aa/task.toml +1 -1
- tasks/charts-inside-documents--aggregate-qc-report-01-3bcd23f4aa/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--aggregate-qc-report-01-3bcd23f4aa/tests/verifier.py +51 -5
- tasks/charts-inside-documents--assessment-billing-run-01-a758923341/task.toml +1 -1
- tasks/charts-inside-documents--assessment-billing-run-01-a758923341/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--assessment-billing-run-01-a758923341/tests/verifier.py +51 -5
- tasks/charts-inside-documents--capacity-change-pack-01-426d0e3de2/task.toml +1 -1
- tasks/charts-inside-documents--capacity-change-pack-01-426d0e3de2/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--capacity-change-pack-01-426d0e3de2/tests/verifier.py +51 -5
- tasks/charts-inside-documents--chemo-verification-01-755808e636/task.toml +1 -1
- tasks/charts-inside-documents--chemo-verification-01-755808e636/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--chemo-verification-01-755808e636/tests/verifier.py +51 -5
- tasks/charts-inside-documents--claims-triage-bundle-01-6e0e405433/task.toml +1 -1
- tasks/charts-inside-documents--claims-triage-bundle-01-6e0e405433/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--claims-triage-bundle-01-6e0e405433/tests/verifier.py +51 -5
- tasks/charts-inside-documents--contractor-dispute-binder-01-62110b282f/task.toml +1 -1
- tasks/charts-inside-documents--contractor-dispute-binder-01-62110b282f/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--contractor-dispute-binder-01-62110b282f/tests/verifier.py +51 -5
- tasks/charts-inside-documents--dam-operations-report-01-dec2676e78/task.toml +1 -1
- tasks/charts-inside-documents--dam-operations-report-01-dec2676e78/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--dam-operations-report-01-dec2676e78/tests/verifier.py +51 -5
- tasks/charts-inside-documents--drilling-report-bundle-01-9ba0552503/task.toml +1 -1
- tasks/charts-inside-documents--drilling-report-bundle-01-9ba0552503/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--drilling-report-bundle-01-9ba0552503/tests/verifier.py +51 -5
- tasks/charts-inside-documents--earthwork-quantity-packet-01-c12c7681e1/task.toml +1 -1
- tasks/charts-inside-documents--earthwork-quantity-packet-01-c12c7681e1/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--earthwork-quantity-packet-01-c12c7681e1/tests/verifier.py +51 -5
- tasks/charts-inside-documents--eligibility-appeals-file-01-220e0e6b43/task.toml +1 -1
- tasks/charts-inside-documents--eligibility-appeals-file-01-220e0e6b43/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--eligibility-appeals-file-01-220e0e6b43/tests/verifier.py +51 -5
- tasks/charts-inside-documents--gantt-schedule-board-01-824296e2a8/task.toml +1 -1
- tasks/charts-inside-documents--gantt-schedule-board-01-824296e2a8/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--gantt-schedule-board-01-824296e2a8/tests/verifier.py +51 -5
- tasks/charts-inside-documents--integrity-filing-annex-01-5eab6bac71/task.toml +1 -1
- tasks/charts-inside-documents--integrity-filing-annex-01-5eab6bac71/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--integrity-filing-annex-01-5eab6bac71/tests/verifier.py +51 -5
- tasks/charts-inside-documents--med-gas-shutdown-notice-01-a3c934ad1a/task.toml +1 -1
- tasks/charts-inside-documents--med-gas-shutdown-notice-01-a3c934ad1a/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--med-gas-shutdown-notice-01-a3c934ad1a/tests/verifier.py +51 -5
- tasks/charts-inside-documents--parking-variance-hearing-01-57fcc48058/task.toml +1 -1
- tasks/charts-inside-documents--parking-variance-hearing-01-57fcc48058/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--parking-variance-hearing-01-57fcc48058/tests/verifier.py +51 -5
- tasks/charts-inside-documents--pipeline-inspection-report-01-78ea67a3bf/task.toml +1 -1
- tasks/charts-inside-documents--pipeline-inspection-report-01-78ea67a3bf/tests/Dockerfile +1 -1
- tasks/charts-inside-documents--pipeline-inspection-report-01-78ea67a3bf/tests/verifier.py +51 -5
README.md
CHANGED
|
@@ -228,8 +228,12 @@ harbor run --repo https://huggingface.co/datasets/llamaindex/ExtractBenchPro -p
|
|
| 228 |
|
| 229 |
Instructions reproduce the [published coding-agent prompt](https://arxiv.org/html/2607.29677v1#A3.SS1), with a standardized document filename.
|
| 230 |
Agents receive only `document.pdf` and `schema.json` and write `output.json`.
|
| 231 |
-
The separate verifier uses the existing ExtractBench evaluator at commit `
|
| 232 |
The reward is Value F1 in [0, 1]; `metrics.json` also records perfect-document status.
|
|
|
|
|
|
|
|
|
|
|
|
|
| 233 |
This prompt does not request citations, so this lane does not measure grounding.
|
| 234 |
The agent timeout is 1800 seconds per document.
|
| 235 |
|
|
|
|
| 228 |
|
| 229 |
Instructions reproduce the [published coding-agent prompt](https://arxiv.org/html/2607.29677v1#A3.SS1), with a standardized document filename.
|
| 230 |
Agents receive only `document.pdf` and `schema.json` and write `output.json`.
|
| 231 |
+
The separate verifier uses the existing ExtractBench evaluator at commit `2f27f100730afc7c395602e26a2a87e07ea66b31`.
|
| 232 |
The reward is Value F1 in [0, 1]; `metrics.json` also records perfect-document status.
|
| 233 |
+
`feedback.json` records aligned output/reference cell paths, value outcomes, and
|
| 234 |
+
each matched cell's contribution to the same F1 reward. Paths refer to normalized
|
| 235 |
+
scoring inputs; one-sided cells contribute to the denominator. This feedback does
|
| 236 |
+
not change the reward or assign credit to reasoning steps.
|
| 237 |
This prompt does not request citations, so this lane does not measure grounding.
|
| 238 |
The agent timeout is 1800 seconds per document.
|
| 239 |
|
harbor-manifest.json
CHANGED
|
The diff for this file is too large to render.
See raw diff
|
|
|
tasks/charts-inside-documents--agency-staffing-invoice-01-9aebdbb0d3/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/agency_staffing_invoice_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:handwritten", "length:medium", "domain:D6"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/agency_staffing_invoice_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:handwritten", "length:medium", "domain:D6"]
|
| 12 |
|
tasks/charts-inside-documents--agency-staffing-invoice-01-9aebdbb0d3/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--agency-staffing-invoice-01-9aebdbb0d3/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--aggregate-qc-report-01-3bcd23f4aa/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/aggregate_qc_report_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D3"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/aggregate_qc_report_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D3"]
|
| 12 |
|
tasks/charts-inside-documents--aggregate-qc-report-01-3bcd23f4aa/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--aggregate-qc-report-01-3bcd23f4aa/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--assessment-billing-run-01-a758923341/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/assessment_billing_run_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D8"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/assessment_billing_run_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D8"]
|
| 12 |
|
tasks/charts-inside-documents--assessment-billing-run-01-a758923341/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--assessment-billing-run-01-a758923341/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--capacity-change-pack-01-426d0e3de2/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/capacity_change_pack_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:image", "length:medium", "domain:D2"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/capacity_change_pack_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:image", "length:medium", "domain:D2"]
|
| 12 |
|
tasks/charts-inside-documents--capacity-change-pack-01-426d0e3de2/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--capacity-change-pack-01-426d0e3de2/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--chemo-verification-01-755808e636/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/chemo_verification_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:digital", "length:medium", "domain:D6"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/chemo_verification_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:digital", "length:medium", "domain:D6"]
|
| 12 |
|
tasks/charts-inside-documents--chemo-verification-01-755808e636/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--chemo-verification-01-755808e636/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--claims-triage-bundle-01-6e0e405433/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/claims_triage_bundle_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D1"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/claims_triage_bundle_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D1"]
|
| 12 |
|
tasks/charts-inside-documents--claims-triage-bundle-01-6e0e405433/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--claims-triage-bundle-01-6e0e405433/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--contractor-dispute-binder-01-62110b282f/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/contractor_dispute_binder_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D3"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/contractor_dispute_binder_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D3"]
|
| 12 |
|
tasks/charts-inside-documents--contractor-dispute-binder-01-62110b282f/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--contractor-dispute-binder-01-62110b282f/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--dam-operations-report-01-dec2676e78/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/dam_operations_report_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:digital", "length:medium", "domain:D2"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/dam_operations_report_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:digital", "length:medium", "domain:D2"]
|
| 12 |
|
tasks/charts-inside-documents--dam-operations-report-01-dec2676e78/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--dam-operations-report-01-dec2676e78/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--drilling-report-bundle-01-9ba0552503/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/drilling_report_bundle_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:digital", "length:medium", "domain:D2"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/drilling_report_bundle_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:digital", "length:medium", "domain:D2"]
|
| 12 |
|
tasks/charts-inside-documents--drilling-report-bundle-01-9ba0552503/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--drilling-report-bundle-01-9ba0552503/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--earthwork-quantity-packet-01-c12c7681e1/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/earthwork_quantity_packet_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:image", "length:medium", "domain:D3"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/earthwork_quantity_packet_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:image", "length:medium", "domain:D3"]
|
| 12 |
|
tasks/charts-inside-documents--earthwork-quantity-packet-01-c12c7681e1/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--earthwork-quantity-packet-01-c12c7681e1/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--eligibility-appeals-file-01-220e0e6b43/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/eligibility_appeals_file_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:digital", "length:medium", "domain:D6"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/eligibility_appeals_file_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:digital", "length:medium", "domain:D6"]
|
| 12 |
|
tasks/charts-inside-documents--eligibility-appeals-file-01-220e0e6b43/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--eligibility-appeals-file-01-220e0e6b43/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--gantt-schedule-board-01-824296e2a8/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/gantt_schedule_board_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:digital", "length:short", "domain:D5"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/gantt_schedule_board_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:digital", "length:short", "domain:D5"]
|
| 12 |
|
tasks/charts-inside-documents--gantt-schedule-board-01-824296e2a8/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--gantt-schedule-board-01-824296e2a8/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--integrity-filing-annex-01-5eab6bac71/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/integrity_filing_annex_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D2"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/integrity_filing_annex_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D2"]
|
| 12 |
|
tasks/charts-inside-documents--integrity-filing-annex-01-5eab6bac71/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--integrity-filing-annex-01-5eab6bac71/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--med-gas-shutdown-notice-01-a3c934ad1a/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/med_gas_shutdown_notice_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:image", "length:medium", "domain:D6"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/med_gas_shutdown_notice_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:image", "length:medium", "domain:D6"]
|
| 12 |
|
tasks/charts-inside-documents--med-gas-shutdown-notice-01-a3c934ad1a/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--med-gas-shutdown-notice-01-a3c934ad1a/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--parking-variance-hearing-01-57fcc48058/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/parking_variance_hearing_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D8"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/parking_variance_hearing_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:scan", "length:medium", "domain:D8"]
|
| 12 |
|
tasks/charts-inside-documents--parking-variance-hearing-01-57fcc48058/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--parking-variance-hearing-01-57fcc48058/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|
tasks/charts-inside-documents--pipeline-inspection-report-01-78ea67a3bf/task.toml
CHANGED
|
@@ -6,7 +6,7 @@ source_repo = "llamaindex/ExtractBenchPro"
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/pipeline_inspection_report_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
-
scorer_revision = "
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:image", "length:medium", "domain:D2"]
|
| 12 |
|
|
|
|
| 6 |
source_revision = "16f6672e06cf77491ec6d18c817d67864b90d845"
|
| 7 |
source_case_id = "charts_inside_documents/pipeline_inspection_report_01"
|
| 8 |
source_split = "charts_inside_documents"
|
| 9 |
+
scorer_revision = "2f27f100730afc7c395602e26a2a87e07ea66b31"
|
| 10 |
prompt_source = "https://arxiv.org/html/2607.29677v1#A3.SS1"
|
| 11 |
tags = ["source:synthetic", "challenge:charts_inside_documents", "perception:image", "length:medium", "domain:D2"]
|
| 12 |
|
tasks/charts-inside-documents--pipeline-inspection-report-01-78ea67a3bf/tests/Dockerfile
CHANGED
|
@@ -1,5 +1,5 @@
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
-
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
|
|
|
| 1 |
FROM python:3.12-slim-bookworm
|
| 2 |
RUN apt-get update && apt-get install -y --no-install-recommends git && rm -rf /var/lib/apt/lists/*
|
| 3 |
+
RUN pip install --no-cache-dir "llama-extract-bench @ git+https://github.com/run-llama/ExtractBench.git@2f27f100730afc7c395602e26a2a87e07ea66b31" "parse-bench==1.0.4"
|
| 4 |
WORKDIR /app
|
| 5 |
COPY . /tests/
|
tasks/charts-inside-documents--pipeline-inspection-report-01-78ea67a3bf/tests/verifier.py
CHANGED
|
@@ -4,18 +4,57 @@ from __future__ import annotations
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
|
|
|
| 7 |
from datetime import UTC, datetime
|
| 8 |
from pathlib import Path
|
| 9 |
from typing import Any
|
| 10 |
|
| 11 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
|
|
|
| 12 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 13 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 14 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 15 |
from extract_bench.schemas.product import ProductType
|
| 16 |
|
| 17 |
|
| 18 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 20 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 21 |
now = datetime.now(UTC)
|
|
@@ -38,12 +77,15 @@ def score_prediction(test_json: Path, prediction: Any) -> dict[str, float]:
|
|
| 38 |
completed_at=now,
|
| 39 |
latency_in_ms=0,
|
| 40 |
)
|
| 41 |
-
|
| 42 |
-
|
|
|
|
| 43 |
metric.metric_name: metric.value
|
| 44 |
for metric in bundle.metrics
|
| 45 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 46 |
}
|
|
|
|
|
|
|
| 47 |
|
| 48 |
|
| 49 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
@@ -54,7 +96,8 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 54 |
"""
|
| 55 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 56 |
reward_path = log_dir / "reward.txt"
|
| 57 |
-
|
|
|
|
| 58 |
try:
|
| 59 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 60 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
@@ -63,14 +106,17 @@ def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, A
|
|
| 63 |
if not isinstance(prediction, dict):
|
| 64 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 65 |
else:
|
| 66 |
-
metrics = score_prediction(test_json, prediction)
|
| 67 |
report = {
|
| 68 |
"status": "scored",
|
| 69 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 70 |
"metrics": metrics,
|
| 71 |
}
|
|
|
|
|
|
|
| 72 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 73 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
|
|
|
| 74 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 75 |
return report
|
| 76 |
|
|
|
|
| 4 |
|
| 5 |
import argparse
|
| 6 |
import json
|
| 7 |
+
from collections.abc import Mapping, Sequence
|
| 8 |
from datetime import UTC, datetime
|
| 9 |
from pathlib import Path
|
| 10 |
from typing import Any
|
| 11 |
|
| 12 |
from extract_bench.evaluation.evaluators.extract import ExtractEvaluator
|
| 13 |
+
from extract_bench.evaluation.metrics.extract.unified_evidence_metric import ValueCell
|
| 14 |
from extract_bench.evaluation.score_case import load_extract_test_case
|
| 15 |
from extract_bench.schemas.extract_output import ExtractOutput
|
| 16 |
from extract_bench.schemas.pipeline_io import InferenceRequest, InferenceResult
|
| 17 |
from extract_bench.schemas.product import ProductType
|
| 18 |
|
| 19 |
|
| 20 |
+
def _feedback(cells: Sequence[ValueCell], metadata: Mapping[str, Any]) -> dict[str, Any]:
|
| 21 |
+
expected = sum(cell.gt_path is not None for cell in cells)
|
| 22 |
+
predicted = sum(cell.pred_path is not None for cell in cells)
|
| 23 |
+
matched = sum(cell.value_correct for cell in cells)
|
| 24 |
+
if (expected, predicted, matched) != (
|
| 25 |
+
metadata["expected_cells"],
|
| 26 |
+
metadata["predicted_cells"],
|
| 27 |
+
metadata["v_correct"],
|
| 28 |
+
):
|
| 29 |
+
raise ValueError("Value feedback does not account for the scorer's cell counts")
|
| 30 |
+
denominator = expected + predicted
|
| 31 |
+
entries = []
|
| 32 |
+
for cell in cells:
|
| 33 |
+
if cell.gt_path is None:
|
| 34 |
+
outcome = "prediction_only"
|
| 35 |
+
elif cell.pred_path is None:
|
| 36 |
+
outcome = "reference_only"
|
| 37 |
+
else:
|
| 38 |
+
outcome = "matched" if cell.value_correct else "value_differs"
|
| 39 |
+
entries.append(
|
| 40 |
+
{
|
| 41 |
+
"reference_path": cell.gt_path,
|
| 42 |
+
"output_path": cell.pred_path,
|
| 43 |
+
"outcome": outcome,
|
| 44 |
+
"f1_credit": 2.0 / denominator if cell.value_correct else 0.0,
|
| 45 |
+
}
|
| 46 |
+
)
|
| 47 |
+
return {
|
| 48 |
+
"schema_version": 1,
|
| 49 |
+
"status": "scored",
|
| 50 |
+
"path_space": "normalized_scoring_inputs",
|
| 51 |
+
"counts": {"expected": expected, "predicted": predicted, "matched": matched},
|
| 52 |
+
"value_incomplete": metadata["value_incomplete"],
|
| 53 |
+
"cells": entries,
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def score_prediction(test_json: Path, prediction: Any) -> tuple[dict[str, float], dict[str, Any]]:
|
| 58 |
"""Use exactly the normal evaluator's normalization and metric selection."""
|
| 59 |
case = load_extract_test_case(test_json, source_file=Path("/app/document.pdf"))
|
| 60 |
now = datetime.now(UTC)
|
|
|
|
| 77 |
completed_at=now,
|
| 78 |
latency_in_ms=0,
|
| 79 |
)
|
| 80 |
+
cells: list[ValueCell] = []
|
| 81 |
+
bundle = ExtractEvaluator().compute_metrics(result, case, value_cells=cells)
|
| 82 |
+
metrics = {
|
| 83 |
metric.metric_name: metric.value
|
| 84 |
for metric in bundle.metrics
|
| 85 |
if metric.metric_name.startswith("extract_unified_value_")
|
| 86 |
}
|
| 87 |
+
value_f1 = next(metric for metric in bundle.metrics if metric.metric_name == "extract_unified_value_f1")
|
| 88 |
+
return metrics, _feedback(cells, value_f1.metadata)
|
| 89 |
|
| 90 |
|
| 91 |
def verify(test_json: Path, prediction_path: Path, log_dir: Path) -> dict[str, Any]:
|
|
|
|
| 96 |
"""
|
| 97 |
log_dir.mkdir(parents=True, exist_ok=True)
|
| 98 |
reward_path = log_dir / "reward.txt"
|
| 99 |
+
for name in ("reward.txt", "metrics.json", "feedback.json"):
|
| 100 |
+
(log_dir / name).unlink(missing_ok=True)
|
| 101 |
try:
|
| 102 |
prediction = json.loads(prediction_path.read_text(encoding="utf-8"))
|
| 103 |
except (FileNotFoundError, UnicodeDecodeError, json.JSONDecodeError) as error:
|
|
|
|
| 106 |
if not isinstance(prediction, dict):
|
| 107 |
report = {"status": "invalid_submission", "error": "Expected one JSON object", "value_f1": 0.0}
|
| 108 |
else:
|
| 109 |
+
metrics, feedback = score_prediction(test_json, prediction)
|
| 110 |
report = {
|
| 111 |
"status": "scored",
|
| 112 |
"value_f1": metrics["extract_unified_value_f1"],
|
| 113 |
"metrics": metrics,
|
| 114 |
}
|
| 115 |
+
if report["status"] == "invalid_submission":
|
| 116 |
+
feedback = {"schema_version": 1, "status": "invalid_submission", "error": report["error"], "cells": []}
|
| 117 |
report["perfect"] = int(report["value_f1"] == 1.0)
|
| 118 |
(log_dir / "metrics.json").write_text(json.dumps(report, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 119 |
+
(log_dir / "feedback.json").write_text(json.dumps(feedback, indent=2, allow_nan=False) + "\n", encoding="utf-8")
|
| 120 |
reward_path.write_text(f"{report['value_f1']}\n", encoding="utf-8")
|
| 121 |
return report
|
| 122 |
|